BAC Information

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BAC

Clone NameB6Ng01-053I05
Chromosome2 (Build37)
Map Location 50,958,005 - 51,025,037
singlet/doubletdoublet
Overlap geneRnd3
Upstream geneLypd6, 2010311D03Rik, LOC666781, LOC227885
Downstream geneLOC666802, LOC666810, LOC100041614, Tas2r134, LOC433426, Ppia-ps2_635.1, Rbm43, LOC100041634, Nmi, Tnfaip6, Rif1, Neb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-053I05.bB6Ng01-053I05.g
ACCDH876541DH876542
length1,026529
definitionDH876541|Mus musculus domesticus DNA, BAC clone: B6Ng01-053I05, 5' end.DH876542|Mus musculus domesticus DNA, BAC clone: B6Ng01-053I05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(51,024,018 - 51,025,037)(50,958,005 - 50,958,539)
sequence
gaattccattaactggactaagcacttgcttgtttgattattttattatt
tttcacatattttcttccctttacacataatgttttgacttgattttcta
aaaatgttaaatttcctcctcttacaacccttttattattttttaactat
gtcttcaaattttcaggagctctttcttcatttttgtccgtcccagaatg
tgtcttttgtggatttaagatcatttctactctatgaatgcctctgcaga
ttttttgctttattctcacttgctgcttaaattgacttatatttctctgg
gcttttatgttctatttacttctttctttttgcactgtaagtttgccaca
actgccttttgattttatttgttttattatacttatgggaaaggtaatat
aaaattcatgctagctttagtacaggaaaggaattttctaccaataacct
ttctgccgaaaactggcagggaatgggcaatcctgctttggtacctctaa
gaggcagaatccagtggctttctatgtagaatgacaactcccataccctc
tgccctaacttcccctgagcagtggcttcagtttctcaaggaggactcct
ctaacttctgtggtcatggtggtcatggttgagtgataagcagaaacttg
gtcctggccatcttgtggagatcaatcgaaatgtggtccatatatttttt
actgccatcattgcacccattgtctttctctccatcactgcctggtacct
cttcatcttaattcttctttgggattcttcaggaacaataagttccaacc
aggaatattaatgaacttttcaccagtgttttatacttgatcaactttta
tgtctatgaaacagtctaactgtatgtccatgcatgtcttccaagagcat
gtttagatcacttgtgtttttgaagcctaaccctctttatttttggcatt
tcatgtgaaatggaatagcaagttaggaaaagtaagatgcttggcattct
accatctaggattaatagtcacaagt
tttttttaacctttctttgaagagaagtcatatgtaaattgtagttttat
acatatgtatgtttatttttgttagtatgtgatgtagacatattcattga
gggagacaacattattattagaaatacaggctttttataagcactcaact
ccactatgcaaatgtaacggctgttaaccaatagtcatggcagccatgag
ttttagtttctacacatttttcgtaacagtgataggcagtgttgattgtc
aacagaatctagaatgacccgagagatggacctgcaggtatgtctatggg
gattatcttgattgtattaatgtaagttggggagatctgccctttatgtg
tgacatcattccctggctgggatccctggctgtgtaactgaagaaaggca
gctgagcacgcgctcatctctgtttcctgattggattgtggatgtaaacc
gaaagcccctatttgttggaggggttggagagagaaaagagaatggggaa
aatgatgtggtcatattttaattagattt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_51024018_51025037
seq2: B6Ng01-053I05.b_44_1069 (reverse)

seq1  ACTTGTGACTTTTAATTCTAGATGGT-GGATGGCATGCATCTTTCTTTTC  49
      |||||||||| ||||| ||||||||| | ||| || ||||||| ||||||
seq2  ACTTGTGACTATTAATCCTAGATGGTAGAATGCCAAGCATCTTACTTTTC  50

seq1  CT-ACTTGACTATTCCATTTCACATGAAATGCCAAAAATAAAGAGGGTTA  98
      || ||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CTAACTTG-CTATTCCATTTCACATGAAATGCCAAAAATAAAGAGGGTTA  99

seq1  GGCTTC-AAAACACAAGTGATCTAAACATGCTCTTGGAAGACATGCATGG  147
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTCAAAAACACAAGTGATCTAAACATGCTCTTGGAAGACATGCATGG  149

seq1  ACATACAG-TAGACTGTTTCATAGAACAT-AAAGTTGATC-AGTATAAAA  194
      |||||||| ||||||||||||||| |||| |||||||||| |||||||||
seq2  ACATACAGTTAGACTGTTTCATAG-ACATAAAAGTTGATCAAGTATAAAA  198

seq1  CACTGGTG-TAAGTTCATTAATATTCCTGGTTGGAACTTATTGTTCCTGA  243
      ||||||||  ||||||||||||||||||||||||||||||||||||||||
seq2  CACTGGTGAAAAGTTCATTAATATTCCTGGTTGGAACTTATTGTTCCTGA  248

seq1  AGAATCCCAAAGAAG-ATTAAGATGAAGAGGTACCAGGCAGTGATGGAGA  292
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  AGAATCCCAAAGAAGAATTAAGATGAAGAGGTACCAGGCAGTGATGGAGA  298

seq1  GAAAGACAATGGGTGCAATGATGGCAGTAAAAAATATATGGACCACATTT  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGACAATGGGTGCAATGATGGCAGTAAAAAATATATGGACCACATTT  348

seq1  CGATTGATCTCCACAAGATGGCCAGGACCAAGTTTCTGCTTATCACTCAA  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATTGATCTCCACAAGATGGCCAGGACCAAGTTTCTGCTTATCACTCAA  398

seq1  CCATGACCACCATGACCACAGAAGTTAGAGGAGTCCTCCTTGAGAAACTG  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGACCACCATGACCACAGAAGTTAGAGGAGTCCTCCTTGAGAAACTG  448

seq1  AAGCCACTGCTCAGGGGAAGTTAGGGCAGAGGGTATGGGAGTTGTCATTC  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCACTGCTCAGGGGAAGTTAGGGCAGAGGGTATGGGAGTTGTCATTC  498

seq1  TACATAGAAAGCCACTGGATTCTGCCTCTTAGAGGTACCAAAGCAGGATT  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATAGAAAGCCACTGGATTCTGCCTCTTAGAGGTACCAAAGCAGGATT  548

seq1  GCCCATTCCCTGCCAGTTTTCGGCAGAAAGGTTATTGGTAGAAAATTCCT  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCATTCCCTGCCAGTTTTCGGCAGAAAGGTTATTGGTAGAAAATTCCT  598

seq1  TTCCTGTACTAAAGCTAGCATGAATTTTATATTACCTTTCCCATAAGTAT  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGTACTAAAGCTAGCATGAATTTTATATTACCTTTCCCATAAGTAT  648

seq1  AATAAAACAAATAAAATCAAAAGGCAGTTGTGGCAAACTTACAGTGCAAA  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAACAAATAAAATCAAAAGGCAGTTGTGGCAAACTTACAGTGCAAA  698

seq1  AAGAAAGAAGTAAATAGAACATAAAAGCCCAGAGAAATATAAGTCAATTT  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAGAAGTAAATAGAACATAAAAGCCCAGAGAAATATAAGTCAATTT  748

seq1  AAGCAGCAAGTGAGAATAAAGCAAAAAATCTGCAGAGGCATTCATAGAGT  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGCAAGTGAGAATAAAGCAAAAAATCTGCAGAGGCATTCATAGAGT  798

seq1  AGAAATGATCTTAAATCCACAAAAGACACATTCTGGGACGGACAAAAATG  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATGATCTTAAATCCACAAAAGACACATTCTGGGACGGACAAAAATG  848

seq1  AAGAAAGAGCTCCTGAAAATTTGAAGACATAGTTAAAAAATAATAAAAGG  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAGAGCTCCTGAAAATTTGAAGACATAGTTAAAAAATAATAAAAGG  898

seq1  GTTGTAAGAGGAGGAAATTTAACATTTTTAGAAAATCAAGTCAAAACATT  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTAAGAGGAGGAAATTTAACATTTTTAGAAAATCAAGTCAAAACATT  948

seq1  ATGTGTAAAGGGAAGAAAATATGTGAAAAATAATAAAATAATCAAACAAG  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTAAAGGGAAGAAAATATGTGAAAAATAATAAAATAATCAAACAAG  998

seq1  CAAGTGCTTAGTCCAGTTAATGGAATTC  1020
      ||||||||||||||||||||||||||||
seq2  CAAGTGCTTAGTCCAGTTAATGGAATTC  1026

seq1: chr2_50958005_50958539
seq2: B6Ng01-053I05.g_69_603

seq1  GAATTCTTTTTTTAACCTTTCTTTGAAGAGAAGTCATATGTAAATTGTAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTTTTAACCTTTCTTTGAAGAGAAGTCATATGTAAATTGTAG  50

seq1  TTTTATACATATGTATGTTTATTTTTGTTAGTATGTGATGTAGACATATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATACATATGTATGTTTATTTTTGTTAGTATGTGATGTAGACATATT  100

seq1  CATTGAGGGAGACAACATTATTATTAGAAATACAGGCTTTTTATAAGCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGAGGGAGACAACATTATTATTAGAAATACAGGCTTTTTATAAGCAC  150

seq1  TCAACTCCACTATGCAAATGTAACGGCTGTTAACCAATAGTCATGGCAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACTCCACTATGCAAATGTAACGGCTGTTAACCAATAGTCATGGCAGC  200

seq1  CATGAGTTTTAGTTTCTACACATTTTTCGTAACAGTGATAGGCAGTGTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAGTTTTAGTTTCTACACATTTTTCGTAACAGTGATAGGCAGTGTTG  250

seq1  ATTGTCAACAGAATCTAGAATGACCCGAGAGATGGACCTGCAGGTATGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTCAACAGAATCTAGAATGACCCGAGAGATGGACCTGCAGGTATGTC  300

seq1  TATGGGGATTATCTTGATTGTATTAATGTAAGTTGGGGAGATCTGCCCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGGGATTATCTTGATTGTATTAATGTAAGTTGGGGAGATCTGCCCTT  350

seq1  TATGTGTGACATCATTCCCTGGCTGGGATCCCTGGCTGTGTAACTGAAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGTGACATCATTCCCTGGCTGGGATCCCTGGCTGTGTAACTGAAGA  400

seq1  AAGGCAGCTGAGCACGCGCTCATCTCTGTTTCCTGATTGGATTGTGGATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCAGCTGAGCACGCGCTCATCTCTGTTTCCTGATTGGATTGTGGATG  450

seq1  TAAACCGAAAGCCCCTATTTGTTGGAGGGGTTGGAGAGAGAAAAGAGAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACCGAAAGCCCCTATTTGTTGGAGGGGTTGGAGAGAGAAAAGAGAAT  500

seq1  GGGGAAAATGATGTGGTCATATTTTAATTAGATTT  535
      |||||||||||||||||||||||||||||||||||
seq2  GGGGAAAATGATGTGGTCATATTTTAATTAGATTT  535