BAC Information

Click to search

BAC

Clone NameB6Ng01-050K24
Chromosome2 (Build37)10 (Build37)
Map Location 142,776,451 - 142,777,69865,493,353 - 65,494,204
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC668913, LOC668914, Kif16b
Downstream geneSnrpb2, Otor, LOC668915, LOC668916, Pcsk2, Bfsp1, LOC100043799, LOC100043534, Dstn, Rrbp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-050K24.bB6Ng01-050K24.g
ACCDH874557DH874558
length989862
definitionDH874557|Mus musculus domesticus DNA, BAC clone: B6Ng01-050K24, 5' end.DH874558|Mus musculus domesticus DNA, BAC clone: B6Ng01-050K24, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(142,776,451 - 142,777,698)(65,493,353 - 65,494,204)
sequence
gaattctttgttcagttctgagccccattttttaatggggttatttgatt
ttctgaagtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggtct
ttttgtcttactgacggtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcaattctcgatcttacagtacaagccattgctgtt
ctgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccac
tttctcctctataagtttcagtgtctctggttttatgtgaagttccttga
tccacttagatttgaccttagtacaaggagataagtatggatcgattcgc
attcttctacacgataacaaccagttgtgccagcaccaattgttgaaaat
gctgtctttcttccactgaatggttttagctcccttgtcgaagatcaagt
gaccataggtgtgtgggttcatttctgggtcttcaattctattccattgg
tctacttgtctgtctctataccagtaccatgcagtttttatcacaattgc
tctgtagtaaagctttaggtcaggcatgatgattccaccagaggttcttt
tatccttgagaagagtttttgctatcctaggttttttgttattccagatg
aatttgcaaattgctccttctaattcgttgaagaattgagttggaatttt
gatggggattgcattgaatctgtagattgcttttggcaagataaaggcac
cccattcttgacagtggaatttccagcctggagagctttgggagatgata
aatttctgttgcttataagcatcctatctcatgatattctccagtaccag
gtcaagttactaagacaagtatccttgaatgtgcttatgtaacaccacaa
caaaattccaactccatgccatctcaccctaaaaatcaa
gaattccttcttaaatcaggaagaaacactgttgtcctgcacaatttcta
tccaagattgatcaaaaagtgctagccagtccaaaaaagtgagaaaacta
agtctttaatatttgaggtaaagaaatgttaaataaatgtattgacttac
aagagtatcttgcttaggaaactacagggctgttaagagaacatttcaaa
gtttgtctctgggagcagtgcatccatgatcttgtttcatgaagtagtgt
caagcagacattttctatcaaggtaacagctctcatgaagccagtgccta
gggaacagtgactcagccgctgctgtgtgctgcttaagcattctctggga
ggacctatggggaagatgcagttgggatttatctcaagtccttgaggtag
tataatttatttttttcttggagatctatttatgcaagtcagaaatatta
atataattataatggaaaccttaagtttattatgtgaatcaattaatata
catagaataaagtctgagactcttaaaaattctatatctctccccaaccc
caaatatatatatatagttagcacaggggaggacagaactgatatgtgca
tatgttgaactattgaactgtatatatatatatatatatatatatatata
tatatatatatatatatatatatatacacatatatacatgtctgcataaa
tatatctggggaagaataacaactcattatatatatcctcattatttaaa
tctaaaagagttctagacctgtactatgaaaaatatggaattttaaagag
taaaaatcttaaaactttaagtattattatttatttgtgggactgtataa
ctcaatattgtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_142776451_142777698
seq2: B6Ng01-050K24.b_44_831 (reverse)

seq1  TGCCAAAAGCAATCTACAGATTCAATGCAATCCCCATCAAAATTCCAACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAAAAGCAATCTACAGATTCAATGCAATCCCCATCAAAATTCCAACT  50

seq1  CAATTCTTCAACGAATTAGAAGGAGCAATTTGCAAATTCATCTGGAATAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTCTTCAACGAATTAGAAGGAGCAATTTGCAAATTCATCTGGAATAA  100

seq1  CAAAAAACCTAGGATAGCAAAAAGTCTTCTCAAGGATAAAAGAACCTCTG  150
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  CAAAAAACCTAGGATAGCAAAAACTCTTCTCAAGGATAAAAGAACCTCTG  150

seq1  GTGGAATCACCATGCCTGACCTAAAGCTTTACTACAGAGCAATTGTGATA  200
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAATCATCATGCCTGACCTAAAGCTTTACTACAGAGCAATTGTGATA  200

seq1  AAAACTGCATGGTACTGGTATAGAGACAGACAAGTAGACCAATGGAATAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTGCATGGTACTGGTATAGAGACAGACAAGTAGACCAATGGAATAG  250

seq1  AATTGAAGACCCAGAAATGAACCCACACACCTATGGTCACTTGATCTTCG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGAAGACCCAGAAATGAACCCACACACCTATGGTCACTTGATCTTCG  300

seq1  ACAAGGGAGCTAAAACCATCCAGAGGAAGAAAGACAGCATTTTCAACAAT  350
      ||||||||||||||||||| ||| ||||||||||||||||||||||||||
seq2  ACAAGGGAGCTAAAACCATTCAGTGGAAGAAAGACAGCATTTTCAACAAT  350

seq1  TGGTGCTGGCACAACTGGTTGTTATCATGTAGAAGAATGGGAATCGATCC  400
      |||||||||||||||||||||||||| |||||||||||| ||||||||||
seq2  TGGTGCTGGCACAACTGGTTGTTATCGTGTAGAAGAATGCGAATCGATCC  400

seq1  ATACTTATCTCCTTGTACTAAGGTCAAATCTAAGTGGATCAAGGAACTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTTATCTCCTTGTACTAAGGTCAAATCTAAGTGGATCAAGGAACTTC  450

seq1  ACATAAAACCAGAGACACTGAAACTTATAGAGGAGAAAGTGGGGAAAAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAAAACCAGAGACACTGAAACTTATAGAGGAGAAAGTGGGGAAAAGC  500

seq1  CTTGAAGATATGGGCACAGGGGACAAATTCCTGAACAGAACAGCAATGGC  550
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  CTTGAAGATATGGGCACAGGGGAAAAATTCCTGAACAGAACAGCAATGGC  550

seq1  TTGTGCTGTAAGATCGAGAATTGACAAATGGGACCTAATGAAACTCCAAA  600
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTACTGTAAGATCGAGAATTGACAAATGGGACCTAATGAAACTCCAAA  600

seq1  GTTTCTGCAAGGCAAAAGACACCGTCAATAAGACAAAAAGACCACCAACA  650
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  GTTTCTGCAAGGCAAAAGACACCGTCAGTAAGACAAAAAGACCACCAACA  650

seq1  GATTGGGAAAGGATCTTTACCTATCCTAAATCAGATAGGGGACTAATATC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGGGAAAGGATCTTTACCTATCCTAAATCAGATAGGGGACTAATATC  700

seq1  CAACATATATAAAGAACTCAAGAAGGTGGACTTCAGAAAATCAAATAACC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACATATATAAAGAACTCAAGAAGGTGGACTTCAGAAAATCAAATAACC  750

seq1  CCATTAAAAAATGGGGCTCACAAAACCATCCAGTGGAAGAAAGACAGCAT  800
      |||||||||||||||||||| ||            ||| |||||    ||
seq2  CCATTAAAAAATGGGGCTCAGAA----------CTGAACAAAGA----AT  786

seq1  TTTCAACAATTGGTGCTGGCACAACTGGTTGTTATCATGTAGAAGAATGC  850
      |                                                 
seq2  TC------------------------------------------------  788

seq1  GAATCGATCCATACTTATCTCCTTGTACTAAGGTCAAATCTAAGTGGATC  900
                                                        
seq2  --------------------------------------------------  788

seq1  AAGGAACTTCACATAAAACCAGAGACACTGAAACTTATAGAGGAGAAAGT  950
                                                        
seq2  --------------------------------------------------  788

seq1  GGGGAAAAGCCTTGAAGATATGGGCACAGGGGAAAAATTCCTGAACAGAA  1000
                                                        
seq2  --------------------------------------------------  788

seq1  GAGCAATGGCTTGTGCTGTAAGATCGAGAATTGACAAATGGGACCTAATG  1050
                                                        
seq2  --------------------------------------------------  788

seq1  AAACTCCAAAGTTTCTGCAAGGCAAAAGACACTGTCTATAAGACAAAAAG  1100
                                                        
seq2  --------------------------------------------------  788

seq1  ACCACCAACAGACTGGGAAAGGATCTTTACCTATCCTAAATCAGATAGGG  1150
                                                        
seq2  --------------------------------------------------  788

seq1  GACTAATATCCAACATATATAAAGAACTCAAGAAGGTGGACCTCAGAAAA  1200
                                                        
seq2  --------------------------------------------------  788

seq1  TCAAATAACCCCATTAAAAAATGGGGCTCAGAACTGAACAAAGAATTC  1248
                                                      
seq2  ------------------------------------------------  788

seq1: chr10_65493353_65494204
seq2: B6Ng01-050K24.g_69_930

seq1  GAATTCCTTCTTAAATCAGGAAGAAACACTGTTGTCCTGCACAATTTCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTCTTAAATCAGGAAGAAACACTGTTGTCCTGCACAATTTCTA  50

seq1  TCCAAGATTGATCAAAAAGTGCTAGCCAGTCCAAAAAAGTGAGAAAACTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAGATTGATCAAAAAGTGCTAGCCAGTCCAAAAAAGTGAGAAAACTA  100

seq1  AGTCTTTAATATTTGAGGTAAAGAAATGTTAAATAAATGTATTGACTTAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTTTAATATTTGAGGTAAAGAAATGTTAAATAAATGTATTGACTTAC  150

seq1  AAGAGTATCTTGCTTAGGAAACTACAGGGCTGTTAAGAGAACATTTCAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGTATCTTGCTTAGGAAACTACAGGGCTGTTAAGAGAACATTTCAAA  200

seq1  GTTTGTCTCTGGGAGCAGTGCATCCATGATCTTGTTTCATGAAGTAGTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTCTCTGGGAGCAGTGCATCCATGATCTTGTTTCATGAAGTAGTGT  250

seq1  CAAGCAGACATTTTCTATCAAGGTAACAGCTCTCATGAAGCCAGTGCCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCAGACATTTTCTATCAAGGTAACAGCTCTCATGAAGCCAGTGCCTA  300

seq1  GGGAACAGTGACTCAGCCGCTGCTGTGTGCTGCTTAAGCATTCTCTGGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAACAGTGACTCAGCCGCTGCTGTGTGCTGCTTAAGCATTCTCTGGGA  350

seq1  GGACCTATGGGGAAGATGCAGTTGGGATTTATCTCAAGTCCTTGAGGTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCTATGGGGAAGATGCAGTTGGGATTTATCTCAAGTCCTTGAGGTAG  400

seq1  TATAATTTATTTTTTTCTTGGAGATCTATTTATGCAAGTCAGAAATATTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATTTATTTTTTTCTTGGAGATCTATTTATGCAAGTCAGAAATATTA  450

seq1  ATATAATTATAATGGAAACCTTAAGTTTATTATGTGAATCAATTAATATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAATTATAATGGAAACCTTAAGTTTATTATGTGAATCAATTAATATA  500

seq1  CATAGAATAAAGTCTGAGACTCTTAAAAATTCTATATCTCTCCCCAACCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGAATAAAGTCTGAGACTCTTAAAAATTCTATATCTCTCCCCAACCC  550

seq1  CAAATATATATATATAGTTAGCACAGGGGAGGACAGAACTGATATGTGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATATATATATATAGTTAGCACAGGGGAGGACAGAACTGATATGTGCA  600

seq1  TATGTTGAACTATTGAACTG----------TATATATATATATATATATA  640
      ||||||||||||||||||||          ||||||||||||||||||||
seq2  TATGTTGAACTATTGAACTGTATATATATATATATATATATATATATATA  650

seq1  TATATATATATATATATATATATATACACATATATCCATGACTGCTGAAT  690
      ||||||||||||||||||||||||||||||||||| |||| ||||  || 
seq2  TATATATATATATATATATATATATACACATATATACATGTCTGCATAAA  700

seq1  GTTATCTGGGGAAGCAATAACAACTCATAATA-ATATCCCCATTA-TTAA  738
        |||||||||||| ||||||||||||| ||| |||||| ||||| ||||
seq2  TATATCTGGGGAAG-AATAACAACTCATTATATATATCCTCATTATTTAA  749

seq1  ATCTAGAAGCATACAAGACCTGTACTATGAAAATAATGAAATATTTAAAG  788
      ||||| |||  | | ||||||||||||||||||  ||| ||| |||||||
seq2  ATCTAAAAGAGTTCTAGACCTGTACTATGAAAAATATGGAAT-TTTAAAG  798

seq1  AGTAAAAATCTTAAAACATATAAGTATTATTATTTATTTGT-GGACTGTA  837
      ||||||||||||||||| | ||||||||||||||||||||| ||||||||
seq2  AGTAAAAATCTTAAAAC-TTTAAGTATTATTATTTATTTGTGGGACTGTA  847

seq1  TTACTCAATATTGTT  852
      | |||||||||||||
seq2  TAACTCAATATTGTT  862