BAC Information

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BAC

Clone NameB6Ng01-049N22
Chromosome2 (Build37)
Map Location 164,633,219 - 164,761,932
singlet/doubletdoublet
Overlap geneZswim3, Zswim1, 1700020C07Rik, Neurl2, Ctsa, Pltp, F730014I05Rik, Zfp335, LOC629777
Upstream geneWisp2, Kcnk15, Rims4, Ywhab, LOC381404, Tomm34, Stk4, Kcns1, Wfdc5, Wfdc12, Wfdc15a, Wfdc15b, Svs2, Svs3b, Svs4, Svs3a, Svs6, Svs5, Slpi, Matn4, Rbpjl, Sdc4, 2610042O14Rik, 1700126L10Rik, Dbndd2, Pigt, LOC670507, Wfdc2, OTTMUSG00000016288, Wfdc6a, Spinlw1, Wfdc8, Wfdc6b, Wfdc16, OTTMUSG00000001088, Wfdc10, LOC629761, Wfdc13, Spint4, OTTMUSG00000016293, Wfdc3, Dnttip1, Ube2c, Tnnc2, Snx21, Acot8
Downstream geneMmp9, Slc12a5, Ncoa5, Cd40, Cdh22, Slc35c2, Elmo2, Gm1008, Zfp334, 4833422F24Rik, Slc13a3, 2810408M09Rik, Slc2a10, Eya2, Prkcbp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-049N22.bB6Ng01-049N22.g
ACCDH874003DH874004
length1,1401,021
definitionDH874003|Mus musculus domesticus DNA, BAC clone: B6Ng01-049N22, 5' end.DH874004|Mus musculus domesticus DNA, BAC clone: B6Ng01-049N22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(164,760,772 - 164,761,932)(164,633,219 - 164,634,251)
sequence
gaattcactctggagatcaggctggcctctgaatccacctgcctctacct
ctgcctcctgagtgctgtgattaaagacacatgccaccactgcccagctg
tgaacctgggttcctgacattgcagcgtaaaggctgggctcacttggtcg
caccgcttcctcttcccaatacttgagggcctctccacaggctctcagat
gttccctgtcccagggagaagcttccagtttccttaaagcccgggagggc
ctgggctggcacagggccacttctactctggtcttttgactaaggcagtc
acaagggataggaagtagacagcctgtttcttcatggatagagactcctg
gagctgtgattctcaactccctaatgctgtgacccttgggtatagttccc
catgttgtggtgactcctaaccacaacatcatttctgttgctacttaact
gtaattttgctactgctgtgaatcataatgtaaatatctgatattcaact
cctaggaaagggtcattcagccattaaaggggctgtgacctgcaggctca
gaaccacggtcctagagcttcagccgtctctgatcttccaggggaggaga
ggccgcttccagtggacacccctcaagtgtttctaggatgcagacatcct
accagactagtgtgtcctcggatgcttcctctcagagtgctccatcctgg
aatgcactgtattctcacgcggagtcctcccaggctgtctagaggcatgt
tacaacctgtcacactctctggtgaccagtctacaggagtctttgccagg
tctgaccttcagaccacgctgccaggagcctcttggagacctttccgtta
tagtcttgcttgcttgagctaacttgaatgaaacagatctgatgagtgca
gctgagggtctcaactgagaccagaccggttctcttcctcctgctcatgc
cagcgcagcatctggctttagtacccaggctcactcctctggcctctaga
gcatcctgaggtcgcccccccaccccgggtcttcatatgacctggttctc
atgcactttgtcctcttgatcttccaactctgtgacggtccacaggtctc
ttctttacctccctcaatattacaggccaaacaatctttt
gaattccagacctaccagggctgaatagagagaccctgtcccctctcccc
caagagagagatacaaaagaaataagtaacaaatactggagatgcataca
aggcttcccactgaaatagctcctttcccctgggcctatgaatgaataga
ggccagcagtaggagagcagtggttgagcactgagtggcaggcatttgat
gagacagacccatgggagtgaagacacagatctgtgaagaagatggcatc
ctgtagcaactgggctgccgtgcttggcagaaggcgagggcagttgcaat
ctgtcagaaagtccttcccacaactgaggcgcctggactccgtgctttgt
ggtggtaccttgctaagctaccccacaagcaggttgtctagcacccagca
tggcagttgttcgtggtaggcattgattgttgagtaaatgagttgtcaag
ggttaaacatgatttagggaaatgggtactgctctaaaaaaatatgaatt
taggcctttattttcatctttaaggtttttttggtttttgggttttttta
aagatttattttctttttaagatttatttatttatttactatatgtaagt
ccactgtagctgtcctcagatactccagaagagggcatcagatttcgtta
ctgatggttgtgagccaccatgtggttgctgggatttgaacttgggacct
tcggaagagcagtcggcactcttaaccactgagccatcccaccagcccca
agatttatttattttatgtttatgaatacactggtgctgtcttcagacac
accagaagagggcatcagaccccattacagatggtgtgagccaccatggt
ggttgctgggaattaaactagggacctctggagagcagtcagggctctac
tactgagtcatctctcatctcatcttaagtttaaaactcattttatttat
attctgtctatgaaggcagaaaagacattggatccgatggaggtgggagt
ccggggcagttgagaccacca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_164760772_164761932
seq2: B6Ng01-049N22.b_45_1184 (reverse)

seq1  AAAAGATTGTTTAGGCTGTTAATTATTGGAGGGAGGGGAAAAGGAGAGAG  50
      |||||||||||| | ||||  | |||| ||||||||  || |    ||||
seq2  AAAAGATTGTTTGGCCTGT--AATATT-GAGGGAGGTAAAGA----AGAG  43

seq1  ACCTGTGGGACCGTCACAGAAGGTTTGGGAAGATCCAGAGTGACAAAGTG  100
      |||||| |||||||||||||  |||  |||||||| |||| |||||||||
seq2  ACCTGT-GGACCGTCACAGA--GTT--GGAAGATCAAGAG-GACAAAGTG  87

seq1  CATGGAGGAACCAGGTCATATTGGAGACACCGGGGGTGGGGGGGCGACCT  150
      ||||   ||||||||||||||  || | ||| ||||||||||||||||||
seq2  CATG--AGAACCAGGTCATAT--GA-AGACCCGGGGTGGGGGGGCGACCT  132

seq1  CAGGATGCTCTAGAGGCCAGAGGAAGTGAGCCTGGGGTACCTAAAGCCAG  200
      ||||||||||||||||||||||| ||||||||| ||||| ||||||||||
seq2  CAGGATGCTCTAGAGGCCAGAGG-AGTGAGCCT-GGGTA-CTAAAGCCAG  179

seq1  ATGCTTGCGCTGGCATTGAGCAGGAGGAAGAGAACGGTCCTGGTCTCAGT  250
      |||| |||||||||| ||||||||||||||||||| |  |||||||||||
seq2  ATGC-TGCGCTGGCA-TGAGCAGGAGGAAGAGAACCGGTCTGGTCTCAGT  227

seq1  TGAGACCCTCAGCTGCACTCATCAGATCTGTTTCATTC-AGTTAGCTCAA  299
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TGAGACCCTCAGCTGCACTCATCAGATCTGTTTCATTCAAGTTAGCTCAA  277

seq1  GCAAGCAAGACTATAACGGAAAGGTCTCC-AGAGGCTCCTGGCAGCGTGG  348
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GCAAGCAAGACTATAACGGAAAGGTCTCCAAGAGGCTCCTGGCAGCGTGG  327

seq1  TCTGAAGGTCAGACCTGGCAAAGACTCCTGTAGACTGGTCACCAGAGAGT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAAGGTCAGACCTGGCAAAGACTCCTGTAGACTGGTCACCAGAGAGT  377

seq1  GTGACAGGTTGTAACATGCCTCTAGACAGCCTGGGAGGACTCCGCGTGAG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACAGGTTGTAACATGCCTCTAGACAGCCTGGGAGGACTCCGCGTGAG  427

seq1  AATACAGTGCATTCCAGGATGGAGCACTCTGAGAGGAAGCATCCGAGGAC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACAGTGCATTCCAGGATGGAGCACTCTGAGAGGAAGCATCCGAGGAC  477

seq1  ACACTAGTCTGGTAGGATGTCTGCATCCTAGAAACACTTGAGGGGTGTCC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTAGTCTGGTAGGATGTCTGCATCCTAGAAACACTTGAGGGGTGTCC  527

seq1  ACTGGAAGCGGCCTCTCCTCCCCTGGAAGATCAGAGACGGCTGAAGCTCT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGAAGCGGCCTCTCCTCCCCTGGAAGATCAGAGACGGCTGAAGCTCT  577

seq1  AGGACCGTGGTTCTGAGCCTGCAGGTCACAGCCCCTTTAATGGCTGAATG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACCGTGGTTCTGAGCCTGCAGGTCACAGCCCCTTTAATGGCTGAATG  627

seq1  ACCCTTTCCTAGGAGTTGAATATCAGATATTTACATTATGATTCACAGCA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTTTCCTAGGAGTTGAATATCAGATATTTACATTATGATTCACAGCA  677

seq1  GTAGCAAAATTACAGTTAAGTAGCAACAGAAATGATGTTGTGGTTAGGAG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCAAAATTACAGTTAAGTAGCAACAGAAATGATGTTGTGGTTAGGAG  727

seq1  TCACCACAACATGGGGAACTATACCCAAGGGTCACAGCATTAGGGAGTTG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCACAACATGGGGAACTATACCCAAGGGTCACAGCATTAGGGAGTTG  777

seq1  AGAATCACAGCTCCAGGAGTCTCTATCCATGAAGAAACAGGCTGTCTACT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATCACAGCTCCAGGAGTCTCTATCCATGAAGAAACAGGCTGTCTACT  827

seq1  TCCTATCCCTTGTGACTGCCTTAGTCAAAAGACCAGAGTAGAAGTGGCCC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTATCCCTTGTGACTGCCTTAGTCAAAAGACCAGAGTAGAAGTGGCCC  877

seq1  TGTGCCAGCCCAGGCCCTCCCGGGCTTTAAGGAAACTGGAAGCTTCTCCC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCCAGCCCAGGCCCTCCCGGGCTTTAAGGAAACTGGAAGCTTCTCCC  927

seq1  TGGGACAGGGAACATCTGAGAGCCTGTGGAGAGGCCCTCAAGTATTGGGA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGACAGGGAACATCTGAGAGCCTGTGGAGAGGCCCTCAAGTATTGGGA  977

seq1  AGAGGAAGCGGTGCGACCAAGTGAGCCCAGCCTTTACGCTGCAATGTCAG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGAAGCGGTGCGACCAAGTGAGCCCAGCCTTTACGCTGCAATGTCAG  1027

seq1  GAACCCAGGTTCACAGCTGGGCAGTGGTGGCATGTGTCTTTAATCACAGC  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCCAGGTTCACAGCTGGGCAGTGGTGGCATGTGTCTTTAATCACAGC  1077

seq1  ACTCAGGAGGCAGAGGTAGAGGCAGGTGGATTCAGAGGCCAGCCTGATCT  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGGAGGCAGAGGTAGAGGCAGGTGGATTCAGAGGCCAGCCTGATCT  1127

seq1  CCAGAGTGAATTC  1161
      |||||||||||||
seq2  CCAGAGTGAATTC  1140

seq1: chr2_164633219_164634251
seq2: B6Ng01-049N22.g_67_1087

seq1  GAATTCCAGACCTACCAGGGCTGAATAGAGAGACCCTGTCCCCTCTCCCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGACCTACCAGGGCTGAATAGAGAGACCCTGTCCCCTCTCCCC  50

seq1  CAAGAGAGAGATACAAAAGAAATAAGTAACAAATACTGGAGATGCATACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAGAGAGATACAAAAGAAATAAGTAACAAATACTGGAGATGCATACA  100

seq1  AGGCTTCCCACTGAAATAGCTCCTTTCCCCTGGGCCTATGAATGAATAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTTCCCACTGAAATAGCTCCTTTCCCCTGGGCCTATGAATGAATAGA  150

seq1  GGCCAGCAGTAGGAGAGCAGTGGTTGAGCACTGAGTGGCAGGCATTTGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAGCAGTAGGAGAGCAGTGGTTGAGCACTGAGTGGCAGGCATTTGAT  200

seq1  GAGACAGACCCATGGGAGTGAAGACACAGATCTGTGAAGAAGATGGCATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACAGACCCATGGGAGTGAAGACACAGATCTGTGAAGAAGATGGCATC  250

seq1  CTGTAGCAACTGGGCTGCCGTGCTTGGCAGAAGGCGAGGGCAGTTGCAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAGCAACTGGGCTGCCGTGCTTGGCAGAAGGCGAGGGCAGTTGCAAT  300

seq1  CTGTCAGAAAGTCCTTCCCACAACTGAGGCGCCTGGACTCCGTGCTTTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCAGAAAGTCCTTCCCACAACTGAGGCGCCTGGACTCCGTGCTTTGT  350

seq1  GGTGGTACCTTGCTAAGCTACCCCACAAGCAGGTTGTCTAGCACCCAGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGTACCTTGCTAAGCTACCCCACAAGCAGGTTGTCTAGCACCCAGCA  400

seq1  TGGCAGTTGTTCGTGGTAGGCATTGATTGTTGAGTAAATGAGTTGTCAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAGTTGTTCGTGGTAGGCATTGATTGTTGAGTAAATGAGTTGTCAAG  450

seq1  GGTTAAACATGATTTAGGGAAATGGGTACTGCTCTAAAAAAATATGAATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTAAACATGATTTAGGGAAATGGGTACTGCTCTAAAAAAATATGAATT  500

seq1  TAGGCCTTTATTTTCATCTTTAAGGTTTTTTTGGTTTTTGGGTTTTTTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCCTTTATTTTCATCTTTAAGGTTTTTTTGGTTTTTGGGTTTTTTTA  550

seq1  AAGATTTATTTTCTTTTTAAGATTTATTTATTTATTTACTATATGTAAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTTATTTTCTTTTTAAGATTTATTTATTTATTTACTATATGTAAGT  600

seq1  CCACTGTAGCTGTCCTCAGATACTCCAGAAGAGGGCATCAGATTTCGTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTGTAGCTGTCCTCAGATACTCCAGAAGAGGGCATCAGATTTCGTTA  650

seq1  CTGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTTGGGACCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTTGGGACCT  700

seq1  TCGGAAGAGCAGTCGGCACTCTTAACCACTGAGCCATCCCACCAGCCCCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGAAGAGCAGTCGGCACTCTTAACCACTGAGCCATCCCACCAGCCCCA  750

seq1  AGATTTATTTATTTTATGTTTATGAATACACTGTTGCTGTCTTCAGACAC  800
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  AGATTTATTTATTTTATGTTTATGAATACACTGGTGCTGTCTTCAGACAC  800

seq1  ACCAGAAGAGGGCATCAGACCCCATTACAGATGGTTGTGAGCCACCAT-G  849
      |||||||||||||||||||||||||||||||||| ||||||||||||| |
seq2  ACCAGAAGAGGGCATCAGACCCCATTACAGATGG-TGTGAGCCACCATGG  849

seq1  TGGTTGCTGGGAATTAAACTAGGGACCTCTGGAAGAGCAGTCAGTGCTCC  899
      |||||||||||||||||||||||||||||||| ||||||||||| |||| 
seq2  TGGTTGCTGGGAATTAAACTAGGGACCTCTGG-AGAGCAGTCAGGGCTC-  897

seq1  TAACTACTGAGTCATCTCTCCATCCTCATCTTTAAGTTTTAAAGACTCAT  949
        ||||||||||||||||| ||| |||||| ||||||||  || ||||| 
seq2  -TACTACTGAGTCATCTCT-CAT-CTCATC-TTAAGTTT--AAAACTCA-  940

seq1  TTTTATTTATATTTCTGTCTATGAAGGCCAGAAGAGGACATTGGATCCGA  999
      ||||||||||| ||||||||||||||| ||||| | ||||||||||||||
seq2  TTTTATTTATA-TTCTGTCTATGAAGG-CAGAA-AAGACATTGGATCCGA  987

seq1  TGGAGGT-GGAGTCACGGGCAGTTGAGGACCACCA  1033
      ||||||| ||||||  |||||||||| ||||||||
seq2  TGGAGGTGGGAGTCCGGGGCAGTTGA-GACCACCA  1021