BAC Information

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BAC

Clone NameB6Ng01-050A17
Chromosome2 (Build37)9 (Build37)
Map Location 142,776,691 - 142,777,69816,712,559 - 16,713,647
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC668913, LOC668914, Kif16b
Downstream geneSnrpb2, Otor, LOC668915, LOC668916, Pcsk2, Bfsp1, LOC100043799, LOC100043534, Dstn, Rrbp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-050A17.bB6Ng01-050A17.g
ACCDH874111DH874112
length9551,069
definitionDH874111|Mus musculus domesticus DNA, BAC clone: B6Ng01-050A17, 5' end.DH874112|Mus musculus domesticus DNA, BAC clone: B6Ng01-050A17, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(142,776,691 - 142,777,698)(16,712,559 - 16,713,647)
sequence
gaattctttgttcagttctgagccccattttttaatggggttatttgatt
ttctgaagtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggtct
ttttgtcttattgacggtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcgattctcgatcttacagcacaagccattgctgtt
ctgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccac
tttctcctctataagtttcagtgtctctggttttatgtgaagttccttga
tccacttagatttgaccttagtacaaggagataagtatggatcgattcgc
attcttctacacgataacaaccagttgtgccagcaccaattgttgaaaat
gctgtctttcttccactggatggttttagctcccttgtcgaagatcaagt
gaccataggtgtgtgggttcatttctggatcttcaattctattccattgg
tctacttgtctgtctctataccagtaccatgcagtttttatcacaattgc
tctgtagtaaagctttaggtctggcatggtgattccgccagaagttcttt
tatccttgagaagactttttgctatcctaggctttttgttattccagaca
aatttgcaaattgctccttccaattcgttgaagaattgagttggaatttt
gatggggattgcattgaatctgtagattgcttttggcaagatagccattt
ttacaatgttgatcctgccaatccatgagcatgggagatctttccatctt
ctgagatcttctttaatttctttcttcagagatttgaagtttttatcata
cagatctttcacttcttagtagagtcacgcaagatattttatattatttg
tgact
gaattcagaactgccaagtgcacagtgctgaggcccactccctaccctgt
gaccttacagagttggctgaaaagaaggacccctggccccctttccatct
cttcctttcttccccatcgagagagcacagagaagagtttctgagctgaa
ggaagtccttcatgaacttactgtacattgcaacccttactacttattct
ttactgtagaaattggatgatattttatgctaactatatatttattatgg
caatgaaaatttatgtaaacaggagatttgtttttatttctctaactttc
tggaatactactgtgtgcataatatttgctcattaggtagtcgtgaaggg
aggaaaagaaagagatgggaggaagcaaccgaaaaaaataagaaaaatat
agtgagacactttctgtaactagagactgtcaggaagatactactattct
cttggagctatgtacagtagaaattatggatgaggcttctgctatttatt
aaacagaatgatttttagataaacatttcattttgatgaaacttgcatag
atacttgcaaaggaaaaggttaagtgtataccagaaaaatggatgaaatt
ggaataaatagtaaaatattccatgtagcttttgtttttattattgtttg
taaaaataagaaataagaatctctaattctttgtatcttcctaaggtttg
ctgctattcagatctgtttgcaatctttgcagtgtccacagtttacctga
ggttttaagaagtagttccagggtcctaaataaaatgttactatatcaaa
gaacatggtttccaggttctgatggacagatacttttgtctatcttgctg
aacatgtttgtcccaagcagacaaacaatgagtgtatcctgggccagttt
acagtcagctgctaacatactctgtgtaactgtcactccagtaagtttca
gtcctcatgacagtagaggctgagttgtttctttcactgattcttgatct
ataacttgacttatgaaaacacctgtctcatggtcaataatgaactgatg
aatttctaaatgctgagaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_142776691_142777698
seq2: B6Ng01-050A17.b_42_589 (reverse)

seq1  AATGGAATAGAATTGAAGACCCAGAAATGAACCCACACACCTATGGTCAC  50
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  AATGGAATAGAATTGAAGATCCAGAAATGAACCCACACACCTATGGTCAC  50

seq1  TTGATCTTCGACAAGGGAGCTAAAACCATCCAGAGGAAGAAAGACAGCAT  100
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TTGATCTTCGACAAGGGAGCTAAAACCATCCAGTGGAAGAAAGACAGCAT  100

seq1  TTTCAACAATTGGTGCTGGCACAACTGGTTGTTATCATGTAGAAGAATGG  150
      |||||||||||||||||||||||||||||||||||| |||||||||||| 
seq2  TTTCAACAATTGGTGCTGGCACAACTGGTTGTTATCGTGTAGAAGAATGC  150

seq1  GAATCGATCCATACTTATCTCCTTGTACTAAGGTCAAATCTAAGTGGATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCGATCCATACTTATCTCCTTGTACTAAGGTCAAATCTAAGTGGATC  200

seq1  AAGGAACTTCACATAAAACCAGAGACACTGAAACTTATAGAGGAGAAAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAACTTCACATAAAACCAGAGACACTGAAACTTATAGAGGAGAAAGT  250

seq1  GGGGAAAAGCCTTGAAGATATGGGCACAGGGGACAAATTCCTGAACAGAA  300
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GGGGAAAAGCCTTGAAGATATGGGCACAGGGGAAAAATTCCTGAACAGAA  300

seq1  CAGCAATGGCTTGTGCTGTAAGATCGAGAATTGACAAATGGGACCTAATG  350
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CAGCAATGGCTTGTGCTGTAAGATCGAGAATCGACAAATGGGACCTAATG  350

seq1  AAACTCCAAAGTTTCTGCAAGGCAAAAGACACCGTCAATAAGACAAAAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCCAAAGTTTCTGCAAGGCAAAAGACACCGTCAATAAGACAAAAAG  400

seq1  ACCACCAACAGATTGGGAAAGGATCTTTACCTATCCTAAATCAGATAGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACCAACAGATTGGGAAAGGATCTTTACCTATCCTAAATCAGATAGGG  450

seq1  GACTAATATCCAACATATATAAAGAACTCAAGAAGGTGGACTTCAGAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTAATATCCAACATATATAAAGAACTCAAGAAGGTGGACTTCAGAAAA  500

seq1  TCAAATAACCCCATTAAAAAATGGGGCTCACAAAACCATCCAGTGGAAGA  550
      |||||||||||||||||||||||||||||| ||            ||| |
seq2  TCAAATAACCCCATTAAAAAATGGGGCTCAGAA----------CTGAACA  540

seq1  AAGACAGCATTTTCAACAATTGGTGCTGGCACAACTGGTTGTTATCATGT  600
      ||||    |||                                       
seq2  AAGA----ATTC--------------------------------------  548

seq1  AGAAGAATGCGAATCGATCCATACTTATCTCCTTGTACTAAGGTCAAATC  650
                                                        
seq2  --------------------------------------------------  548

seq1  TAAGTGGATCAAGGAACTTCACATAAAACCAGAGACACTGAAACTTATAG  700
                                                        
seq2  --------------------------------------------------  548

seq1  AGGAGAAAGTGGGGAAAAGCCTTGAAGATATGGGCACAGGGGAAAAATTC  750
                                                        
seq2  --------------------------------------------------  548

seq1  CTGAACAGAAGAGCAATGGCTTGTGCTGTAAGATCGAGAATTGACAAATG  800
                                                        
seq2  --------------------------------------------------  548

seq1  GGACCTAATGAAACTCCAAAGTTTCTGCAAGGCAAAAGACACTGTCTATA  850
                                                        
seq2  --------------------------------------------------  548

seq1  AGACAAAAAGACCACCAACAGACTGGGAAAGGATCTTTACCTATCCTAAA  900
                                                        
seq2  --------------------------------------------------  548

seq1  TCAGATAGGGGACTAATATCCAACATATATAAAGAACTCAAGAAGGTGGA  950
                                                        
seq2  --------------------------------------------------  548

seq1  CCTCAGAAAATCAAATAACCCCATTAAAAAATGGGGCTCAGAACTGAACA  1000
                                                        
seq2  --------------------------------------------------  548

seq1  AAGAATTC  1008
              
seq2  --------  548

seq1: chr9_16712559_16713647
seq2: B6Ng01-050A17.g_66_1134

seq1  GAATTCAGAACTGCCAAGTGCACAGTGCTGAGGCCCACTCCCTACCCTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAACTGCCAAGTGCACAGTGCTGAGGCCCACTCCCTACCCTGT  50

seq1  GACCTTACAGAGTTGGCTGAAAAGAAGGACCCCTGGCCCCCTTTCCATCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTTACAGAGTTGGCTGAAAAGAAGGACCCCTGGCCCCCTTTCCATCT  100

seq1  CTTCCTTTCTTCCCCATCGAGAGAGCACAGAGAAGAGTTTCTGAGCTGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTTTCTTCCCCATCGAGAGAGCACAGAGAAGAGTTTCTGAGCTGAA  150

seq1  GGAAGTCCTTCATGAACTTACTGTACATTGCAACCCTTACTACTTATTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGTCCTTCATGAACTTACTGTACATTGCAACCCTTACTACTTATTCT  200

seq1  TTACTGTAGAAATTGGATGATATTTTATGCTAACTATATATTTATTATGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTGTAGAAATTGGATGATATTTTATGCTAACTATATATTTATTATGG  250

seq1  CAATGAAAATTTATGTAAACAGGAGATTTGTTTTTATTTCTCTAACTTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGAAAATTTATGTAAACAGGAGATTTGTTTTTATTTCTCTAACTTTC  300

seq1  TGGAATACTACTGTGTGCATAATATTTGCTCATTAGGTAGTCGTGAAGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATACTACTGTGTGCATAATATTTGCTCATTAGGTAGTCGTGAAGGG  350

seq1  AGGAAAAGAAAGAGATGGGAGGAAGCAACCGAAAAAAATAAGAAAAATAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAAGAAAGAGATGGGAGGAAGCAACCGAAAAAAATAAGAAAAATAT  400

seq1  AGTGAGACACTTTCTGTAACTAGAGACTGTCAGGAAGATACTACTATTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAGACACTTTCTGTAACTAGAGACTGTCAGGAAGATACTACTATTCT  450

seq1  CTTGGAGCTATGTACAGTAGAAATTATGGATGAGGCTTCTGCTATTTATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGAGCTATGTACAGTAGAAATTATGGATGAGGCTTCTGCTATTTATT  500

seq1  AAACAGAATGATTTTTAGATAAACATTTCATTTTGATGAAACTTGCATAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGAATGATTTTTAGATAAACATTTCATTTTGATGAAACTTGCATAG  550

seq1  ATACTTGCAAAGGAAAAGGTTAAGTGTATACCAGAAAAATGGATGAAATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTTGCAAAGGAAAAGGTTAAGTGTATACCAGAAAAATGGATGAAATT  600

seq1  GGAATAAATAGTAAAATATTCCATGTAGCTTTTGTTTTTATTATTGTTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATAAATAGTAAAATATTCCATGTAGCTTTTGTTTTTATTATTGTTTG  650

seq1  TAAAAATAAGAAATAAGAATCTCTAATTCTTTGTATCTTCCTAAGGTTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAATAAGAAATAAGAATCTCTAATTCTTTGTATCTTCCTAAGGTTTG  700

seq1  CTGCTATTCAGATCTGTTTGCAATCTTTGCAGTGTCCACAGTTTACCTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTATTCAGATCTGTTTGCAATCTTTGCAGTGTCCACAGTTTACCTGA  750

seq1  GGTTTTAAGAAGTAGTTCCAGGGTCCTAAATAAAAATGTTACTATATCAA  800
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  GGTTTTAAGAAGTAGTTCCAGGGTCCTAAAT-AAAATGTTACTATATCAA  799

seq1  AGAACATGGTTTCCAGGTTCTGATGGACAGATACCTTTTGTCTATCTTGC  850
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  AGAACATGGTTTCCAGGTTCTGATGGACAGATA-CTTTTGTCTATCTTGC  848

seq1  TGAACATGTTTGTCCCCAAGCAGACAAACAATGAGTGTATCCTGGGCCAG  900
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TGAACATGTTTGT-CCCAAGCAGACAAACAATGAGTGTATCCTGGGCCAG  897

seq1  TTTTACAGTCAGGCTGCTAAACATACTCTGTGTTAACTTGTCACTCCAGT  950
       |||||||||| |||||| ||||||||||||| |||| ||||||||||||
seq2  -TTTACAGTCA-GCTGCT-AACATACTCTGTG-TAAC-TGTCACTCCAGT  942

seq1  AAGGTCTCAGTTCCTCCAATGACAGTAGAGGCTGAGTTGTTTCTTTCACT  1000
      || || |||| |||||  ||||||||||||||||||||||||||||||||
seq2  AA-GTTTCAG-TCCTC--ATGACAGTAGAGGCTGAGTTGTTTCTTTCACT  988

seq1  GATTTCTTGATCTATAACTTGACTTAATGAGAACACCTGTCTTCATGGGT  1050
      || |||||||||||||||||||||| |||| |||||||||| |||| |||
seq2  GA-TTCTTGATCTATAACTTGACTT-ATGAAAACACCTGTC-TCAT-GGT  1034

seq1  CAATAAATGAACCTGATGGATTTTCATAAATGCTGAGAA  1089
      |||| |||||| |||||| ||||   |||||||||||||
seq2  CAAT-AATGAA-CTGATGAATTT--CTAAATGCTGAGAA  1069