BAC Information

Click to search

BAC

Clone NameB6Ng01-053L02
Chromosome2 (Build37)
Map Location 52,896,297 - 53,025,190
singlet/doubletdoublet
Overlap geneFmnl2, Prpf40a
Upstream geneTnfaip6, Rif1, Neb, LOC100041670, Arl5a, Cacnb4, OTTMUSG00000012638, Stam2
Downstream geneArl6ip6, LOC666872, LOC666876, LOC207933, Rprm
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-053L02.bB6Ng01-053L02.g
ACCDH876668DH876669
length1,045778
definitionDH876668|Mus musculus domesticus DNA, BAC clone: B6Ng01-053L02, 5' end.DH876669|Mus musculus domesticus DNA, BAC clone: B6Ng01-053L02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(52,896,297 - 52,897,352)(53,024,414 - 53,025,190)
sequence
gaattccctgtgtgtcagtggtgattcctgagagaagaaaagcacacttc
tcttggttagctgttttcaggggtctttcttcgatttcctttgtgtgcat
gcttgtctctctcttcctttccactctgccctccttctaacatttctctt
ttcatttttccactctaactcttcattacctatatacacacctcctcccc
caaaaaatgtcattcaaaaagcagttcctatttcctctggaagtttcctg
agcctttttttttttttttttgagacagggtttctctgtgcagtcctggc
tgtcctggagctcactctgtagaccagactggcctcgaactcagaaatcc
gcttgcctctgcctctcaagtgctgggattaaaggcgtgtgccaccactg
cctggcctgagcctttgctttatggtttatttgcagacaagagggattta
aacaatagaaatgattgaactttgctattctggggctagagagatggctc
agtgatttagagtgtttgttgctcttctagaggacctgggttcagttccc
agttcccagcacaaacacagtagctcacactcaactgtaactccagttct
agggctttcaccaccctcttcttaccttggtacatgaggcttgcagttgt
gtacctaccttcaagcaggcaaaacatgcaaataaataaataaaataaag
aaaagaaaatagagattccccactttggttccttgccatacaattcttgt
atgtcctgtgatcttctatgaatgcactttggtaatatttttccccctca
gaaatttgataatcattttctaaaaggtctgtattcaataacacaaatct
ccccccacctgcccaggcccttccccaacccccagccctgaccctcaggt
gaaaaagcatagctgctaattcttgtgatttctctgatttgttcttgctc
ggggcagagagcagctttaatttacagtagggagtgcttggacgggaaca
cctggaagaacacctacatataaatcccacgttttaggcatgaaa
gaattcagcagtgactctgtctgattacagcttcagtctcattgcttata
attggttggtctataaatacagccttcatgtataacagcaatttattctc
aaataaatggggaggaatcccattaaaaataactctaaagaaataatagg
atatagtaaaaatttcaagatattaaaaaaagggagtgacagaacatgtt
aaataatgaaaagattcctgaattggcagaattaatattatacaagtggc
tatacttccaaaattaaatatgtgatgcaatgcctaacaaaattctgatg
tatttcacaggctcagggaaaaaaaaaaagagtataaaaatatatacctt
gcacagtcagaatggctgttgttagtggcaactcatgttggagagggttt
gtaaagatagccttccgactatggtaactgtgaaaacataggtagctccc
agccatctgtaactccagttctagctgatcctatgtccgttttggtcttt
atgaagacaggtatacatgttagcacacagacttgaatacaggcagaaca
ctcaaacacataaaatattaatatagaccaaccaaatgaacttgcgtatt
gctgttctactcactgtagtaaggagtggaggcaacttagtcgtccatca
atagatgaaaggataatgaaaatctggtacacacataaaatgaattatcg
tttcagctgtaaagaaaattgaaatcataaaatgctaagaaaatagatgg
atttagaatataacattaaatgagatta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_52896297_52897352
seq2: B6Ng01-053L02.b_44_1088

seq1  GAATTCCCTGTGTGTCAGTGGTGATTCCTGAGAGAAGAAAAGCACACTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTGTGTGTCAGTGGTGATTCCTGAGAGAAGAAAAGCACACTTC  50

seq1  TCTTGGTTAGCTGTTTTCAGGGGTCTTTCTTCGATTTCCTTTGTGTGCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGGTTAGCTGTTTTCAGGGGTCTTTCTTCGATTTCCTTTGTGTGCAT  100

seq1  GCTTGTCTCTCTCTTCCTTTCCACTCTGCCCTCCTTCTAACATTTCTCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGTCTCTCTCTTCCTTTCCACTCTGCCCTCCTTCTAACATTTCTCTT  150

seq1  TTCATTTTTCCACTCTAACTCTTCATTACCTATATACACACCTCCTCCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTTTTCCACTCTAACTCTTCATTACCTATATACACACCTCCTCCCC  200

seq1  CAAAAAATGTCATTCAAAAAGCAGTTCCTATTTCCTCTGGAAGTTTCCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAAATGTCATTCAAAAAGCAGTTCCTATTTCCTCTGGAAGTTTCCTG  250

seq1  AGCCTTTTTTTTTTTTTTTTTGAGACAGGGTTTCTCTGTGCAGTCCTGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTTTTTTTTTTTTTTTTGAGACAGGGTTTCTCTGTGCAGTCCTGGC  300

seq1  TGTCCTGGAGCTCACTCTGTAGACCAGACTGGCCTCGAACTCAGAAATCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTGGAGCTCACTCTGTAGACCAGACTGGCCTCGAACTCAGAAATCC  350

seq1  GCTTGCCTCTGCCTCTCAAGTGCTGGGATTAAAGGCGTGTGCCACCACTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGCCTCTGCCTCTCAAGTGCTGGGATTAAAGGCGTGTGCCACCACTG  400

seq1  CCTGGCCTGAGCCTTTGCTTTATGGTTTATTTGCAGACAAGAGGGATTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGCCTGAGCCTTTGCTTTATGGTTTATTTGCAGACAAGAGGGATTTA  450

seq1  AACAATAGAAATGATTGAACTTTGCTATTCTGGGGCTAGAGAGATGGCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATAGAAATGATTGAACTTTGCTATTCTGGGGCTAGAGAGATGGCTC  500

seq1  AGTGATTTAGAGTGTTTGTTGCTCTTCTAGAGGACCTGGGTTCAGTTCCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGATTTAGAGTGTTTGTTGCTCTTCTAGAGGACCTGGGTTCAGTTCCC  550

seq1  AGTTCCCAGCACAAACACAGTAGCTCACACTCAACTGTAACTCCAGTTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCCCAGCACAAACACAGTAGCTCACACTCAACTGTAACTCCAGTTCT  600

seq1  AGGGCTTTCACCACCCTCTTCTTACCTTGGTACATGAGGCTTGCAGTTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCTTTCACCACCCTCTTCTTACCTTGGTACATGAGGCTTGCAGTTGT  650

seq1  GTACCTACCTTCAAGCAGGCAAAACATGCAAATAAATAAATAAAATAAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCTACCTTCAAGCAGGCAAAACATGCAAATAAATAAATAAAATAAAG  700

seq1  AAAAGAAAATAGAGATTCCCCACTTTGGTTCCTTGCCATACAATTCTTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAAAATAGAGATTCCCCACTTTGGTTCCTTGCCATACAATTCTTGT  750

seq1  ATGTCCTGTGATCTTCTATGAATGCAC-TTGGTAATATTTTTCCCCCTCA  799
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  ATGTCCTGTGATCTTCTATGAATGCACTTTGGTAATATTTTTCCCCCTCA  800

seq1  GAAATTTGATAATCATTTTCTAAAAGGTCTGTATTCAATAACACAAATCT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTTGATAATCATTTTCTAAAAGGTCTGTATTCAATAACACAAATCT  850

seq1  CCCCCCACCTGCCCAGGCCCCTTCCCCCAGCCCCCAGCCCCTGACCCCCA  899
      ||||||||||||||||||||  | ||||| ||||||| ||||||||| ||
seq2  CCCCCCACCTGCCCAGGCCC--TTCCCCAACCCCCAG-CCCTGACCCTCA  897

seq1  GGTGAAAAAGCAATAGCTGCTTAGTTCTTGTGAATTTCTCTGATTTGTTT  949
      ||||||||||| |||||||| || |||||||| |||||||||||||| ||
seq2  GGTGAAAAAGC-ATAGCTGC-TAATTCTTGTG-ATTTCTCTGATTTG-TT  943

seq1  CTTGCTCGGGGCAGAGAGCAGCTTTAATTTTACAGGTTAGGGAGTGCTGT  999
      ||||||||||||||||||||||||||| |||||||  |||||||||||  
seq2  CTTGCTCGGGGCAGAGAGCAGCTTTAA-TTTACAG--TAGGGAGTGCTTG  990

seq1  GACAGGAAACACCTGGAAGAAACACTACATATAAATCCCACATTTTTAGG  1049
      ||| || ||||||||||||||   |||||||||||||||||  |||||||
seq2  GAC-GGGAACACCTGGAAGAACACCTACATATAAATCCCAC-GTTTTAGG  1038

seq1  CATGAAA  1056
      |||||||
seq2  CATGAAA  1045

seq1: chr2_53024414_53025190
seq2: B6Ng01-053L02.g_71_848 (reverse)

seq1  TAATCTCATTTAATGTTATATTCTAAATCCATCTATTTTCTTAGCATTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCTCATTTAATGTTATATTCTAAATCCATCTATTTTCTTAGCATTTT  50

seq1  ATGATTTCAATTTTCTTTACAGCTG-AACGATAATTCATTTTATGTGTGT  99
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  ATGATTTCAATTTTCTTTACAGCTGAAACGATAATTCATTTTATGTGTGT  100

seq1  ACCAGATTTTCATTATCCTTTCATCTATTGATGGACGACTAAGTTGCCTC  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGATTTTCATTATCCTTTCATCTATTGATGGACGACTAAGTTGCCTC  150

seq1  CACTCCTTACTACAGTGAGTAGAACAGCAATACGCAAGTTCATTTGGTTG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCCTTACTACAGTGAGTAGAACAGCAATACGCAAGTTCATTTGGTTG  200

seq1  GTCTATATTAATATTTTATGTGTTTGAGTGTTCTGCCTGTATTCAAGTCT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTATATTAATATTTTATGTGTTTGAGTGTTCTGCCTGTATTCAAGTCT  250

seq1  GTGTGCTAACATGTATACCTGTCTTCATAAAGACCAAAACGGACATAGGA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGCTAACATGTATACCTGTCTTCATAAAGACCAAAACGGACATAGGA  300

seq1  TCAGCTAGAACTGGAGTTACAGATGGCTGGGAGCTACCTATGTTTTCACA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCTAGAACTGGAGTTACAGATGGCTGGGAGCTACCTATGTTTTCACA  350

seq1  GTTACCATAGTCGGAAGGCTATCTTTACAAACCCTCTCCAACATGAGTTG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACCATAGTCGGAAGGCTATCTTTACAAACCCTCTCCAACATGAGTTG  400

seq1  CCACTAACAACAGCCATTCTGACTGTGCAAGGTATATATTTTTATACTCT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTAACAACAGCCATTCTGACTGTGCAAGGTATATATTTTTATACTCT  450

seq1  TTTTTTTTTTCCCTGAGCCTGTGAAATACATCAGAATTTTGTTAGGCATT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTCCCTGAGCCTGTGAAATACATCAGAATTTTGTTAGGCATT  500

seq1  GCATCACATATTTAATTTTGGAAGTATAGCCACTTGTATAATATTAATTC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCACATATTTAATTTTGGAAGTATAGCCACTTGTATAATATTAATTC  550

seq1  TGCCAATTCAGGAATCTTTTCATTATTTAACATGTTCTGTCACTCCCTTT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAATTCAGGAATCTTTTCATTATTTAACATGTTCTGTCACTCCCTTT  600

seq1  TTTTAATATCTTGAAATTTTTACTATATCCTATTATTTCTTTAGAGTTAT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAATATCTTGAAATTTTTACTATATCCTATTATTTCTTTAGAGTTAT  650

seq1  TTTTAATGGGATTCCTCCCCATTTATTTGAGAATAAATTGCTGTTATACA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAATGGGATTCCTCCCCATTTATTTGAGAATAAATTGCTGTTATACA  700

seq1  TGAAGGCTGTATTTATAGACCAACCAATTATAAGCAATGAGACTGAAGCT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGCTGTATTTATAGACCAACCAATTATAAGCAATGAGACTGAAGCT  750

seq1  GTAATCAGACAGAGTCACTGCTGAATTC  777
      ||||||||||||||||||||||||||||
seq2  GTAATCAGACAGAGTCACTGCTGAATTC  778