BAC Information

Click to search

BAC

Clone NameB6Ng01-053G10
Chromosome2 (Build37)18 (Build37)
Map Location 142,776,572 - 142,777,00518,109,421 - 18,109,976
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC668913, LOC668914, Kif16b
Downstream geneSnrpb2, Otor, LOC668915, LOC668916, Pcsk2, Bfsp1, LOC100043799, LOC100043534, Dstn, Rrbp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-053G10.bB6Ng01-053G10.g
ACCDH876459DH876460
length763735
definitionDH876459|Mus musculus domesticus DNA, BAC clone: B6Ng01-053G10, 5' end.DH876460|Mus musculus domesticus DNA, BAC clone: B6Ng01-053G10, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(142,776,572 - 142,777,005)(18,109,421 - 18,109,976)
sequence
gaattctttgtttagctctgtaccctattttttaatagggttatttgatt
ttctggagtccatcttcttgggttatttgtatatattggatattagttcc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtgtcct
ttttgtcttattgacagtgtcttttgccttacagaagctttgcaatttta
tgaggtcccatttgtcagttctcgatcttacagcacaagccattgctgtt
ctattcagaaaattttcccctgtacccatgtcttcaaggctttctcccac
tttctcctctatatgtttcagtgtctctggttttatgtggagttccttga
tccacatagatgtgacctttgtacaaggagataagtatggatcaatttgc
attcttctacatgataaccgccagttgtgccagcaccatttgttgaaaat
gctgtcatgctgggcatggtagagcatgcctttaatcctagcacttggga
ggcagaggcaggtggatttctgtgtttgaggccagcctggaaaaaaaaaa
gctgtctttttttcactggatgattttagctcctttgtcaaagatcaagt
gaccataggtgtgtgggttcatttctgggtcttcaattctattccattga
tctacctgtctgttgatgtaccagtaccagtttttatcacaattgctctg
tagtaaagctttaggtcaggcatggtgatttcaccagaggttcttttatc
cttgagaagactt
gaattcctgatctttccaaggcttttatcatgaatgggtgttggattttt
tcaaatgctttctcagcatctaacgagatgatcatgtggtttttgtcctt
gagtttgtttatatactggattacgttgatggatttccgtatattgaacc
atccctgcatccctgggatgaaacctacttggtcaggatggatgtttgtt
ttgatgtggtcttggtttcggttagcaagaactttattcaggttttttgc
atcaatattcataagggatattggtctgaagttctctatctttgttggtt
ctttttgtggtttaggtatcagagtaattgtggcttcatagaatgagttg
ggtagagtaccttttgtttttattttgtggaatagattgtgaagaactgg
gattatatcttctttgaaggtctgatagaactctgcactaaactcatctg
gtcctgggcttttttggttaggagactattaatgactgcttctatttctt
tgggggatatcgggccgtttagatcattaacctgatcttgattcaacttt
ggtagctggtatctgtctagaaacttctccatttcatccaggttctccag
tttttgttgagtatagtcttttgtagaaggatctgatggtgttttggatt
tcttcgggatctgttgttgtgtctcctgcttcatttctgattttgttaat
tagaatgctatccctgtgccctctagtgagtctgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_142776572_142777005
seq2: B6Ng01-053G10.b_275_804 (reverse)

seq1  AAGTCTTCTCAAGGATAAAAGAACCTCTGGTGGAATCACCATGCCTGACC  50
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  AAGTCTTCTCAAGGATAAAAGAACCTCTGGTGAAATCACCATGCCTGACC  50

seq1  TAAAGCTTTACTACAGAGCAATTGTGATAAAAACTGCATGGTACTGGTAT  100
      ||||||||||||||||||||||||||||||||||    ||||||||||| 
seq2  TAAAGCTTTACTACAGAGCAATTGTGATAAAAAC----TGGTACTGGTAC  96

seq1  AGAGACAGACAAGTAGACCAATGGAATAGAATTGAAGACCCAGAAATGAA  150
      |   ||||||| ||||| ||||||||||||||||||||||||||||||||
seq2  ATCAACAGACAGGTAGATCAATGGAATAGAATTGAAGACCCAGAAATGAA  146

seq1  CCCACACACCTATGGTCACTTGATCTTCGACAAGGGAGCTAAAACCATCC  200
      ||||||||||||||||||||||||||| ||||| |||||||||| |||||
seq2  CCCACACACCTATGGTCACTTGATCTTTGACAAAGGAGCTAAAATCATCC  196

seq1  AGAGGAAGAAA---------------------------------------  211
      || | || |||                                       
seq2  AGTGAAAAAAAGACAGCTTTTTTTTTTCCAGGCTGGCCTCAAACACAGAA  246

seq1  --------------------------------------------------  211
                                                        
seq2  ATCCACCTGCCTCTGCCTCCCAAGTGCTAGGATTAAAGGCATGCTCTACC  296

seq1  -----------GACAGCATTTTCAACAATTGGTGCTGGCACAACTGGTTG  250
                 ||||||||||||||||| ||||||||||||||||||  |
seq2  ATGCCCAGCATGACAGCATTTTCAACAAATGGTGCTGGCACAACTGGCGG  346

seq1  TTATCATGTAGAAGAATGGGAATCGATCCATACTTATCTCCTTGTACTAA  300
      ||||||||||||||||||  ||| ||||||||||||||||||||||| ||
seq2  TTATCATGTAGAAGAATGCAAATTGATCCATACTTATCTCCTTGTACAAA  396

seq1  GGTCAAATCTAAGTGGATCAAGGAACTTCACATAAAACCAGAGACACTGA  350
      ||||| ||||| ||||||||||||||| ||||||||||||||||||||||
seq2  GGTCACATCTATGTGGATCAAGGAACTCCACATAAAACCAGAGACACTGA  446

seq1  AACTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATATGGGCACAGGG  400
      ||| ||||||||||||||||||  ||||||||||||| ||||| ||||||
seq2  AACATATAGAGGAGAAAGTGGGAGAAAGCCTTGAAGACATGGGTACAGGG  496

seq1  GACAAATTCCTGAACAGAACAGCAATGGCTTGTG  434
      || || || ||||| |||||||||||||||||||
seq2  GAAAATTTTCTGAATAGAACAGCAATGGCTTGTG  530

seq1: chr18_18109421_18109976
seq2: B6Ng01-053G10.g_249_804 (reverse)

seq1  CCAGACTCACTAGAGGGCACAGGGAAAGCATTCTAATTAACAAAATCAGA  50
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  CCAGACTCACTAGAGGGCACAGGGATAGCATTCTAATTAACAAAATCAGA  50

seq1  AATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCAT  100
      ||||||   ||||||| |||||||||||| ||||||||||||||||||||
seq2  AATGAAGCAGGAGACACAACAACAGATCCCGAAGAAATCCAAAACACCAT  100

seq1  CAGATCCTTCTACAAAAGGCTATACTCAAC-AAAACTGGAGAACCTGGAT  149
      |||||||||||||||||| ||||||||||| |||||||||||||||||||
seq2  CAGATCCTTCTACAAAAGACTATACTCAACAAAAACTGGAGAACCTGGAT  150

seq1  GAAATGGAGAAGTTTCTAGACAGATACCAGGTACCAAAGTTGAATCAAGA  199
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  GAAATGGAGAAGTTTCTAGACAGATACCAGCTACCAAAGTTGAATCAAGA  200

seq1  TCAGGTTAATGATCTAAACAGCCCGATATCCCCCAAAGAAATAGAAGCAG  249
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TCAGGTTAATGATCTAAACGGCCCGATATCCCCCAAAGAAATAGAAGCAG  250

seq1  TCATTAATAGTCTCCCAACCAAAAAAAGCCCAGGACCAGATGGGTTTAGT  299
      ||||||||||||||| |||| ||||||||||||||||||||| |||||||
seq2  TCATTAATAGTCTCCTAACC-AAAAAAGCCCAGGACCAGATGAGTTTAGT  299

seq1  GCAGAGTTCTATCAGACCTCCAAAGAAGATCTAATCCCAGTTCTTCACAA  349
      ||||||||||||||||||| |||||||||| |||||||||||||||||||
seq2  GCAGAGTTCTATCAGACCTTCAAAGAAGATATAATCCCAGTTCTTCACAA  349

seq1  ACTATTCCACAAAATAGAAACAGAAGGTACTCTACCCAACTCATTCTATG  399
       ||||||||||||||| ||||| |||||||||||||||||||||||||||
seq2  TCTATTCCACAAAATAAAAACAAAAGGTACTCTACCCAACTCATTCTATG  399

seq1  AAGCCACAATTACTCTGATACCTAAACCACAAAAAGACCCCACAAAGATA  449
      ||||||||||||||||||||||||||||||||||||| || |||||||||
seq2  AAGCCACAATTACTCTGATACCTAAACCACAAAAAGAACCAACAAAGATA  449

seq1  GAGAACTTCAGACCAATATCCCTTCTGAATATTGGTGCAAAAATCCTCAA  499
      |||||||||||||||||||||||| ||||||||| |||||||| ||| ||
seq2  GAGAACTTCAGACCAATATCCCTTATGAATATTGATGCAAAAAACCTGAA  499

seq1  TAAAGTTCTTGCTAACCGAATCCAAGAACACATCAAAACAATCTTCCATC  549
      |||||||||||||||||||| |||||| ||||||||||||| | ||||||
seq2  TAAAGTTCTTGCTAACCGAAACCAAGACCACATCAAAACAAACATCCATC  549

seq1  CTGACCA  556
      |||||||
seq2  CTGACCA  556