BAC Information

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BAC

Clone NameB6Ng01-052E09
Chromosome2 (Build37)
Map Location 120,205,420 - 120,361,061
singlet/doubletdoublet
Overlap geneTmem87a, Ganc, Capn3, Zfp106
Upstream geneInoc1, LOC100043612, Exdl1, 1500003O03Rik, LOC100043307, Oip5, Nusap1, Ndufaf1, LOC625328, LOC100043622, Rtf1, Itpka, Ltk, Rpap1, Tyro3, 6330405D24Rik, LOC625403, Mga, Mapkbp1, Pla2g4b, Spnb5, Ehd4, Pla2g4e, LOC100043635, Pla2g4d, Pla2g4f, Vps39
Downstream geneSnap23, Lrrc57, Cep27, Stard9, Cdan1, Ttbk2, Ubr1, Tmem62, Rnu3b-ps2, Ccndbp1, Epb4.2, Tgm5, LOC640543, Lcmt2, Adal, Zscan29, D2Ertd435e, Trp53bp1, Mtap1a, Hisppd2a, Ckmt1, Strc, Catsper2, Pdia3, Ell3, Serf2, LOC574418, 2310003F16Rik, Mfap1b, Wdr76p, Mfap1a, Wdr76
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-052E09.bB6Ng01-052E09.g
ACCDH875673DH875674
length1,1161,084
definitionDH875673|Mus musculus domesticus DNA, BAC clone: B6Ng01-052E09, 5' end.DH875674|Mus musculus domesticus DNA, BAC clone: B6Ng01-052E09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(120,205,420 - 120,206,543)(120,359,971 - 120,361,061)
sequence
gaattctcaggagatctctccagtagcaagcagaccatgccagccagaga
acaccaaatagtacgtacacaatacacatcaccatgaaaaactgttatcc
aattgggaatgaaataaaaagcagaattagagccaagaacaaattattca
gatttaaaatcagcatacaataaatataaaaacctcaaacagtctctacc
ttctcttcgaaaaataactgtatctctagcatgtaatactaataaataag
aaagaatgatctagtctagatctagaatgatgtagactagaggcagacta
cagaaataactgtcctcaaaagtgcctgctccttgcactgattgggcctt
tttagctcagaattcagtgataaagtgaagacagcagtgcagacaacaga
gacctgacaagtcatgactcaagaaacacaactgaagaggaaaactacta
aaggcaagggagagagagggatcatgaacacaagtctgcaaacagacaag
gtcctcagcacaggcttatgcggtctgcacactcatataaagatgatgat
acatgcttcagtcactgtgagcgggcccagagctgggtatccactgttct
agagcccaaatgtatgctgtgagggggctactgagattctccaggccaca
agtcatgacaatttcatcctacagataaaggggtcccacaggactacata
cactctctcaaggtcactgtctaataagaagttaggggctggggaggtgt
ctcagtgggttaggaacaactgtttgctcttgcagaggacctggactgag
tttcccagcatgcacataggggctcacaataacctttaactgtagttcaa
ggggatccaatgactttgtctaatctctgccggcacgaggttctcatata
gtacacatcggaacaggcaaacacttacaccccttatgtaaattagaaat
ctatttaaaagtttaccacaaaacctcagtagcatttctgaatggcactg
ggatatcctttgaactgctacaaacagacaatttcttattaatttttctg
acaaggttaaaagacatgttgacttacaatcactcgtgggtagttttcag
agtaaggattcatagg
gaattccagttggcattctgaaggaacaggtggctttcccagctggcaca
tgaacaacagtaacggaaactggaaatccagtgtacgtagtacgaatagc
tggaattacaatggccctggagacaaatttcaacaaggcagaaacagaaa
tcctaactatcaaatggaagacatgaccaagatgtggaacaagaaatcta
ataagccaagcaagtacagtcaggagagatgcaagtggcagaggcaagac
agggacaaagctgccaagtacaggagtcctcctgagggatacgcaagcga
tacgtttccttcagaaggcttacttgagttcaattttgaacagcgagaaa
gtcaaaccactaaacaaacagacacggcagcctcaaaaattaatggaaaa
aatggcaccaaagcaagggacaagttccgccgctggacaccttacccttc
ccagaagactctagatttacagtcagccctgaaagaagtcattggcagca
agtcagacacactagagaagcctctctttaattttagcttaataactgca
ggactgcgcaaaccagttgataaaacaagtaatcctccagtgataaaaac
acaaaaagcaggacctcctggatctcccagtcacaaagccatttctgatg
gcactgctttctgtgaggtgccaagagcttgccccattaccgagcaatct
gagccacatcagaagtcaaataagattccattactgaaatccccactcct
tccacttccaacccctaaatcagtcctcataagcaaaatttaaagaaccg
ctcaaaaataaggagacaaagtcctttccttctggagatcactcacatct
cctgaacacttctactttagaaggtagccattgttcttcctacacatcca
aatcacgcgggtttatgtcctcgtgtttaaaggagattaaactgtatcag
gcactcaaaaagaacctgacgagaagttaaatagcacatcacagaaagcc
caagacacagtgctacagtgtcccaaaaactgcaaaatcactcccttacc
cacccataaggacggaaacgatgcaaagaaagta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_120205420_120206543
seq2: B6Ng01-052E09.b_43_1158

seq1  GAATTCTCAGGAGATCTCTCCAGTAGCAAGCAGACCATGCCAGCCAGAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAGGAGATCTCTCCAGTAGCAAGCAGACCATGCCAGCCAGAGA  50

seq1  ACACCAAATAGTACGTACACAATACACATCACCATGAAAAACTGTTATCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCAAATAGTACGTACACAATACACATCACCATGAAAAACTGTTATCC  100

seq1  AATTGGGAATGAAATAAAAAGCAGAATTAGAGCCAAGAACAAATTATTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGGGAATGAAATAAAAAGCAGAATTAGAGCCAAGAACAAATTATTCA  150

seq1  GATTTAAAATCAGCATACAATAAATATAAAAACCTCAAACAGTCTCTACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTAAAATCAGCATACAATAAATATAAAAACCTCAAACAGTCTCTACC  200

seq1  TTCTCTTCGAAAAATAACTGTATCTCTAGCATGTAATACTAATAAATAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTTCGAAAAATAACTGTATCTCTAGCATGTAATACTAATAAATAAG  250

seq1  AAAGAATGATCTAGTCTAGATCTAGAATGATGTAGACTAGAGGCAGACTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAATGATCTAGTCTAGATCTAGAATGATGTAGACTAGAGGCAGACTA  300

seq1  CAGAAATAACTGTCCTCAAAAGTGCCTGCTCCTTGCACTGATTGGGCCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAATAACTGTCCTCAAAAGTGCCTGCTCCTTGCACTGATTGGGCCTT  350

seq1  TTTAGCTCAGAATTCAGTGATAAAGTGAAGACAGCAGTGCAGACAACAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGCTCAGAATTCAGTGATAAAGTGAAGACAGCAGTGCAGACAACAGA  400

seq1  GACCTGACAAGTCATGACTCAAGAAACACAACTGAAGAGGAAAACTACTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTGACAAGTCATGACTCAAGAAACACAACTGAAGAGGAAAACTACTA  450

seq1  AAGGCAAGGGAGAGAGAGGGATCATGAACACAAGTCTGCAAACAGACAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCAAGGGAGAGAGAGGGATCATGAACACAAGTCTGCAAACAGACAAG  500

seq1  GTCCTCAGCACAGGCTTATGCGGTCTGCACACTCATATAAAGATGATGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTCAGCACAGGCTTATGCGGTCTGCACACTCATATAAAGATGATGAT  550

seq1  ACATGCTTCAGTCACTGTGAGCGGGCCCAGAGCTGGGTATCCACTGTTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGCTTCAGTCACTGTGAGCGGGCCCAGAGCTGGGTATCCACTGTTCT  600

seq1  AGAGCCCAAATGTATGCTGTGAGGGGGCTACTGAGATTCTCCAGGCCACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCCCAAATGTATGCTGTGAGGGGGCTACTGAGATTCTCCAGGCCACA  650

seq1  AGTCATGACAATTTCATCCTACAGATAAAGGGGTCCCACAGGACTACATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCATGACAATTTCATCCTACAGATAAAGGGGTCCCACAGGACTACATA  700

seq1  CACTCTCTCAAGGTCACTGTCTAATAAGAAGTTAGGGGCTGGGGAGGTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCTCTCAAGGTCACTGTCTAATAAGAAGTTAGGGGCTGGGGAGGTGT  750

seq1  CTCAGT-GGTTAGGAACAACTG-TTGCTCTTGCAGAGGACCTGGACTGAG  798
      |||||| ||||||||||||||| |||||||||||||||||||||||||||
seq2  CTCAGTGGGTTAGGAACAACTGTTTGCTCTTGCAGAGGACCTGGACTGAG  800

seq1  -TTCCCAGCATGCACATAGGGGCTCACAATAACC-TTAACTGTAGTTCAA  846
       ||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TTTCCCAGCATGCACATAGGGGCTCACAATAACCTTTAACTGTAGTTCAA  850

seq1  GGGGATCCAATGACTTTGTCTAATCTCTGCCGGCACGAGGTTCTCATATA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGATCCAATGACTTTGTCTAATCTCTGCCGGCACGAGGTTCTCATATA  900

seq1  GTACACAATCGGAACAGGCAAAACACTTACACCCCTAATGTAAAATAAGA  946
      |||||| |||||||||||| |||||||||||||||| ||||||| ||   
seq2  GTACAC-ATCGGAACAGGC-AAACACTTACACCCCTTATGTAAATTA--G  946

seq1  AAATCTAATTTAAAAAGTTAACACCAAAACCTCAAGTAGCATTTTCTGAA  996
      |||||||  || ||||||| ||  ||||||||| ||||||| ||||||||
seq2  AAATCTA--TTTAAAAGTTTACCACAAAACCTC-AGTAGCA-TTTCTGAA  992

seq1  TGGCACTGGGATAATCCTTGATACTGCTACAAAACAGACAATTTCATATT  1046
      |||||||||||| ||||||   |||||||| |||||||||||||| ||||
seq2  TGGCACTGGGAT-ATCCTTTGAACTGCTAC-AAACAGACAATTTCTTATT  1040

seq1  AA-TTTACTGACAAGGTTAAAAAGACATGTTGACTTACAATCATCAGTGG  1095
      || ||| ||||||||||| ||||||||||||||||||||||||   ||||
seq2  AATTTTTCTGACAAGGTT-AAAAGACATGTTGACTTACAATCACTCGTGG  1089

seq1  GTAGTCTTCAAGAGTAAGGTATTCATAGG  1124
      ||||| ||| ||||||||| |||||||||
seq2  GTAGTTTTC-AGAGTAAGG-ATTCATAGG  1116

seq1: chr2_120359971_120361061
seq2: B6Ng01-052E09.g_69_1152 (reverse)

seq1  TACTTTCTTTTGCATCGTTCTCCGTCCTTTTGGGTGTGGTAGGGAGTGGA  50
      ||||||| ||||||||||| ||||||||| |||||| |  ||||||| ||
seq2  TACTTTC-TTTGCATCGTT-TCCGTCCTTATGGGTGGGTAAGGGAGT-GA  47

seq1  TTCTGCAGTGTTTTGGGACACTGTAGCACTGTGTCTTGGGCTTTCTGTGA  100
      || |||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGCAGT-TTTTGGGACACTGTAGCACTGTGTCTTGGGCTTTCTGTGA  96

seq1  TGTGCTATTTAACTTCTCGTCAGGTTCTTTTTGAGTGCCTGATACAGTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TGTGCTATTTAACTTCTCGTCAGGTTCTTTTTGAGTGCCTGATACAG-TT  145

seq1  TATTCTCCTTTAAAACACGAGGACATAAA-CCGCGTGATTTGGATGTGTA  199
      || |||||||| ||||||||||||||||| ||||||||||||||||||||
seq2  TAATCTCCTTT-AAACACGAGGACATAAACCCGCGTGATTTGGATGTGTA  194

seq1  GGAAGAACCATGGCTACCTTCTAAAGTAGAAGTGTTCAGGAGATGTGAGT  249
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGAACAATGGCTACCTTCTAAAGTAGAAGTGTTCAGGAGATGTGAGT  244

seq1  GATCTCCAGAAGGAAAGGACTTTGTCTCCTTATTTTTTGAGCGGTTCTTT  299
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  GATCTCCAGAAGGAAAGGACTTTGTCTCCTTA-TTTTTGAGCGGTTCTTT  293

seq1  AAATTTTGCTTATGAGGACCTGATTTAGGGGTTGGAAGTGGAAGGAGTGG  349
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  AAATTTTGCTTATGAGGA-CTGATTTAGGGGTTGGAAGTGGAAGGAGTGG  342

seq1  GGATTTCAGTAATGGAATCTTATTTGACTTCTGATGTGGCTCAGATTGCT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTTCAGTAATGGAATCTTATTTGACTTCTGATGTGGCTCAGATTGCT  392

seq1  CGGTAATGGGGCAAGCTCTTGGCACCTCACAGAAAGCAGTGCCATCAGAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTAATGGGGCAAGCTCTTGGCACCTCACAGAAAGCAGTGCCATCAGAA  442

seq1  ATGGCTTTGTGACTGGGAGATCCAGGAGGTCCTGCTTTTTGTGTTTTTAT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCTTTGTGACTGGGAGATCCAGGAGGTCCTGCTTTTTGTGTTTTTAT  492

seq1  CACTGGAGGATTACTTGTTTTATCAACTGGTTTGCGCAGTCCTGCAGTTA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGGAGGATTACTTGTTTTATCAACTGGTTTGCGCAGTCCTGCAGTTA  542

seq1  TTAAGCTAAAATTAAAGAGAGGCTTCTCTAGTGTGTCTGACTTGCTGCCA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGCTAAAATTAAAGAGAGGCTTCTCTAGTGTGTCTGACTTGCTGCCA  592

seq1  ATGACTTCTTTCAGGGCTGACTGTAAATCTAGAGTCTTCTGGGAAGGGTA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACTTCTTTCAGGGCTGACTGTAAATCTAGAGTCTTCTGGGAAGGGTA  642

seq1  AGGTGTCCAGCGGCGGAACTTGTCCCTTGCTTTGGTGCCATTTTTTCCAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGTCCAGCGGCGGAACTTGTCCCTTGCTTTGGTGCCATTTTTTCCAT  692

seq1  TAATTTTTGAGGCTGCCGTGTCTGTTTGTTTAGTGGTTTGACTTTCTCGC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTTTGAGGCTGCCGTGTCTGTTTGTTTAGTGGTTTGACTTTCTCGC  742

seq1  TGTTCAAAATTGAACTCAAGTAAGCCTTCTGAAGGAAACGTATCGCTTGC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCAAAATTGAACTCAAGTAAGCCTTCTGAAGGAAACGTATCGCTTGC  792

seq1  GTATCCCTCAGGAGGACTCCTGTACTTGGCAGCTTTGTCCCTGTCTTGCC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCCCTCAGGAGGACTCCTGTACTTGGCAGCTTTGTCCCTGTCTTGCC  842

seq1  TCTGCCACTTGCATCTCTCCTGACTGTACTTGCTTGGCTTATTAGATTTC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCACTTGCATCTCTCCTGACTGTACTTGCTTGGCTTATTAGATTTC  892

seq1  TTGTTCCACATCTTGGTCATGTCTTCCATTTGATAGTTAGGATTTCTGTT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCCACATCTTGGTCATGTCTTCCATTTGATAGTTAGGATTTCTGTT  942

seq1  TCTGCCTTGTTGAAATTTGTCTCCAGGGCCATTGTAATTCCAGCTATTCG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCTTGTTGAAATTTGTCTCCAGGGCCATTGTAATTCCAGCTATTCG  992

seq1  TACTACGTACACTGGATTTCCAGTTTCCGTTACTGTTGTTCATGTGCCAG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTACGTACACTGGATTTCCAGTTTCCGTTACTGTTGTTCATGTGCCAG  1042

seq1  CTGGGAAAGCCACCTGTTCCTTCAGAATGCCAACTGGAATTC  1091
      ||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGAAAGCCACCTGTTCCTTCAGAATGCCAACTGGAATTC  1084