BAC Information

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BAC

Clone NameB6Ng01-053H04
Chromosome2 (Build37)
Map Location 100,878,377 - 100,986,692
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC668702, LOC100042907, LOC241572, LOC668705
Downstream geneB230118H07Rik, Rag2, Rag1, LOC100042930, Traf6, 2600010E01Rik, LOC100043302, Commd9, Ldlrad3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-053H04.bB6Ng01-053H04.g
ACCDH876491DH876492
length1,2221,136
definitionDH876491|Mus musculus domesticus DNA, BAC clone: B6Ng01-053H04, 5' end.DH876492|Mus musculus domesticus DNA, BAC clone: B6Ng01-053H04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(100,878,377 - 100,879,624)(100,985,537 - 100,986,692)
sequence
gaattcctgttccatcatctccagagacatagagagtagattaaaatacc
cactcacagtaaatcctctgaggaacattataacatggtatctaaatggg
atatgtgtttgtataataaattctatgttagaatctatctttagtgagaa
tcaaaatgcatatatattcctatgaaaacccaagtgtgctgctcttatca
ctgccttattgccttgagacaggctgtctccctgaaaaagaaacatgtcc
tttgggttgggctacactagttgaccaccaagctctcaatagttgacacc
aaatgctaggattataggcataagcagcaatgcctagctttcacatggtc
tcaggggactcaaactcagggcctcatgtttgctgagcaagtgttcttgt
gcactgaaccatctccctagatccagaagaaatgtttaagtgtacaattg
cagcacactactgttaagttttagtaccagctttgctcaagagttcttca
cagtggtttcattagtatataaagccacttttcttttcataaaatttatg
ttgatcctaaagacagcctcttatgttgggaacagatacaaaggcatttt
aaaaccacttacgtgttgaaagagccctaaacacttcaagcaaagttgct
cttgatatttaagttttctgtgtggttttaggggaacgtcttagcagttc
tgagtggtgttattcttgtatttcttggtggaagttctagaatactgggt
atagactcttattctcattttaagcacaacttcctataatgcttcatttg
tcaaagaaatctacattggtgtgatggctgagtcatgaagagctaaatcc
actttggccagtaaagatctgttcccagtgtttgaaaatactcaggttac
attcagaagcttaaaatcaaaggcacagttcaattttaatatcatttaaa
aatgagcctttagagaaagagcagagggagagggaggagagagacaaaga
cggacggagagactgacgacgacgacggagacaagacccagaatgatgaa
actgaaggacccgaaacgacgatacagactgttgaaatctagaaacctga
aaacgaattcctaagcgaacaagagtcagcagcccaccagatcaggttgc
tcagtatgcaagaccagttcctggaatggataaaatgggccatctctttt
cttaggtgtaaactctgaaatt
gaattctccttcgcctaggacgtgtcactccctgattggctgcagcccat
cggccgagttgacgtcacggggaaggcagagcacatggagtgaagaacca
ccctcggcacatgcgcagattatttgtttaccacttagaacacagctgtc
agcgccatcttgtaacagcgaatgtgggcgcggctcccaacatacttcca
tggataagagaggcacactaacaccatgcttttatgtcccatgtcacaga
aagtcaaaaagtcttttctttttctacatttatgataaactgaaatggag
aaggaaagaaagtcaatgaagtcttactttttatactatttcctcaaagt
tatttatcttagaatagtctacatgtcacagtgtcatactctgcattaat
ttatcttagacctcaaagatataactataattctttcatttctgatttga
gaaattgggctcttcattagtgttgttggtagtttataattttcattaat
ttttatgtaaaatcatcgcgataacattgatctttaccatagaactcacc
ttgatcatccaagtttgcctgccttttgagtcatgtaggagacatgggtt
taggttcattttctgagtgagtttcaagagaagtgaagggaagagtcacc
gtgaatatgagtgatatctttagataaaagctgggatcctgagtaagtta
agagaggagaaagagaagtccagttgaatactagtgtttcttcttctgtt
tcctgatctgtggagatgtgatatctttccaaccacatatgaactctgca
atgctccttttcttgtgaaattgcttattttcacacctttctgactaatt
ctttttgtggatgtcagaaaacactgaacaataaccatgtcacagcctca
tgttgaattgccttgagaggtcctctgtgtaactatatcctgttacttct
gaattcagccttacttgattgtagggatggtcagattcagctagagttct
tgcagaatataatatgaaaggtctactaaaccagatacaccttactagag
actaagagagctagagagagagtggggaagacctgacacattggcacatg
gaaatttctgaacagaaccaatggccccgactctaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_100878377_100879624
seq2: B6Ng01-053H04.b_42_1263

seq1  GAATTCCTGTTCCATCATCTCCAGAGACATAGAGAGTAGATTAAAATACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGTTCCATCATCTCCAGAGACATAGAGAGTAGATTAAAATACC  50

seq1  CACTCACAGTAAATCCTCTGAGGAACATTATAACATGGTATCTAAATGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCACAGTAAATCCTCTGAGGAACATTATAACATGGTATCTAAATGGG  100

seq1  ATATGTGTTTGTATAATAAATTCTATGTTAGAATCTATCTTTAGTGAGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTGTTTGTATAATAAATTCTATGTTAGAATCTATCTTTAGTGAGAA  150

seq1  TCAAAATGCATATATATTCCTATGAAAACCCAAGTGTGCTGCTCTTATCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAATGCATATATATTCCTATGAAAACCCAAGTGTGCTGCTCTTATCA  200

seq1  CTGCCTTATTGCCTTGAGACAGGCTGTCTCCCTGAAAAAGAAACATGTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTTATTGCCTTGAGACAGGCTGTCTCCCTGAAAAAGAAACATGTCC  250

seq1  TTTGGGTTGGGCTACACTAGTTGACCACCAAGCTCTCAATAGTTGACACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGGTTGGGCTACACTAGTTGACCACCAAGCTCTCAATAGTTGACACC  300

seq1  AAATGCTAGGATTATAGGCATAAGCAGCAATGCCTAGCTTTCACATGGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCTAGGATTATAGGCATAAGCAGCAATGCCTAGCTTTCACATGGTC  350

seq1  TCAGGGGACTCAAACTCAGGGCCTCATGTTTGCTGAGCAAGTGTTCTTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGGGACTCAAACTCAGGGCCTCATGTTTGCTGAGCAAGTGTTCTTGT  400

seq1  GCACTGAACCATCTCCCTAGATCCAGAAGAAATGTTTAAGTGTACAATTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTGAACCATCTCCCTAGATCCAGAAGAAATGTTTAAGTGTACAATTG  450

seq1  CAGCACACTACTGTTAAGTTTTAGTACCAGCTTTGCTCAAGAGTTCTTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCACACTACTGTTAAGTTTTAGTACCAGCTTTGCTCAAGAGTTCTTCA  500

seq1  CAGTGGTTTCATTAGTATATAAAGCCACTTTTCTTTTCATAAAATTTATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGTTTCATTAGTATATAAAGCCACTTTTCTTTTCATAAAATTTATG  550

seq1  TTGATCCTAAAGACAGCCTCTTATGTTGGGAACAGATACAAAGGCATTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATCCTAAAGACAGCCTCTTATGTTGGGAACAGATACAAAGGCATTTT  600

seq1  AAAACCACTTACGTGTTGAAAGAGCCCTAAACACTTCAAGCAAAGTTGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCACTTACGTGTTGAAAGAGCCCTAAACACTTCAAGCAAAGTTGCT  650

seq1  CTTGATATTTAAGTTTTCTGTGTGGTTTTAGGGGAACGTCTTAGCAGTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGATATTTAAGTTTTCTGTGTGGTTTTAGGGGAACGTCTTAGCAGTTC  700

seq1  TGAGTGGTGTTATTCTTGTATTTCTTGGTGGAAGTTCTAGAATACTGGGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTGGTGTTATTCTTGTATTTCTTGGTGGAAGTTCTAGAATACTGGGT  750

seq1  ATAGACTCTTATTCTCATTTTAAGCACAACTTCCTATAATGCTTCATTTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGACTCTTATTCTCATTTTAAGCACAACTTCCTATAATGCTTCATTTG  800

seq1  TCAAAGAAATCTACATTGGTGTGATGGCTGAGTCATGAAGAGCTAAATCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGAAATCTACATTGGTGTGATGGCTGAGTCATGAAGAGCTAAATCC  850

seq1  AC-TTGGCCAGTAAAGATCTGTTCCCAGTGTTTGAAAATACTCAGGTTAC  899
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGGCCAGTAAAGATCTGTTCCCAGTGTTTGAAAATACTCAGGTTAC  900

seq1  ATTCAGAAGCTTAAAATCAAAGGCACAGTTCAATTTTAATATCATTTAAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGAAGCTTAAAATCAAAGGCACAGTTCAATTTTAATATCATTTAAA  950

seq1  AATGAGCCCTTAGAGAAAGGAGCAGAGGGAGAGGGAGGAGAGAGAACAAA  999
      |||||||| ||||||||| ||||||||||||||||||||||||||   ||
seq2  AATGAGCCTTTAGAGAAA-GAGCAGAGGGAGAGGGAGGAGAGAGA--CAA  997

seq1  AGACAGACAGAGAGACAGACAGACAGACAGACAGAGACAAAGACACAAAG  1049
      |||| ||| ||||||| ||| ||| ||| ||| ||||| ||||| |  ||
seq2  AGACGGACGGAGAGACTGAC-GAC-GAC-GACGGAGAC-AAGACCC--AG  1041

seq1  AAATAGATAGAAACAGAGAGACACAGAAACAGACAGAAAAACAAGACAGG  1099
      ||   ||| ||||| ||  ||| | ||||| ||| || |    |||| | 
seq2  AA--TGAT-GAAACTGAAGGAC-CCGAAAC-GAC-GATA---CAGACTG-  1081

seq1  TATGAGAATCTAGAAACACAGAAGACG-ATTACTTAGCAGAACAAGAAGT  1148
        ||| ||||||||||| | ||| ||| ||| || ||| ||||||| |||
seq2  -TTGA-AATCTAGAAAC-CTGAAAACGAATTCCTAAGC-GAACAAG-AGT  1126

seq1  CAGCAGCCACACAG-TCAGGTTGCTCAGTAGGCAGCCCCATGTCTGTGAA  1197
      ||||||||   ||| ||||||||||||||| |||   |||  ||   |||
seq2  CAGCAGCCCACCAGATCAGGTTGCTCAGTATGCAAGACCAGTTCCTGGAA  1176

seq1  TGGATTAAATAATGCGCCATCATCTTTTCTTAGGTTGTAAAATCTGAAAT  1247
      |||||   | |||| |||||| |||||||||||| |||||| ||||||||
seq2  TGGAT---AAAATGGGCCATC-TCTTTTCTTAGG-TGTAAACTCTGAAAT  1221

seq1  T  1248
      |
seq2  T  1222

seq1: chr2_100985537_100986692
seq2: B6Ng01-053H04.g_67_1202 (reverse)

seq1  TTAGAGTCTGGGCCATTGGTGTTCTGTTCAGGAAATTTTCCCCTGTGCCA  50
      |||||||| |||||||||  |||||||||| |||||||  || |||||||
seq2  TTAGAGTCGGGGCCATTG--GTTCTGTTCA-GAAATTT--CCATGTGCCA  45

seq1  ATGTGTTCAAGGCTCTTTCCCACTTCCTCTTCTCTTAGCTTCTCTTAGTT  100
      ||||| |||  | |||| ||||||  ||| |||| |||| |||||||| |
seq2  ATGTG-TCA--GGTCTTCCCCACT--CTC-TCTC-TAGC-TCTCTTAG-T  86

seq1  CTCTTAGTTTAGTGTATCTGGTTTTATGTAGACCTTTCATATTATATTCT  150
      ||| ||||   |||||||||||||   |||||||||||||||||||||||
seq2  CTC-TAGTAAGGTGTATCTGGTTT--AGTAGACCTTTCATATTATATTCT  133

seq1  GGCAAGAACTCTAGCTGAATCTGACCATCGCCTACAATCAAGTAAGGCTG  200
       |||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  -GCAAGAACTCTAGCTGAATCTGACCATC-CCTACAATCAAGTAAGGCTG  181

seq1  AATTCAGAAGTAACAGGATATAGTTACACAGAGGACCTCTCAAGGCAATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCAGAAGTAACAGGATATAGTTACACAGAGGACCTCTCAAGGCAATT  231

seq1  CAACATTGAGGCTGTGACATGGTTATTGTTCAGTGTTTTCTGACATCCAC  300
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACA-TGAGGCTGTGACATGGTTATTGTTCAGTGTTTTCTGACATCCAC  280

seq1  AAAAAGAATTAAGTCAGAAAGGTGTGAAAATAAGCAATTTCACAAGAAAA  350
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGAATT-AGTCAGAAAGGTGTGAAAATAAGCAATTTCACAAGAAAA  329

seq1  GGAGCATTGCAGAGTTCATATGTGGTTGG-AAGATATCACATCTCCACAG  399
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GGAGCATTGCAGAGTTCATATGTGGTTGGAAAGATATCACATCTCCACAG  379

seq1  ATCAGGAAACAGAAGAAGAAACACTAGTATTCAACTGGACTTCTCTTTCT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGGAAACAGAAGAAGAAACACTAGTATTCAACTGGACTTCTCTTTCT  429

seq1  CCTCTCTTAACTTACTCAGGATCCCAGCTTTTATCTAAAGATATCACTCA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCTTAACTTACTCAGGATCCCAGCTTTTATCTAAAGATATCACTCA  479

seq1  TATTCACGGTGACTCTTCCCTTCACTTCTCTTGAAACTCACTCAGAAAAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCACGGTGACTCTTCCCTTCACTTCTCTTGAAACTCACTCAGAAAAT  529

seq1  GAACCTAAACCCATGTCTCCTACATGACTCAAAAGGCAGGCAAACTTGGA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCTAAACCCATGTCTCCTACATGACTCAAAAGGCAGGCAAACTTGGA  579

seq1  TGATCAAGGTGAGTTCTATGGTAAAGATCAATGTTATCGCGATGATTTTA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCAAGGTGAGTTCTATGGTAAAGATCAATGTTATCGCGATGATTTTA  629

seq1  CATAAAAATTAATGAAAATTATAAACTACCAACAACACTAATGAAGAGCC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAAAATTAATGAAAATTATAAACTACCAACAACACTAATGAAGAGCC  679

seq1  CAATTTCTCAAATCAGAAATGAAAGAATTATAGTTATATCTTTGAGGTCT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTCTCAAATCAGAAATGAAAGAATTATAGTTATATCTTTGAGGTCT  729

seq1  AAGATAAATTAATGCAGAGTATGACACTGTGACATGTAGACTATTCTAAG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATAAATTAATGCAGAGTATGACACTGTGACATGTAGACTATTCTAAG  779

seq1  ATAAATAACTTTGAGGAAATAGTATAAAAAGTAAGACTTCATTGACTTTC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATAACTTTGAGGAAATAGTATAAAAAGTAAGACTTCATTGACTTTC  829

seq1  TTTCCTTCTCCATTTCAGTTTATCATAAATGTAGAAAAAGAAAAGACTTT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTTCTCCATTTCAGTTTATCATAAATGTAGAAAAAGAAAAGACTTT  879

seq1  TTGACTTTCTGTGACATGGGACATAAAAGCATGGTGTTAGTGTGCCTCTC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACTTTCTGTGACATGGGACATAAAAGCATGGTGTTAGTGTGCCTCTC  929

seq1  TTATCCATGGAAGTATGTTGGGAGCCGCGCCCACATTCGCTGTTACAAGA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCCATGGAAGTATGTTGGGAGCCGCGCCCACATTCGCTGTTACAAGA  979

seq1  TGGCGCTGACAGCTGTGTTCTAAGTGGTAAACAAATAATCTGCGCATGTG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCGCTGACAGCTGTGTTCTAAGTGGTAAACAAATAATCTGCGCATGTG  1029

seq1  CCGAGGGTGGTTCTTCACTCCATGTGCTCTGCCTTCCCCGTGACGTCAAC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGAGGGTGGTTCTTCACTCCATGTGCTCTGCCTTCCCCGTGACGTCAAC  1079

seq1  TCGGCCGATGGGCTGCAGCCAATCAGGGAGTGACACGTCCTAGGCGAAGG  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGCCGATGGGCTGCAGCCAATCAGGGAGTGACACGTCCTAGGCGAAGG  1129

seq1  AGAATTC  1156
      |||||||
seq2  AGAATTC  1136