BAC Information

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BAC

Clone NameB6Ng01-053M02
Chromosome2 (Build37)
Map Location 21,838,548 - 21,961,338
singlet/doubletdoublet
Overlap genenone
Upstream geneArhgap21, LOC433408, LOC675912, C130046B21Rik, 4933434I06Rik, Thnsl1, Gpr158
Downstream geneLOC637235, Myo3a, LOC100041703, Myo3a, Gad2, Apbb1ip, Pdss1, Abi1, 1200016E24Rik, Acbd5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-053M02.bB6Ng01-053M02.g
ACCDH876709DH876710
length8441,009
definitionDH876709|Mus musculus domesticus DNA, BAC clone: B6Ng01-053M02, 5' end.DH876710|Mus musculus domesticus DNA, BAC clone: B6Ng01-053M02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(21,838,548 - 21,839,389)(21,960,311 - 21,961,338)
sequence
gaattcttgcagcatccaatactcacacaaaaaaaaatctcatcttgaac
ttcctcatcctccctggatctgtggatttcttggactgttctcaccgtag
tactgaactagaccatgttctaggataacatggctctgtcatggatctca
gcaagcacccagatagttcttggagcaaagattgtgggtgaacaaggcta
aatctaaatcatcatgctgcagcgttaaaagctgtccttcccctctaccc
cctcattcttactcccccaattcccacccccctctacccccctcagctag
caaggaatacctgttttattaggcgaaggaaattcatgtgaaataaacca
ttcaaagctatcggagtttggtgtcgtgtacaatacatgacctgaggttt
gtatgcacataaaaactgttcggtagtgggctatttttcttttgaaattt
gccactttgtatggtgaccttttccttaggtgacagttggaggaactttt
agttctaaatgtagtgattaggttgtgaagttggcatatcaaaattataa
tattggatttctatttttaagtgactgtaaaaagactctattccaacaag
aggcgaaacaaattggcattctttataaaataaatgtgggttgtaatgac
cttccttgacagaacaaaatgtggatgaaggagatgggggagaggctgtt
agaacgtgaggacgcaagagtaaatgttcagtcaatttgggagattctga
aagacaagggaggcatctgcatcttcccccccccccccaccgcccaccga
cccgacgcatggatttttaggatcttctttctccaggaggcctg
gaattctttacttatgctatacgaacccacttactcgctacagcacttga
aacagacaaggaatacaattgccctgtggtacagataaggaagtagagac
ggagagctttggcaggttgttcaagatcgtgaacataaagaaccaacatt
catgtacaaaatctgggccaagcagtgctcagtctgtacattaaaccctg
cttgtcctatgttacaatactttctttttactgataaattctacccagag
ttttttatttaaactttcccctttggggttaataaatgtttattattaat
aaatgcttacttacacatatttattcataaattgataaaattattaattt
ttgtcttcattttgagcattttttgcctgccttttgtattttctttttat
tgtgacttcataagacctaatttggatctttctacacattctagaatctt
ctggttgaaattatgaaagcgctctcttagtctttcttcatcttaaaatc
ctaaacccatctccttgaacacgaaatgttttccaaaggagaatggcccg
tggcatttccttcacagttatactgctgtaatgctaaattggatacacca
tcagataacagaaaggggactgcaactcagagacacctgcccactgtttc
ctgacttggatgcagcctgtgatcaaccaggcagctccctgatgctcatc
tcctgcagagatcactcctttgaagtcctggggagggctcctgtcagact
gcagacacaatcagactgtatttagaatgagacaggctgagtcagcctct
gctcgtgactccctgggtgctcatcagaagtctgttagtgctgcagatga
gccatttccttagctcttgtggcctatgtgcaaagtgatgtgcttcttag
ggctgtctctgaaacaacagtaatgtttgtgattaaaaagaaaaaaaaaa
agaagaagaagaagactgccaagatccgttcatgttacacatttttctct
agttcaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_21838548_21839389
seq2: B6Ng01-053M02.b_43_886

seq1  GAATTCTTGCAGCATCCAATACTCACACAAAAAAAAATCTCATCTTGAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGCAGCATCCAATACTCACACAAAAAAAAATCTCATCTTGAAC  50

seq1  TTCCTCATCCTCCCTGGATCTGTGGATTTCTTGGACTGTTCTCACCGTAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCATCCTCCCTGGATCTGTGGATTTCTTGGACTGTTCTCACCGTAG  100

seq1  TACTGAACTAGACCATGTTCTAGGATAACATGGCTCTGTCATGGATCTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGAACTAGACCATGTTCTAGGATAACATGGCTCTGTCATGGATCTCA  150

seq1  GCAAGCACCCAGATAGTTCTTGGAGCAAAGATTGTGGGTGAACAAGGCTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGCACCCAGATAGTTCTTGGAGCAAAGATTGTGGGTGAACAAGGCTA  200

seq1  AATCTAAATCATCATGCTGCAGCGTTAAAAGCTGTCCTTCCCCTCTACCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTAAATCATCATGCTGCAGCGTTAAAAGCTGTCCTTCCCCTCTACCC  250

seq1  CCTCATTCTTACTCCCCCAATTCCCACCCCCCTCTACCCCCCTCAGCTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCATTCTTACTCCCCCAATTCCCACCCCCCTCTACCCCCCTCAGCTAG  300

seq1  CAAGGAATACCTGTTTTATTAGGCGAAGGAAATTCATGTGAAATAAACCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGAATACCTGTTTTATTAGGCGAAGGAAATTCATGTGAAATAAACCA  350

seq1  TTCAAAGCTATCGGAGTTTGGTGTCGTGTACAATACATGACCTGAGGTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAAGCTATCGGAGTTTGGTGTCGTGTACAATACATGACCTGAGGTTT  400

seq1  GTATGCACATAAAAACTGTTCGGTAGTGGGCTATTTTTCTTTTGAAATTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGCACATAAAAACTGTTCGGTAGTGGGCTATTTTTCTTTTGAAATTT  450

seq1  GCCACTTTGTATGGTGACCTTTTCCTTAGGTGACAGTTGGAGGAACTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACTTTGTATGGTGACCTTTTCCTTAGGTGACAGTTGGAGGAACTTTT  500

seq1  AGTTCTAAATGTAGTGATTAGGTTGTGAAGTTGGCATATCAAAATTATAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTAAATGTAGTGATTAGGTTGTGAAGTTGGCATATCAAAATTATAA  550

seq1  TATTGGATTTCTATTTTTAAGTGACTGTAAAAAGACTCTATTCCAACAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGGATTTCTATTTTTAAGTGACTGTAAAAAGACTCTATTCCAACAAG  600

seq1  AGGCGAAACAAATTGGCATTCTTTATAAAATAAATGTGGGTTGTAATGAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCGAAACAAATTGGCATTCTTTATAAAATAAATGTGGGTTGTAATGAC  650

seq1  CTTCCTTGACAGAACAAAATGTGGATGAAGGAGATGGGGGAGAGGCTGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTTGACAGAACAAAATGTGGATGAAGGAGATGGGGGAGAGGCTGTT  700

seq1  AGAACGTGAGGACGCAAGAGT-AATGTTCAGTCAATTTGGGAGATTCTGA  749
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  AGAACGTGAGGACGCAAGAGTAAATGTTCAGTCAATTTGGGAGATTCTGA  750

seq1  AAGACAA-GGAGGCATCTGCATCTTCCCCCCCCCCCCACCCGCCCACCGA  798
      ||||||| |||||||||||||||||||||||||||||  |||||||||||
seq2  AAGACAAGGGAGGCATCTGCATCTTCCCCCCCCCCCCCACCGCCCACCGA  800

seq1  CCCGACGCATGGA-TTTTAGGATCTCTCTATCTCCAGGAGGTCTG  842
      ||||||||||||| ||||||||||| ||| ||||||||||| |||
seq2  CCCGACGCATGGATTTTTAGGATCT-TCTTTCTCCAGGAGGCCTG  844

seq1: chr2_21960311_21961338
seq2: B6Ng01-053M02.g_70_1078 (reverse)

seq1  TTTTGAACTAGAGGAAAAATTGCTGTAAACATGAAACGGATCTTCTGGGC  50
      |||||||||||| |||||||   ||| |||||| ||||||||||   |||
seq2  TTTTGAACTAGA-GAAAAAT--GTGT-AACATG-AACGGATCTT---GGC  42

seq1  AGTTCTTTCTTTCTTTCTTTCTTTTTTTTTTTTCTTTTTTTAATCACAAA  100
      |||       |||||   ||||| ||||||||| | ||||||||||||||
seq2  AGT------CTTCTT--CTTCTTCTTTTTTTTTTTCTTTTTAATCACAAA  84

seq1  CATTACTGTTTGTTTCAGAAGACAGCCCCTAAGAAGCACATCACTTTGCA  150
      |||||||| ||||||||| |||||| ||||||||||||||||||||||||
seq2  CATTACTG-TTGTTTCAG-AGACAG-CCCTAAGAAGCACATCACTTTGCA  131

seq1  CATAGGCCACAAGAGCTAAGGAAATGGCTCATCTGCAGCACTAACAGACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGGCCACAAGAGCTAAGGAAATGGCTCATCTGCAGCACTAACAGACT  181

seq1  TCTGATGAGCACCCAGGGAGTCACGAGCAGAGGCTGACTCAGCCTGTCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGATGAGCACCCAGGGAGTCACGAGCAGAGGCTGACTCAGCCTGTCTC  231

seq1  ATTCTAAATACAGTCTGGTTGTGTCTGCAGTCTGACAGGAGCCCTCCCCA  300
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  ATTCTAAATACAGTCTGATTGTGTCTGCAGTCTGACAGGAGCCCTCCCCA  281

seq1  GGACTTCAAAGGAGTGATCTCTGCAGGAGATGAGCATCAGGGAGCTGCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTTCAAAGGAGTGATCTCTGCAGGAGATGAGCATCAGGGAGCTGCCT  331

seq1  GGTTGATCACAGGCTGCATCCAAGTCAGGAAACAGTGGGCAGGTGTCTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGATCACAGGCTGCATCCAAGTCAGGAAACAGTGGGCAGGTGTCTCT  381

seq1  GAGTTGCAGTCCCCTTTCTGTTATCTGATGGTGTATCCAATTTAGCATTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTGCAGTCCCCTTTCTGTTATCTGATGGTGTATCCAATTTAGCATTA  431

seq1  CAGCAGTATAACTGTGAAGGAAATGCCACGGGCCATTCTCCTTTGGAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGTATAACTGTGAAGGAAATGCCACGGGCCATTCTCCTTTGGAAAA  481

seq1  CATTTCGTGTTCAAGGAGATGGGTTTAGGATTTTAAGATGAAGAAAGACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCGTGTTCAAGGAGATGGGTTTAGGATTTTAAGATGAAGAAAGACT  531

seq1  AAGAGAGCGCTTTCATAATTTCAACCAGAAGATTCTAGAATGTGTAGAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAGCGCTTTCATAATTTCAACCAGAAGATTCTAGAATGTGTAGAAA  581

seq1  GATCCAAATTAGGTCTTATGAAGTCACAATAAAAAGAAAATACAAAAGGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCAAATTAGGTCTTATGAAGTCACAATAAAAAGAAAATACAAAAGGC  631

seq1  AGGCAAAAAATGCTCAAAATGAAGACAAAAATTAATAATTTTATCAATTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAAAAAATGCTCAAAATGAAGACAAAAATTAATAATTTTATCAATTT  681

seq1  ATGAATAAATATGTGTAAGTAAGCATTTATTAATAATAAACATTTATTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATAAATATGTGTAAGTAAGCATTTATTAATAATAAACATTTATTAA  731

seq1  CCCCAAAGGGGAAAGTTTAAATAAAAAACTCTGGGTAGAATTTATCAGTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAAAGGGGAAAGTTTAAATAAAAAACTCTGGGTAGAATTTATCAGTA  781

seq1  AAAAGAAAGTATTGTAACATAGGACAAGCAGGGTTTAATGTACAGACTGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAAAGTATTGTAACATAGGACAAGCAGGGTTTAATGTACAGACTGA  831

seq1  GCACTGCTTGGCCCAGATTTTGTACATGAATGTTGGTTCTTTATGTTCAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTGCTTGGCCCAGATTTTGTACATGAATGTTGGTTCTTTATGTTCAC  881

seq1  GATCTTGAACAACCTGCCAAAGCTCTCCGTCTCTACTTCCTTATCTGTAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTTGAACAACCTGCCAAAGCTCTCCGTCTCTACTTCCTTATCTGTAC  931

seq1  CACAGGGCAATTGTATTCCTTGTCTGTTTCAAGTGCTGTAGCGAGTAAGT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGGCAATTGTATTCCTTGTCTGTTTCAAGTGCTGTAGCGAGTAAGT  981

seq1  GGGTTCGTATAGCATAAGTAAAGAATTC  1028
      ||||||||||||||||||||||||||||
seq2  GGGTTCGTATAGCATAAGTAAAGAATTC  1009