BAC Information

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BAC

Clone NameB6Ng01-050A18
Chromosome2 (Build37)
Map Location 55,062,538 - 55,193,725
singlet/doubletdoublet
Overlap geneLOC666936
Upstream geneLOC666913, LOC626563, LOC100041792, LOC100042878, Galnt13
Downstream geneKcnj3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-050A18.bB6Ng01-050A18.g
ACCDH874113DH874114
length1,120413
definitionDH874113|Mus musculus domesticus DNA, BAC clone: B6Ng01-050A18, 5' end.DH874114|Mus musculus domesticus DNA, BAC clone: B6Ng01-050A18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(55,192,577 - 55,193,725)(55,062,538 - 55,062,956)
sequence
gaattcctaagttaagaaaaggatctaaatgctacaatgaaagaacattt
tagaactgttagaatactcaggacctgcaccattgtagctaacttgtttc
ttagggacatatttttcttaatgtttatgttttaagtgtgatatgctgaa
aatttcaggattaaactttcaaaagacttctatttactagctggcttttt
aaagactagtagcaagggaagcaaaaggctttgtaaacatatagaagtgc
ttttgttttatttgtctattgactttctgactaatgtgctcaaactgttt
atacccagttaaatataagtaatttattcccagagaaacataaatatcta
gaaagttgtctttctgatattggaatttatctagtttaaaagcatatctt
ttctttaccacctctttgcaactgtcctggaataaagctacacatctatt
attcattcctgacctctgggttgtccacaattcgattgagttgtacccac
ccacctcctctcaactgaaggaactgtgagatgaattgattgcaaaagga
atgagtatagacagaaaggaagacagtgaactcagaaattacagtactga
gaggtcttgaaaatatgaacaaaataggaagccagatattaaaggttaag
aacgagctacacaggcaataaacacgaaagagaggagatactggtttgag
attgaaacatggatattaaagaaacaagatatagctaagacataagaatg
agagtcagagtggagggtacagtaaccaacagaattgaaatcaggatctg
agcaactgggcctactggaggaatcatataaatgaattttaaagaacacg
aactaatggtaatgagctttatagttatagggaaaggacgaccctataga
ctactacataaactcaatatatacatacagtttcagtagttacacttaaa
aaaaacaacactatgatatatgatgataacgttatctacagtgtcaagta
tatcaaaagtcagacagaaattctttttacaaatttacttttctatttca
ttgtagttaaggggaatcaataaccaagatgggtatctgatcacttcaat
acaaatgagtaggtacctga
actattgcagacttcctatctttcaattcgaagtcaactcctgccaagcc
acctgctgtgatttctgcccaattcagattcaggctccccacccactctg
tcttgcttaataaaggatctctttgtgttggaaattggtggttgggtgag
gtctgtgcctaatctgggtcccttcagtattcaataatagaaagaaatgg
gagttgcagaaaaacctgtgttttataagataaaaataagaaaacagtac
aacagcaaaaggcagtggctgaagcagttatgttacatacaaggaataag
caaatgaaatttctttggggtagctgtaatagcctggctctttttccaca
ggatacactgaaactccaggggttgttttgtttgtttgtttgttttgtgg
tgtggtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_55192577_55193725
seq2: B6Ng01-050A18.b_46_1165 (reverse)

seq1  TCAGGTACCCTAACATCCAATTTTTGTTATTGAAAGTGATCAAGATTACC  50
      |||||||||    ||       |||| ||||| |||||||| ||| ||||
seq2  TCAGGTACCTACTCA-------TTTG-TATTG-AAGTGATC-AGA-TACC  39

seq1  CATCTTTGTTTATTTTGATTCCCCTTAACTACCATGAATATGAAAAGTAG  100
      |||||| ||   | |||||||||||||||||| |||||   |||||||| 
seq2  CATCTTGGT---TATTGATTCCCCTTAACTACAATGAAATAGAAAAGTAA  86

seq1  ATTTTTGTTAGAAAGAATTTCTTGTCTGACTTTTGATATTACTATGACAC  150
      ||||    || |||||||||| |||||||||||||||| |||| ||||||
seq2  ATTT---GTAAAAAGAATTTC-TGTCTGACTTTTGATA-TACT-TGACAC  130

seq1  TGTAGATAACCTTTTATTCATTCATATATCATAGTGTTGTTTTTTTTTAA  200
      |||||||||| ||    ||| |||||||||||||||||| ||||||||||
seq2  TGTAGATAACGTT---ATCA-TCATATATCATAGTGTTG-TTTTTTTTAA  175

seq1  GTGTAACTACTGAAACTGTATGTAATATATTTGAGTTTATTGTAGTAGTC  250
      ||||||||||||||||||||||| ||||| ||||||||| ||||||||||
seq2  GTGTAACTACTGAAACTGTATGT-ATATA-TTGAGTTTA-TGTAGTAGTC  222

seq1  TATAGGGTCCTTCCTTTCCCTATAACTATAAAGCTCATTACCATTAGTTC  300
      |||||||| | |||||||||||||||||||||||||||||||||||||||
seq2  TATAGGGT-CGTCCTTTCCCTATAACTATAAAGCTCATTACCATTAGTTC  271

seq1  GTGTTCTTTAAAATTCATTTATATGATTCCTCCAGTAGG-CCAGTTGCTC  349
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  GTGTTCTTTAAAATTCATTTATATGATTCCTCCAGTAGGCCCAGTTGCTC  321

seq1  AGATCCCTGATTTCAATTCTGTTGGTTACTGTACCCTCCACTCTGACTCT  399
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAT-CCTGATTTCAATTCTGTTGGTTACTGTACCCTCCACTCTGACTCT  370

seq1  CATTCTTATGTCTTAGCTATATCTTGTTTCTTTAATATCCATGTTTCAAT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTTATGTCTTAGCTATATCTTGTTTCTTTAATATCCATGTTTCAAT  420

seq1  CTCAAACCAGTATCTCCTCTCTTTCGTGTTTATTGCCTGTGTAGCTCGTT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAACCAGTATCTCCTCTCTTTCGTGTTTATTGCCTGTGTAGCTCGTT  470

seq1  CTTAACCTTTAATATCTGGCTTCCTATTTTGTTCATATTTTCAAGACCTC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAACCTTTAATATCTGGCTTCCTATTTTGTTCATATTTTCAAGACCTC  520

seq1  TCAGTACTGTAATTTCTGAGTTCACTGTCTTCCTTTCTGTCTATACTCAT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTACTGTAATTTCTGAGTTCACTGTCTTCCTTTCTGTCTATACTCAT  570

seq1  TCCTTTTGCAATCAATTCATCTCACAGTTCCTTCAGTTGAGAGGAGGTGG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTTGCAATCAATTCATCTCACAGTTCCTTCAGTTGAGAGGAGGTGG  620

seq1  GTGGGTACAACTCAATCGAATTGTGGACAACCCAGAGGTCAGGAATGAAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGTACAACTCAATCGAATTGTGGACAACCCAGAGGTCAGGAATGAAT  670

seq1  AATAGATGTGTAGCTTTATTCCAGGACAGTTGCAAAGAGGTGGTAAAGAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGATGTGTAGCTTTATTCCAGGACAGTTGCAAAGAGGTGGTAAAGAA  720

seq1  AAGATATGCTTTTAAACTAGATAAATTCCAATATCAGAAAGACAACTTTC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATATGCTTTTAAACTAGATAAATTCCAATATCAGAAAGACAACTTTC  770

seq1  TAGATATTTATGTTTCTCTGGGAATAAATTACTTATATTTAACTGGGTAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATATTTATGTTTCTCTGGGAATAAATTACTTATATTTAACTGGGTAT  820

seq1  AAACAGTTTGAGCACATTAGTCAGAAAGTCAATAGACAAATAAAACAAAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGTTTGAGCACATTAGTCAGAAAGTCAATAGACAAATAAAACAAAA  870

seq1  GCACTTCTATATGTTTACAAAGCCTTTTGCTTCCCTTGCTACTAGTCTTT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTTCTATATGTTTACAAAGCCTTTTGCTTCCCTTGCTACTAGTCTTT  920

seq1  AAAAAGCCAGCTAGTAAATAGAAGTCTTTTGAAAGTTTAATCCTGAAATT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGCCAGCTAGTAAATAGAAGTCTTTTGAAAGTTTAATCCTGAAATT  970

seq1  TTCAGCATATCACACTTAAAACATAAACATTAAGAAAAATATGTCCCTAA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGCATATCACACTTAAAACATAAACATTAAGAAAAATATGTCCCTAA  1020

seq1  GAAACAAGTTAGCTACAATGGTGCAGGTCCTGAGTATTCTAACAGTTCTA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACAAGTTAGCTACAATGGTGCAGGTCCTGAGTATTCTAACAGTTCTA  1070

seq1  AAATGTTCTTTCATTGTAGCATTTAGATCCTTTTCTTAACTTAGGAATTC  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTTCTTTCATTGTAGCATTTAGATCCTTTTCTTAACTTAGGAATTC  1120

seq1: chr2_55062538_55062956
seq2: B6Ng01-050A18.g_67_485

seq1  GAATTCACTATTGCAGACTTCCTATCTTTCAATTCGAAGTCAACTCCTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTATTGCAGACTTCCTATCTTTCAATTCGAAGTCAACTCCTGC  50

seq1  CAAGCCACCTGCTGTGATTTCTGCCCAATTCAGATTCAGGCTCCCCACCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCCACCTGCTGTGATTTCTGCCCAATTCAGATTCAGGCTCCCCACCC  100

seq1  ACTCTGTCTTGCTTAATAAAGGATCTCTTTGTGTTGGAAATTGGTGGTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGTCTTGCTTAATAAAGGATCTCTTTGTGTTGGAAATTGGTGGTTG  150

seq1  GGTGAGGTCTGTGCCTAATCTGGGTCCCTTCAGTATTCAATAATAGAAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAGGTCTGTGCCTAATCTGGGTCCCTTCAGTATTCAATAATAGAAAG  200

seq1  AAATGGGAGTTGCAGAAAAACCTGTGTTTTATAAGATAAAAATAAGAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGGAGTTGCAGAAAAACCTGTGTTTTATAAGATAAAAATAAGAAAA  250

seq1  CAGTACAACAGCAAAAGGCAGTGGCTGAAGCAGTTATGTTACATACAAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTACAACAGCAAAAGGCAGTGGCTGAAGCAGTTATGTTACATACAAGG  300

seq1  AATAAGCAAATGAAATTTCTTTGGGGTAGCTGTAATAGCCTGGCTCTTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGCAAATGAAATTTCTTTGGGGTAGCTGTAATAGCCTGGCTCTTTT  350

seq1  TCCACAGGATACACTGAAACTCCAGGGGTTGTTTTGTTTGTTTGTTTGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACAGGATACACTGAAACTCCAGGGGTTGTTTTGTTTGTTTGTTTGTT  400

seq1  TTGTGGTGTGGTGTGTGTG  419
      |||||||||||||||||||
seq2  TTGTGGTGTGGTGTGTGTG  419