BAC Information

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BAC

Clone NameB6Ng01-053F09
Chromosome2 (Build37)
Map Location 29,001,937 - 29,169,675
singlet/doubletdoublet
Overlap geneSetx, Ntng2
Upstream geneOlfm1, Gm347, 1700007K13Rik, Mrps2, LOC665412, Gbgt1, Ralgds, Cel, Gtf3c5, Gfi1b, Tsc1, 1700026L06Rik, 1190002A17Rik, LOC665643, Gtf3c4, Ddx31, Barhl1, LOC100033452, 1700101E01Rik, LOC100039666, Ttf1
Downstream geneCrsp8, Rapgef1, LOC433415, OTTMUSG00000012686, Trub2, Coq4, Slc27a4, Urm1, LOC100041002, Ceecam1, Odf2, Gle1l, Spna2, LOC665532, Wdr34, Set, Pkn3, Zdhhc12, Zer1, LOC100041114, Tbc1d13, Slc39a1-ps, Endog, D2Wsu81e, Ccbl1, 1700084E18Rik, Lrrc8a, Phyhd1, Dolk, Nup188
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-053F09.bB6Ng01-053F09.g
ACCDH876414DH876415
length634862
definitionDH876414|Mus musculus domesticus DNA, BAC clone: B6Ng01-053F09, 5' end.DH876415|Mus musculus domesticus DNA, BAC clone: B6Ng01-053F09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(29,169,042 - 29,169,675)(29,001,937 - 29,002,796)
sequence
gaattctccacagaatgaacctaagcagtcctgctggtaatgtgacagaa
ggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtccaaggctact
cttgggaaaatgctaattaaacaaagaaaatgggcaggtatatgaaaaac
ttcactgttcatggtaaacaccccagaagttacaccttttgacaactgca
cctgctttctagaaagattccatgttgctgggttccacagaatacatttt
ggagaataccagccaagcatcaggagctcccgagggcttgcgcattacaa
aaccagtttacgatgtgtttcgtgagaacctgaatctttgctattcttca
tcccacagctcctcacccagtcttcaacccaagatgccagcaggatggac
tcgtcctttggtcctgtaccaaccagtgatttctggtattcactcaaagc
atctttatgttttttggatttttaacatgtatctttatttttaattttat
gtctctgggttggtggacattagtgcattgccttcagagaccaagggcat
tggaccacctggagcttgagttacaggcaatggagagcagctgctggatg
tgggtgctgagaacctaactctggtctttgcaag
gaattcatttcagctacaaaaaggtgataaaagatgtttgacagctaacc
aaaacagtgctgccacctgccgtggacaagttattgtgatttcagattct
gacgaagaagaggatgaggatgaagatgaaagaagtagtagtgaggaaaa
catcaaacagagtaaagcatgcatagggaaagactgctcagagcatcgta
gcttggcagttaatgccagtgtggagaagcagcttgtaaaagaggaagaa
aggtaccctgtagaatttgaagactctgaatctcaggtttttgagtttga
aagctcatctgaagtcttttcagtttggcaagatcataaaatagacagca
aaaactcccttcaaggggaacagaagagctatgtaactcatgtagctgat
agtacaaacaataacttgggttgtggtgactctgtgtctgaagaggttgt
tagaaacaaagcagagggagttaaagagcatgcaggaccacatagtagtg
tttctgctgaggaattttgtaaaactggagtaaaaaaacctaagaggaaa
cgctatgacaaagttacagctgaagatcctcagaggccttcctcttctgt
tggaactgatcaattgcctgatcgcagagatcttactgaaagtgatttaa
agagtgcagacatggggatggcaactcccagttcaagtttttgagagaga
ttctacaatttttacagaagtctacaaaatctcgaactcactcaaaacct
gttaggaaagttccagcctctaagcaactaagaaaacacattcagacacc
cagaagaggacagtctaagagttcatgttacataatttgtagaacttctc
ctgctattgtgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_29169042_29169675
seq2: B6Ng01-053F09.b_43_676 (reverse)

seq1  CTTGCAAAGACCAGAGTTAGGTTCCCAGCACCCACATCCAGCAGCTGCTC  50
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  CTTGCAAAGACCAGAGTTAGGTTCTCAGCACCCACATCCAGCAGCTGCTC  50

seq1  ACCATTGCCTGTAACTCAAGCTCCAGGTGGTCCAATGCCCTTGGTCTCTG  100
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTGCCTGTAACTCAAGCTCCAGGTGGTCCAATGCCCTTGGTCTCTG  100

seq1  AAGGCAATGCACTAATGTCCACCAACCCAGAGACATAAAATTAAAAATAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCAATGCACTAATGTCCACCAACCCAGAGACATAAAATTAAAAATAA  150

seq1  AGATACATGTTAAAAATCCAAAAAACATAAAGATGCTTTGAGTGAATACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATACATGTTAAAAATCCAAAAAACATAAAGATGCTTTGAGTGAATACC  200

seq1  AGAAATCACTGGTTGGTACAGGACCAAAGGACGAGTCCATCCTGCTGGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATCACTGGTTGGTACAGGACCAAAGGACGAGTCCATCCTGCTGGCA  250

seq1  TCTTGGGTTGAAGACTGGGTGAGGAGCTGTGGGATGAAGAATAGCAAAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGGGTTGAAGACTGGGTGAGGAGCTGTGGGATGAAGAATAGCAAAGA  300

seq1  TTCAGGTTCTCACGAAACACATCGTAAACTGGTTTTGTAATGCGCAAGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGTTCTCACGAAACACATCGTAAACTGGTTTTGTAATGCGCAAGCC  350

seq1  CTCGGGAGCTCCTGATGCTTGGCTGGTATTCTCCAAAATGTATTCTGTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGGGAGCTCCTGATGCTTGGCTGGTATTCTCCAAAATGTATTCTGTGG  400

seq1  AACCCAGCAACATGGAATCTTTCTAGAAAGCAGGTGCAGTTGTCAAAAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCAGCAACATGGAATCTTTCTAGAAAGCAGGTGCAGTTGTCAAAAGG  450

seq1  TGTAACTTCTGGGGTGTTTACCATGAACAGTGAAGTTTTTCATATACCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAACTTCTGGGGTGTTTACCATGAACAGTGAAGTTTTTCATATACCTG  500

seq1  CCCATTTTCTTTGTTTAATTAGCATTTTCCCAAGAGTAGCCTTGGACACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATTTTCTTTGTTTAATTAGCATTTTCCCAAGAGTAGCCTTGGACACA  550

seq1  CACACACACACACACACACACACACACACACACCTTCTGTCACATTACCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACACACACCTTCTGTCACATTACCA  600

seq1  GCAGGACTGCTTAGGTTCATTCTGTGGAGAATTC  634
      ||||||||||||||||||||||||||||||||||
seq2  GCAGGACTGCTTAGGTTCATTCTGTGGAGAATTC  634

seq1: chr2_29001937_29002796
seq2: B6Ng01-053F09.g_71_932

seq1  GAATTCATTTCAGCTACAAAAAGGTGATAAAAGATGTTTGACAGCTAACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTCAGCTACAAAAAGGTGATAAAAGATGTTTGACAGCTAACC  50

seq1  AAAACAGTGCTGCCACCTGCCGTGGACAAGTTATTGTGATTTCAGATTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAGTGCTGCCACCTGCCGTGGACAAGTTATTGTGATTTCAGATTCT  100

seq1  GACGAAGAAGAGGATGAGGATGAAGATGAAAGAAGTAGTAGTGAGGAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGAAGAAGAGGATGAGGATGAAGATGAAAGAAGTAGTAGTGAGGAAAA  150

seq1  CATCAAACAGAGTAAAGCATGCATAGGGAAAGACTGCTCAGAGCATCGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAAACAGAGTAAAGCATGCATAGGGAAAGACTGCTCAGAGCATCGTA  200

seq1  GCTTGGCAGTTAATGCCAGTGTGGAGAAGCAGCTTGTAAAAGAGGAAGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGGCAGTTAATGCCAGTGTGGAGAAGCAGCTTGTAAAAGAGGAAGAA  250

seq1  AGGTACCCTGTAGAATTTGAAGACTCTGAATCTCAGGTTTTTGAGTTTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTACCCTGTAGAATTTGAAGACTCTGAATCTCAGGTTTTTGAGTTTGA  300

seq1  AAGCTCATCTGAAGTCTTTTCAGTTTGGCAAGATCATAAAATAGACAGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTCATCTGAAGTCTTTTCAGTTTGGCAAGATCATAAAATAGACAGCA  350

seq1  AAAACTCCCTTCAAGGGGAACAGAAGAGCTATGTAACTCATGTAGCTGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTCCCTTCAAGGGGAACAGAAGAGCTATGTAACTCATGTAGCTGAT  400

seq1  AGTACAAACAATAACTTGGGTTGTGGTGACTCTGTGTCTGAAGAGGTTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACAAACAATAACTTGGGTTGTGGTGACTCTGTGTCTGAAGAGGTTGT  450

seq1  TAGAAACAAAGCAGAGGGAGTTAAAGAGCATGCAGGACCACATAGTAGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAACAAAGCAGAGGGAGTTAAAGAGCATGCAGGACCACATAGTAGTG  500

seq1  TTTCTGCTGAGGAATTTTGTAAAACTGGAGTAAAAAAACCTAAGAGGAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGCTGAGGAATTTTGTAAAACTGGAGTAAAAAAACCTAAGAGGAAA  550

seq1  CGCTATGACAAAGTTACAGCTGAAGATCCTCAGAGGCCTTCCTCTTCTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTATGACAAAGTTACAGCTGAAGATCCTCAGAGGCCTTCCTCTTCTGT  600

seq1  TGGAACTGATCAATTGCCTGATCGCAGAGATCTTACTGAAAGTGATTTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAACTGATCAATTGCCTGATCGCAGAGATCTTACTGAAAGTGATTTAA  650

seq1  AGAGTGCAGACATGGGGATGGCAACTCCCAGTTCAAG-TGTTGAGAGAGA  699
      ||||||||||||||||||||||||||||||||||||| | ||||||||||
seq2  AGAGTGCAGACATGGGGATGGCAACTCCCAGTTCAAGTTTTTGAGAGAGA  700

seq1  TTCTACAA-TTTTACAGAAGTCTACAAAATCTCGAACTCACTCAAAACCT  748
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TTCTACAATTTTTACAGAAGTCTACAAAATCTCGAACTCACTCAAAACCT  750

seq1  GTTAGGAAAGTTCCAGCCTCTAAGGCAACTAAGAAAACACATTCAGACA-  797
      ||||||||||||||||||||||| ||||||||||||||||||||||||| 
seq2  GTTAGGAAAGTTCCAGCCTCTAA-GCAACTAAGAAAACACATTCAGACAC  799

seq1  CCAGAAGAGGACAGTCTAAGAGTTCATGTTACATAAGTTGTAGAACTTCT  847
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  CCAGAAGAGGACAGTCTAAGAGTTCATGTTACATAATTTGTAGAACTTCT  849

seq1  CCTGCTATTGTGC  860
      |||||||||||||
seq2  CCTGCTATTGTGC  862