BAC Information

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BAC

Clone NameB6Ng01-053A13
Chromosome2 (Build37)5 (Build37)
Map Location 142,776,319 - 142,776,81731,582,994 - 31,583,945
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC668913, LOC668914, Kif16b
Downstream geneSnrpb2, Otor, LOC668915, LOC668916, Pcsk2, Bfsp1, LOC100043799, LOC100043534, Dstn, Rrbp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-053A13.bB6Ng01-053A13.g
ACCDH876205DH876206
length963943
definitionDH876205|Mus musculus domesticus DNA, BAC clone: B6Ng01-053A13, 5' end.DH876206|Mus musculus domesticus DNA, BAC clone: B6Ng01-053A13, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(142,776,319 - 142,776,817)(31,582,994 - 31,583,945)
sequence
gaattctttgtttagctctgagccccattttttaatggggttatttgatt
tttctggaggccatcgtcttgagctctttatatatgttggatattagtcc
cctatcagatttaggattggtaaaaattcttcctcaatcggttggtggcc
tttttgtcttattgacagtgtcttttgccttacagaagctttgcaatttt
atgaggtcccatttgtcaattcttcatcttacaacacaagccattgctgt
tctgttcaggaatttttcctctgtgcccataccttcaaggcttttcctca
ctttctcctctataagtttcagtgtctctggctttaatgcgagttccttg
atccacttagacatgagctttgtacaaggagataagaatagaccaattca
cgatcttctatgtgctaactgacagttgagtcagcaccatttgttgaaaa
tgctgtcttttttccactgaatgtttttagctcctttgtcaaagatcaag
tgaccataggtgtgtgggttcatatctgggtcttcaattctattccattg
atctacctgtctgtcattgtaccggtaccatgcagttttgttttgttttg
ttttgttttgttttgttttgttttgttttgttttgtttttatcacaattg
ctctgtagtacagcttgaggtcaggcatggtaattcccccagaggttctt
ttatcattgagaataatttttgctatcctaggatttttttattccggaag
aatttgaaaattgccttttctaactcggtgaggaattgagttggaatttt
gatggggattgcattgactatagattgctttcggcaggatagccattttt
actatattgatcctgccatccatgagcatgggagatcttttcatcttctg
agatctctttatttcttctcagagacttgaagttcttatcatacagatct
ttcccttcctaag
gaattctcctggccttcaagggttcagagaaccttgtcaggttacctgat
gaggtgagggttcatgaattcggtgcgcacagaacccaaggagtcgttac
tcccatattccaccagggtcagctctccagcattgaagatcatgcacacc
tggggagaatgggagaggggcgaggagaaaaacagtgggaggggtagtat
agtttagggtgacttctccttctcttttcctgctcgacccccaccgtcta
cctgctggctcctgcccctcccactcagccttctgactaggagctggaat
gaggtttataggcatgctggcaggggctgagttctacttacattctcatt
ttcaaagaaatatttctcattgcccccagatccctgccaggctatctgca
aagtaaggagaaaacaccagagacaatgtagagaattacccaagacaagg
ccgggagacctcaatcggggaggtttcagtgctgcatggaagatgcgctg
tgtcagagccttgccttgcttcctacactttcagaggtggctgtgtaaaa
acagcctgactaaagaaattcatactccaggattttacccctctcacttc
ttgaaacaaggtcaccaccatcagaatgtcagggcctcttttggggatct
tacctcttggggtcctggtccccagaattagccaagacatcccgttgccc
aatcttgcatccttggtccctacctcgctgaggcggttcgtgttcaggtc
tcccagcagcagtgtgtctgatgtgtgagccaccagtaacgttcctttcc
caggattttcacctcttctacttcataccatagtgtgacttgagcaccac
cctggttcctgaagacaggttcttcaaatcactggtaaggacaagtgtga
gccttcacccttcccagcacagagaatacgaaagtgcttgcct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_142776319_142776817
seq2: B6Ng01-053A13.b_471_1011 (reverse)

seq1  CTAAGGAAGTGAAAGATCTGTATGATAAAAACTTCAAGTCTCTGAAGAAA  50
      || |||||| |||||||||||||||||| ||||||||||||||||   ||
seq2  CTTAGGAAGGGAAAGATCTGTATGATAAGAACTTCAAGTCTCTGA--GAA  48

seq1  GAAATTAAAGAAGATCTCAGAAGATGGAAGGATCTCCCATGCTCATGGAT  100
      |||| ||||| ||||||||||||||| || ||||||||||||||||||| 
seq2  GAAA-TAAAG-AGATCTCAGAAGATGAAAAGATCTCCCATGCTCATGGA-  95

seq1  TGGCAGGATCAACATTGTAAAAATGGCTATCTTGCCAAAAGCAATCTACA  150
      |||||||||||| || ||||||||||||||| |||| ||||||||||| |
seq2  TGGCAGGATCAATATAGTAAAAATGGCTATCCTGCCGAAAGCAATCTATA  145

seq1  GATTCAATGCAATCCCCATCAAAATTCCAACTCAATTCTTCAACGAATTA  200
      |  ||||||||||||||||||||||||||||||||||| ||| ||| |||
seq2  G--TCAATGCAATCCCCATCAAAATTCCAACTCAATTCCTCACCGAGTTA  193

seq1  GAAGGAGCAATTTGCAAATTCATCTGGAATAACAAAAAACCTAGGATAGC  250
      |||   ||||||| ||||||| || ||||||| ||||| |||||||||||
seq2  GAAAAGGCAATTTTCAAATTCTTCCGGAATAA-AAAAATCCTAGGATAGC  242

seq1  AAAAAGTCTTCTCAAGGATAAAAGAACCTCTGGTGGAATCACCATGCCTG  300
      ||||| | ||||||| ||||||||||||||||| ||||| ||||||||||
seq2  AAAAATTATTCTCAATGATAAAAGAACCTCTGGGGGAATTACCATGCCTG  292

seq1  ACCTAAAGCTTTACTACAGAGCAATTGTGATA------------------  332
      |||| ||||| |||||||||||||||||||||                  
seq2  ACCTCAAGCTGTACTACAGAGCAATTGTGATAAAAACAAAACAAAACAAA  342

seq1  --------------------------------AAAACTGCATGGTACTGG  350
                                      ||||||||||||||| ||
seq2  ACAAAACAAAACAAAACAAAACAAAACAAAACAAAACTGCATGGTACCGG  392

seq1  TATAGAGACAGACAAGTAGACCAATGGAATAGAATTGAAGACCCAGAAAT  400
      || |  |||||||| ||||| |||||||||||||||||||||||||| ||
seq2  TACAATGACAGACAGGTAGATCAATGGAATAGAATTGAAGACCCAGATAT  442

seq1  GAACCCACACACCTATGGTCACTTGATCTTCGACAAGGGAGCTAAAACCA  450
      |||||||||||||||||||||||||||||| ||||| |||||||||| ||
seq2  GAACCCACACACCTATGGTCACTTGATCTTTGACAAAGGAGCTAAAAACA  492

seq1  TCCAGAGGAAGAAAGACAGCATTTTCAACAATTGGTGCTGGCACAACTG  499
      | ||| |||| |||||||||||||||||||| |||||||| | ||||||
seq2  TTCAGTGGAAAAAAGACAGCATTTTCAACAAATGGTGCTGACTCAACTG  541

seq1: chr5_31582994_31583945
seq2: B6Ng01-053A13.g_68_1010

seq1  GAATTCTCCTGGCCTTCAAGGGTTCAGAGAACCTTGTCAGGTTACCTGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCTGGCCTTCAAGGGTTCAGAGAACCTTGTCAGGTTACCTGAT  50

seq1  GAGGTGAGGGTTCATGAATTCGGTGCGCACAGAACCCAAGGAGTCGTTAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTGAGGGTTCATGAATTCGGTGCGCACAGAACCCAAGGAGTCGTTAC  100

seq1  TCCCATATTCCACCAGGGTCAGCTCTCCAGCATTGAAGATCATGCACACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCATATTCCACCAGGGTCAGCTCTCCAGCATTGAAGATCATGCACACC  150

seq1  TGGGGAGAATGGGAGAGGGGCGAGGAGAAAAACAGTGGGAGGGGTAGTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGAGAATGGGAGAGGGGCGAGGAGAAAAACAGTGGGAGGGGTAGTAT  200

seq1  AGTTTAGGGTGACTTCTCCTTCTCTTTTCCTGCTCGACCCCCACCGTCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTAGGGTGACTTCTCCTTCTCTTTTCCTGCTCGACCCCCACCGTCTA  250

seq1  CCTGCTGGCTCCTGCCCCTCCCACTCAGCCTTCTGACTAGGAGCTGGAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTGGCTCCTGCCCCTCCCACTCAGCCTTCTGACTAGGAGCTGGAAT  300

seq1  GAGGTTTATAGGCATGCTGGCAGGGGCTGAGTTCTACTTACATTCTCATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTTTATAGGCATGCTGGCAGGGGCTGAGTTCTACTTACATTCTCATT  350

seq1  TTCAAAGAAATATTTCTCATTGCCCCCAGATCCCTGCCAGGCTATCTGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAAGAAATATTTCTCATTGCCCCCAGATCCCTGCCAGGCTATCTGCA  400

seq1  AAGTAAGGAGAAAACACCAGAGACAATGTAGAGAATTACCCAAGACAAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAAGGAGAAAACACCAGAGACAATGTAGAGAATTACCCAAGACAAGG  450

seq1  CCGGGAGACCTCAATCGGGGAGGTTTCAGTGCTGCATGGAAGATGCGCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGGAGACCTCAATCGGGGAGGTTTCAGTGCTGCATGGAAGATGCGCTG  500

seq1  TGTCAGAGCCTTGCCTTGCTTCCTACACTTTCAGAGGTGGCTGTGTAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAGAGCCTTGCCTTGCTTCCTACACTTTCAGAGGTGGCTGTGTAAAA  550

seq1  ACAGCCTGACTAAAGAAATTCATACTCCAGGATTTTACCCCTCTCACTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCCTGACTAAAGAAATTCATACTCCAGGATTTTACCCCTCTCACTTC  600

seq1  TTGAAACAAGGTCACCACCATCAGAATGTCAGGGCCTCTTTTGGGGATCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAACAAGGTCACCACCATCAGAATGTCAGGGCCTCTTTTGGGGATCT  650

seq1  TACCTCTTGGGGTCCTGGTCCCCAGAATTAGCCAAGACATCCCGTTGCCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTCTTGGGGTCCTGGTCCCCAGAATTAGCCAAGACATCCCGTTGCCC  700

seq1  AATCTTGCATCCTTGGTCCCTACCTCGCTGAGGCGGTTCGTGTTCAGGTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTGCATCCTTGGTCCCTACCTCGCTGAGGCGGTTCGTGTTCAGGTC  750

seq1  TCCCAGCAGCAGTGTGTCTGATGTGTGAGCCACCAAGTAACGTTCCTTTC  800
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TCCCAGCAGCAGTGTGTCTGATGTGTGAGCCACC-AGTAACGTTCCTTTC  799

seq1  CCAGGATTTTCACCTCTTCTACTTCATAGCCATAGTGTGACTTGAGCACC  850
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  CCAGGATTTTCACCTCTTCTACTTCATA-CCATAGTGTGACTTGAGCACC  848

seq1  ACCCTGGTCCCTGAAGACAGGTTCTTCACAATCACCTGGTAAGGGACAAG  900
      |||||||| ||||||||||||||||||| ||||| ||||||| |||||||
seq2  ACCCTGGTTCCTGAAGACAGGTTCTTCA-AATCA-CTGGTAA-GGACAAG  895

seq1  TGTGAGCCCTTCAGCCTTTCCCAGCACAGAAGAGAAGCGAAGGTGCTTGC  950
      |||||| |||||| || |||||||||||||  | |  |||| ||||||||
seq2  TGTGAG-CCTTCA-CCCTTCCCAGCACAGAGAATA--CGAAAGTGCTTGC  941

seq1  CT  952
      ||
seq2  CT  943