BAC Information

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BAC

Clone NameB6Ng01-049N24
Chromosome7 (Build37)2 (Build37)
Map Location 9,817,362 - 9,818,111134,441,534 - 134,442,032
singlet/doubletsingletsinglet
Overlap geneLOC665571
Upstream geneLOC100042009, LOC100042754, V2r14, EG628128, EG434109, LOC434110, EG628145, EG545909, LOC100042039, LOC100042781, LOC665539, LOC100042795, LOC100042060, EG665552, LOC100042790, LOC100042803, LOC665598, LOC100042810, LOC665593, EG665582, EG434113, EG665577
Downstream geneLOC100042083, Gm1961, V2r4, LOC100042848, LOC100042096, LOC100042870, LOC100042105, LOC100042859, LOC100042113, LOC100042120, LOC100042126, LOC100042139, LOC100042894, Vmn2r47, 2810047C21Rik, LOC665625, LOC545911, EG625580, LOC100042163, LOC625605, EG434117, EG628152, LOC100042921, Vmn2r52, LOC665663
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-049N24.bB6Ng01-049N24.g
ACCDH874005DH874006
length959871
definitionDH874005|Mus musculus domesticus DNA, BAC clone: B6Ng01-049N24, 5' end.DH874006|Mus musculus domesticus DNA, BAC clone: B6Ng01-049N24, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(9,817,362 - 9,818,111)(134,441,534 - 134,442,032)
sequence
gaattcactctgtagatcatgctggccataaactatgaaatctgcctgcc
tcttcttcccaaatgcctcggttaaaggcatgaaccatcactgcccagct
gcctttagcttaatacaagtatgacaagtaaagccttactaattaaaact
gcttttatattacagttgtttattatattattagggttgaagattgaaat
atactcccattttatagtgattttgtatttctggattttttcaattttat
aaattggagatttcacttatttagatttcaaattttgtcccctttcacta
tttcccttctgcaaatccactatgccatccccccttaccctgcttctatg
agggtgctcccctacccacatacccactcttgcttcagcacccaagcatt
catctacactggggaatcaagccttcacaggaccaagggactcccctccc
attgatgacagatagggagctttaactacttcagtccgtcccctaaaacc
ttcattgcagtccctgtgttcattccaatggttgactgtgaacatccaca
tctgtattggtcaggatctggcaaagcctcctaggagacagctgtatcag
tctcctgtccacaagcacttcttgccatccacaatagtgtctgggtttgg
tatctgcatttgtgatggatcttcaggtggggcaggctgtgtgtggcctt
taattcagtctctgatcttctctttgtcccattatttccaatagatagga
acaattctgagttaaaattttgtagatgtgtgggtggtcctatccctcaa
ctgggagccatgcctaacctctggctattgtctcgacagattctccttcc
cgattctgggatatttcagctaatatcatcgctgtacatcctgggatgct
cttgatttcctggcatctgggactttctggttgctacaaaacagttcccc
atccctagt
gaattcctgatctttccaagacttttatcatgaatgggtgttggatcttg
tcgaatgccttttccacatctaacgagatgatcatgtggtttttgtcttt
gagtttgtttatataatgtattattttgatggatttctatatattaatcc
atccctgcatccatggaataaaacctacttggtcaggattgatgattgct
ttaatgtgttcttggattcggttagcgaggattttattgaggagttttgc
atctatattcataagggaaattggtctgaagttctctattttttgttgta
tctttttgtggtttaggtatcagagtaattgtggcttcataaaatgagtt
gggtagagtaccttctacttctacttactcaaagaatcaacttcgagttt
ggttaattctttgaatagttcttgtttccacttggttgatttcacccctg
agtttgattatttcctgccatctactcctcttgggtgaatttgcttcgtt
tttctagagcatttagatgtgttttcaagctgctagtgtgtgctctctcc
agtttctttttggaggcactcagagctatgagtttacctcttagaaatgc
tttcattttgtcccataagtttgggtatgttgtggctaaattttcattaa
actctaaaaagtctttaatttttctctttattccttccttgatcaaggta
tcattgagaagagtgttgttcaatttccaagtgaatgtgggctttccatt
atttatggtgttaatgaagatcagcctttttccatggtggtctcataggt
tgcacgggcaaatttcaatattcttgtttctgttgaggcctgttttgtgt
ccaactatatggtcaattttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_9817362_9818111
seq2: B6Ng01-049N24.b_47_796

seq1  GAATTCACTCTGTAGATCATGCTGGCCATAAACTATGAAATCTGCCTGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCTGTAGATCATGCTGGCCATAAACTATGAAATCTGCCTGCC  50

seq1  TCTTCTTCCCAAATGCCTCGGTTAAAGGCATGAACCATCACTGCCCAGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTTCCCAAATGCCTCGGTTAAAGGCATGAACCATCACTGCCCAGCT  100

seq1  GCCTTTAGCTTAATACAAGTATGACAAGTAAAGCCTTACTAATTAAAACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTAGCTTAATACAAGTATGACAAGTAAAGCCTTACTAATTAAAACT  150

seq1  GCTTTTATATTACAGTTGTTTATTATATTATTAGGGTTGAAGATTGAAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTATATTACAGTTGTTTATTATATTATTAGGGTTGAAGATTGAAAT  200

seq1  ATACTCCCATTTTATAGTGATTTTGTATTTCTGGATTTTTTCAATTTTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTCCCATTTTATAGTGATTTTGTATTTCTGGATTTTTTCAATTTTAT  250

seq1  AAATTGGAGATTTCACTTATTTAGATTTCAAATTTTGTCCCCTTTCACTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGGAGATTTCACTTATTTAGATTTCAAATTTTGTCCCCTTTCACTA  300

seq1  TTTCCCTTCTGCAAATCCACTATGCCATCCCCCCTTACCCTGCTTCTATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCTTCTGCAAATCCACTATGCCATCCCCCCTTACCCTGCTTCTATG  350

seq1  AGGGTGCTCCCCTACCCACATACCCACTCTTGCTTCAGCACCCAAGCATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTGCTCCCCTACCCACATACCCACTCTTGCTTCAGCACCCAAGCATT  400

seq1  CATCTACACTGGGGAATCAAGCCTTCACAGGACCAAGGGACTCCCCTCCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTACACTGGGGAATCAAGCCTTCACAGGACCAAGGGACTCCCCTCCC  450

seq1  ATTGATGACAGATAGGGAGCTTTAACTACTTCAGTCCGTCCCCTAAAACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGATGACAGATAGGGAGCTTTAACTACTTCAGTCCGTCCCCTAAAACC  500

seq1  TTCATTGCAGTCCCTGTGTTCATTCCAATGGTTGACTGTGAACATCCACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTGCAGTCCCTGTGTTCATTCCAATGGTTGACTGTGAACATCCACA  550

seq1  TCTGTATTGGTCAGGATCTGGCAAAGCCTCCTAGGAGACAGCTGTATCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTATTGGTCAGGATCTGGCAAAGCCTCCTAGGAGACAGCTGTATCAG  600

seq1  TCTCCTGTCCACAAGCACTTCTTGCCATCCACAATAGTGTCTGGGTTTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTGTCCACAAGCACTTCTTGCCATCCACAATAGTGTCTGGGTTTGG  650

seq1  TATCTGCATTTGTGATGGATCTTCAGGTGGGGCAGGCTGTGTGTGGCCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTGCATTTGTGATGGATCTTCAGGTGGGGCAGGCTGTGTGTGGCCTT  700

seq1  TAATTCAGTCTCTGATCTTCTCTTTGTCCCATTATTTCCAATAGATAGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTCAGTCTCTGATCTTCTCTTTGTCCCATTATTTCCAATAGATAGGA  750

seq1: chr2_134441534_134442032
seq2: B6Ng01-049N24.g_443_936 (reverse)

seq1  CAAAATTGACCATATAGTTGGTCACAAAACAGGCCTCAATAGATACAAAA  50
      ||||||||||||||||||||| ||||||||||||||||| ||| |||| |
seq2  CAAAATTGACCATATAGTTGGACACAAAACAGGCCTCAACAGAAACAAGA  50

seq1  ATATTGAAATTGTCCCATGTATCCTATCAGACCACCATGGCCTAAGACTG  100
      |||||||||||  ||| || | ||||| ||||||||||||   ||| |||
seq2  ATATTGAAATTTGCCCGTGCAACCTATGAGACCACCATGGAAAAAGGCTG  100

seq1  ATCTTCAATAACAACATAAATAATGGAAAGCCAACATTCACGTGGAAACT  150
      ||||||| ||||| |||||||||||||||||| |||||||| |||||| |
seq2  ATCTTCATTAACACCATAAATAATGGAAAGCCCACATTCACTTGGAAATT  150

seq1  GAATAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAG  200
      ||| |||||||||||||||||||||||| |||||||||||||||||| | 
seq2  GAACAACACTCTTCTCAATGATACCTTGATCAAGGAAGGAATAAAGAGAA  200

seq1  AAATTAATGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCA  250
      ||||||| ||||||||||||||||||||||||  ||||||||| ||||||
seq2  AAATTAAAGACTTTTTAGAGTTTAATGAAAATTTAGCCACAACATACCCA  250

seq1  AACCTATGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTCT  300
      ||| ||||||||| ||||||||||||||||||||| ||||||||||||||
seq2  AACTTATGGGACAAAATGAAAGCATTTCTAAGAGGTAAACTCATAGCTCT  300

seq1  GAGTGCCTCCAAGAAGAAACGGGAGACAGCACATACTAGCAGCTTGACAA  350
      |||||||||||| ||||||| ||||| |||||| ||||||||||||| ||
seq2  GAGTGCCTCCAAAAAGAAACTGGAGAGAGCACACACTAGCAGCTTGAAAA  350

seq1  CACATCTAAAAGCCCTAGAAAAAAAGGAAGCAAATTCACCCAAGAGGAGT  400
      |||||||||| || ||||  ||||| ||||||||||||||||||||||||
seq2  CACATCTAAATGCTCTAG--AAAAACGAAGCAAATTCACCCAAGAGGAGT  398

seq1  AGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAAC  450
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAAC  448

seq1  AAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAG  499
         |||||||||||||||||||||||||||  | ||||| |||||||||
seq2  ---AAGAACTATTCAAAGAATTAACCAAACTCGAAGTTGATTCTTTGAG  494