BAC Information

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BAC

Clone NameB6Ng01-050C11
Chromosome2 (Build37)
Map Location 146,045,474 - 146,202,367
singlet/doubletdoublet
Overlap geneInsm1
Upstream geneSlc24a3, LOC627312, OTTMUSG00000015643, LOC433482, LOC100043810, Rin2, Nat5, Crnkl1, 4930529M08Rik, LOC100043563
Downstream geneA230067G21Rik, LOC668918, Gm114, Xrn2, Nkx2-4, Nkx2-2, LOC100043816, LOC668919, LOC668920, Pax1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-050C11.bB6Ng01-050C11.g
ACCDH874192DH874193
length1,0101,011
definitionDH874192|Mus musculus domesticus DNA, BAC clone: B6Ng01-050C11, 5' end.DH874193|Mus musculus domesticus DNA, BAC clone: B6Ng01-050C11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(146,045,474 - 146,046,487)(146,201,342 - 146,202,367)
sequence
gaattccctcgagcaaggtttttttatctttattttattatttgtttttt
tttcaattgttggtcatatgcacccccacaaattcaacacacatacacac
cttctttacagttattagtggatttttttttgtttgcttgtaagaactca
ctaggcgacgaactcttccggcagccttttgaataaaaagagtgttacat
acgcaagactaaatatcctgatgggggtagcccgtcgagccccgccccat
tattccacaacccagatgggattcgtgattaggaaataaaattggccaaa
gctgtctcggaatctccctctctcttctaatttcatcagcagtattaatc
agcgctcaaaagagcaaagaaataacagttatttccagatcgaaatatta
atggattgtaactcattttagtatttctaactttataaagactagcaacc
attacaacactttatatatttttctctcttcagttggtggttttaaaaaa
aatcatggatataaaatcataagatttctttcctctgagttaactcacct
tgacaactgtccccattacaatgtactactcaagtggattctgttgaaaa
aacaaaaaacaaacaaaaaaccaaaaccactatttaatttccaagccagg
gtatttttcagagggaaaccccaaaacgattaaatgccttcagtggaatt
taatctaaagtcaaactcagcaaaatctaggctcacttcaagagggaaaa
aatgtttctctcactttgagtaaagtgacattttctctacagctatgacc
atttgatgcgtcttggctatttgttccctggtgaggggcttcttagggat
ctacttctttccccaggaaaagaaccttctgtgttttctcagccattagc
aaggaagagatcccagacagttgccggtctggtactaatctggcgtctag
ggtggcatgtgtgtaccaggttgtcctcgttgttttctcttgccatgtga
cgggaggaaa
gaattcatgttttttctctgggcagaggcatgccaaaaggatggcttcta
gaagtattacagtatgctaaagttctattggcgaagagaggatgcctaag
ctcccgtctgcagggcaaaggttgtttgctttaaacacgactgagcttta
gagtccacgaggatatgtttggatacacgcaagcatgttaagtggcaggc
ttgctttctgtgagaatgtgcttgtgctctccttgtgtggaacaacaact
ttttatttcccctaatttctttttactgtctagcagtaagtggtggtgtg
gtaattacagattgttcagctataaatgctacttactggaacacatctta
gagagaacattgttttctaaagaaacaataaacaacagttttccttttgt
tctcttgtggaaaaatattctctggtaggtatttgtgggtagaaaaattt
gagcaaaagagacccttccagtaaggagacatagcagtaaagtacctgcc
actgttgactcatgctggaatgttcttgggcacgtacggcgtggtcattt
tgtcatgacctagtgccatatgtcatctagttggtccatccttggtcccc
gtggcacgtttgttcccatgcaggagctttgcgctctggcctgctgtcac
ccagccacatgtagcaatctccttgtctcgagaagtccttgctgaaagca
gggaggaagtgagtgacttattaaatgtctatgcaggatgtcttcaggta
gtttgactttcatttaggtttattcattttattttattaatttatttaag
tatgagtaggatttttttcttttattgaaaatagctcttttttccccaca
taacagatcctgatgatggcttcccctcccttcattctcccagtttctcc
cacctctctccatctgatccccctttcagttattagaaatagaatacttg
cagggaattataaaatatgatacaataaaataaccaaagcttaccaattg
ggtgggacaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_146045474_146046487
seq2: B6Ng01-050C11.b_44_1052

seq1  GAATTCCCTCGAGCAAGGTTTTTTTATCTTTATTTTATTATTTGTTTTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTCGAGCAAGGTTTTTTTATCTTTATTTTATTATTTGTTTTTT  50

seq1  TTTCAATTGTTGGTCATATGCACCCCCACAAATTCAACACACATACACAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAATTGTTGGTCATATGCACCCCCACAAATTCAACACACATACACAC  100

seq1  CTTCTTTACAGTTATTAGTGGATTTTTTTTTGTTTGCTTGTAAGAACTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTTACAGTTATTAGTGGATTTTTTTTTGTTTGCTTGTAAGAACTCA  150

seq1  CTAGGCGACGAACTCTTCCGGCAGCCTTTTGAATAAAAAGAGTGTTACAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGCGACGAACTCTTCCGGCAGCCTTTTGAATAAAAAGAGTGTTACAT  200

seq1  ACGCAAGACTAAATATCCTGATGGGGGTAGCCCGTCGAGCCCCGCCCCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCAAGACTAAATATCCTGATGGGGGTAGCCCGTCGAGCCCCGCCCCAT  250

seq1  TATTCCACAACCCAGATGGGATTCGTGATTAGGAAATAAAATTGGCCAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCCACAACCCAGATGGGATTCGTGATTAGGAAATAAAATTGGCCAAA  300

seq1  GCTGTCTCGGAATCTCCCTCTCTCTTCTAATTTCATCAGCAGTATTAATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTCTCGGAATCTCCCTCTCTCTTCTAATTTCATCAGCAGTATTAATC  350

seq1  AGCGCTCAAAAGAGCAAAGAAATAACAGTTATTTCCAGATCGAAATATTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGCTCAAAAGAGCAAAGAAATAACAGTTATTTCCAGATCGAAATATTA  400

seq1  ATGGATTGTAACTCATTTTAGTATTTCTAACTTTATAAAGACTAGCAACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGATTGTAACTCATTTTAGTATTTCTAACTTTATAAAGACTAGCAACC  450

seq1  ATTACAACACTTTATATATTTTTCTCTCTTCAGTTGGTGGTTTTAAAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACAACACTTTATATATTTTTCTCTCTTCAGTTGGTGGTTTTAAAAAA  500

seq1  AATCATGGATATAAAATCATAAGATTTCTTTCCTCTGAGTTAACTCACCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATGGATATAAAATCATAAGATTTCTTTCCTCTGAGTTAACTCACCT  550

seq1  TGACAACTGTCCCCATTACAATGTACTACTCAAGTGGATTCTGTTGAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAACTGTCCCCATTACAATGTACTACTCAAGTGGATTCTGTTGAAAA  600

seq1  AACAAAAAACAAACAAAAAACCAAAACCACTATTTAATTTCCAAGCCAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAAAACAAACAAAAAACCAAAACCACTATTTAATTTCCAAGCCAGG  650

seq1  GTA-TTTTCAGAGGGAAACCCCAAAACGATTAAATGCCTTCAGTGGAATT  699
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTTTCAGAGGGAAACCCCAAAACGATTAAATGCCTTCAGTGGAATT  700

seq1  TAATCT-AAGTCAAACTCAGCAAAAATCTAGGCTCACTTCAAGAGGGAAA  748
      |||||| |||||||||||||| ||||||||||||||||||||||||||||
seq2  TAATCTAAAGTCAAACTCAGC-AAAATCTAGGCTCACTTCAAGAGGGAAA  749

seq1  AAATGTTTCTCTCACTTTGAGTAAAGTGACATTTTCTCTACAGCTATGA-  797
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  AAATGTTTCTCTCACTTTGAGTAAAGTGACATTTTCTCTACAGCTATGAC  799

seq1  CATTTGATGCGTCTTGGCTATTTGTTCCCTGGTGAGGGGCTTCTTAGGGA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGATGCGTCTTGGCTATTTGTTCCCTGGTGAGGGGCTTCTTAGGGA  849

seq1  TCTACTTCTTTCCCCAAGAAAAGAACCTTCTGTGTTTTCTCAGCCATTAG  897
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TCTACTTCTTTCCCCAGGAAAAGAACCTTCTGTGTTTTCTCAGCCATTAG  899

seq1  CAGGGAAGAGATCCCTAGACAAGTTGCCGGGTCTGGGTCCAAATCTGGCG  947
      || |||||||||||| |||| ||||||| ||||| ||| | |||||||||
seq2  CAAGGAAGAGATCCC-AGAC-AGTTGCC-GGTCT-GGTACTAATCTGGCG  945

seq1  TCTAGTGTGGCGTGTGTGTACCAGGGGTGTCCTTCGTTGTTGTCTCTTGC  997
      ||||| ||||| ||||||||||| || ||||| |||||||| ||||||||
seq2  TCTAGGGTGGCATGTGTGTACCA-GGTTGTCC-TCGTTGTTTTCTCTTGC  993

seq1  CAGTGGCACGGGAGGAA  1014
      || ||  ||||||||||
seq2  CA-TGTGACGGGAGGAA  1009

seq1: chr2_146201342_146202367
seq2: B6Ng01-050C11.g_69_1079 (reverse)

seq1  TTTGTCCCACCCCAATGTGTTAGGTTTTGGTTTATTTTTATTGTATCATA  50
      ||||||||| |||||| || || | |||||||   |||||||||||||||
seq2  TTTGTCCCA-CCCAAT-TGGTAAGCTTTGGTT--ATTTTATTGTATCATA  46

seq1  TTTTATAATTATCCCTTGCAAGTATGTCTGTTTTCTAATAACTGAAAGGG  100
      ||||||||||   || ||||||||| |||  |||||||||||||||| ||
seq2  TTTTATAATT---CCCTGCAAGTAT-TCT-ATTTCTAATAACTGAAA-GG  90

seq1  GGGATCAGGATGGGAGAGGAGGTGGGAGAAACTGGGAGGAGTGAAGGGAG  150
      ||||||| ||| ||||| ||||||||||||||||||| || |||||||||
seq2  GGGATCA-GAT-GGAGA-GAGGTGGGAGAAACTGGGA-GAATGAAGGGAG  136

seq1  GGGAAGCCATCATCAGGATCTGTTATGTGGGGGAAAAAGAGCTATTTTCA  200
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  GGGAAGCCATCATCAGGATCTGTTATGTGGGGAAAAAAGAGCTATTTTCA  186

seq1  ATAAAAG-AAAAAATCCTACTCATACTTAAATAAATTAATAAAATAAAAT  249
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAGAAAAAAATCCTACTCATACTTAAATAAATTAATAAAATAAAAT  236

seq1  GAATAAACCCTAAAATGAAAGTCAAACTACCTGAAGACATCCTGCATAGA  299
      |||||||||   ||||||||||||||||||||||||||||||||||||||
seq2  GAATAAACC--TAAATGAAAGTCAAACTACCTGAAGACATCCTGCATAGA  284

seq1  CATTTAATAAGTCACTCACTTCCTCCCTGCTTTCAGCAAGGACTTCTCGA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTAATAAGTCACTCACTTCCTCCCTGCTTTCAGCAAGGACTTCTCGA  334

seq1  GACAAGGAGATTGCTACATGTGGCTGGGTGACAGCAGGCCAGAGCGCAAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAGGAGATTGCTACATGTGGCTGGGTGACAGCAGGCCAGAGCGCAAA  384

seq1  GCTCCTGCATGGGAACAAACGTGCCACGGGGACCAAGGATGGACCAACTA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCTGCATGGGAACAAACGTGCCACGGGGACCAAGGATGGACCAACTA  434

seq1  GATGACATATGGCACTAGGTCATGACAAAATGACCACGCCGTACGTGCCC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGACATATGGCACTAGGTCATGACAAAATGACCACGCCGTACGTGCCC  484

seq1  AAGAACATTCCAGCATGAGTCAACAGTGGCAGGTACTTTACTGCTATGTC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACATTCCAGCATGAGTCAACAGTGGCAGGTACTTTACTGCTATGTC  534

seq1  TCCTTACTGGAAGGGTCTCTTTTGCTCAAATTTTTCTACCCACAAATACC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTACTGGAAGGGTCTCTTTTGCTCAAATTTTTCTACCCACAAATACC  584

seq1  TACCAGAGAATATTTTTCCACAAGAGAACAAAAGGAAAACTGTTGTTTAT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAGAGAATATTTTTCCACAAGAGAACAAAAGGAAAACTGTTGTTTAT  634

seq1  TGTTTCTTTAGAAAACAATGTTCTCTCTAAGATGTGTTCCAGTAAGTAGC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCTTTAGAAAACAATGTTCTCTCTAAGATGTGTTCCAGTAAGTAGC  684

seq1  ATTTATAGCTGAACAATCTGTAATTACCACACCACCACTTACTGCTAGAC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATAGCTGAACAATCTGTAATTACCACACCACCACTTACTGCTAGAC  734

seq1  AGTAAAAAGAAATTAGGGGAAATAAAAAGTTGTTGTTCCACACAAGGAGA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAAAAGAAATTAGGGGAAATAAAAAGTTGTTGTTCCACACAAGGAGA  784

seq1  GCACAAGCACATTCTCACAGAAAGCAAGCCTGCCACTTAACATGCTTGCG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAAGCACATTCTCACAGAAAGCAAGCCTGCCACTTAACATGCTTGCG  834

seq1  TGTATCCAAACATATCCTCGTGGACTCTAAAGCTCAGTCGTGTTTAAAGC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATCCAAACATATCCTCGTGGACTCTAAAGCTCAGTCGTGTTTAAAGC  884

seq1  AAACAACCTTTGCCCTGCAGACGGGAGCTTAGGCATCCTCTCTTCGCCAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAACCTTTGCCCTGCAGACGGGAGCTTAGGCATCCTCTCTTCGCCAA  934

seq1  TAGAACTTTAGCATACTGTAATACTTCTAGAAGCCATCCTTTTGGCATGC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAACTTTAGCATACTGTAATACTTCTAGAAGCCATCCTTTTGGCATGC  984

seq1  CTCTGCCCAGAGAAAAAACATGAATTC  1026
      |||||||||||||||||||||||||||
seq2  CTCTGCCCAGAGAAAAAACATGAATTC  1011