BAC Information

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BAC

Clone NameB6Ng01-053M09
Chromosome2 (Build37)
Map Location 95,707,193 - 95,816,350
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100042843
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-053M09.bB6Ng01-053M09.g
ACCDH876721DH876722
length8141,009
definitionDH876721|Mus musculus domesticus DNA, BAC clone: B6Ng01-053M09, 5' end.DH876722|Mus musculus domesticus DNA, BAC clone: B6Ng01-053M09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(95,707,193 - 95,707,771)(95,815,331 - 95,816,350)
sequence
gaattcatagttttagtattttacatagaaaataagtaatggcaccaaat
cagtgaataaaactttccataaaaagtttagtgacagggcccccaatgga
ggagctaaagaaagtatgcaaggaactaaagagatctgcaaccctgtagg
tgcaacattatgaactaaccagtaccctggagctcttgtctctagctgca
tatgtatcaaaagatggcctagtcggccatcactggaaagagaggcccat
tggacaggcaaactttatatgtcccagtacagtggaacaccagggccaaa
aaatgggaaagagggggatagagtgggggtgacttttgggatagcattgg
aaatgcaattgaggaaaatacgtaataaaaaaaaaagtttagtgaatgat
atcttaggttgtattctagtgctatgataaaataccataaccaaatacaa
cttgaggagaaaggggttcatttaatattacaatttacagtttatcatgg
aaggaagttggggcaggaacttgcaaaaggaactgaacaaaggttatgga
gcaacactgattttttgcttgcttctcttggtttattcagtctgcctttt
tatgccacctatgaccatctgcataggcgtggctctacgtccattgagct
ggcccctcttacataaatcttgaatttaaaaaatagtttagatacctatc
tgcaggcaatatgatgggaacatggttctaagttgaaactactttcctgg
ataactatagcttgtattaacaaagagagagagggagagcaagggagata
gagaaagggagaga
gaattctgcccttacaaggtacacaatatctttctagtccttcctggctt
gatgaagcaaagtatgttcatagaactatgtctatacttttaatcaatac
ccttcagacacttatttctggaccaaaaggcaggcatggaaaggtaaaag
gcaggaaatagggtgtttcggctctgcctattggatttccagattgcttt
gtgtgcttggatattttgttgaacaaataacctcttccatcaaaatgaca
ggtctttttggttaacttgttttcataatatatgtttcatcacctacatt
tatttttattaaacaaggtgtggtgaggaaagagaatgggttttttatac
ctatgggcacttctattttcagcagctattttagttttaattcacatttt
atatcatgttagagtaacatgtagcatgttattaatgccagttttgtaat
aagactactttccactgtcataaactctcataagaattcacggacaggtt
atatcagttgagccccacaagcatttgatgtcacctgacttataaattac
tctgtcccttcagctgatgattgatttctggacataaataacaaagaaaa
tgccaaagtaataattcatccattcttttgtggtcatgacttgtgtttca
gaaacattgtttatcttgctttgattctgactggaggaataatttatctc
cttcacaccccctgcccaaatccacaaacacaccaaccgctttgcatctg
cttcttatgaaaagcaaagggaaagtcacatgtaccgtggatagacaaaa
gagcagtcagccagcagtttatcttgcaagcacaaggacttgagttctat
cctcagaaccatataaaagcccaggcattgtagcacttgcttttaatctg
agtgctgagagctataaaatggtggatctctggactggggaacactgcca
gtatcctatctctgtgacaagtcagtatggaaaatcagccttatacaaag
cgatgacac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_95707193_95707771
seq2: B6Ng01-053M09.b_42_620

seq1  GAATTCATAGTTTTAGTATTTTACATAGAAAATAAGTAATGGCACCAAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATAGTTTTAGTATTTTACATAGAAAATAAGTAATGGCACCAAAT  50

seq1  CAGTGAATAAAACTTTCCATAAAAAGTTTAGTGACAGGGCCCCCAATGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGAATAAAACTTTCCATAAAAAGTTTAGTGACAGGGCCCCCAATGGA  100

seq1  GGAGCTAAAGAAAGTATGCAAGGAACTAAAGAGATCTGCAACCCTGTAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCTAAAGAAAGTATGCAAGGAACTAAAGAGATCTGCAACCCTGTAGG  150

seq1  TGCAACATTATGAACTAACCAGTACCCTGGAGCTCTTGTCTCTAGCTGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAACATTATGAACTAACCAGTACCCTGGAGCTCTTGTCTCTAGCTGCA  200

seq1  TATGTATCAAAAGATGGCCTAGTCGGCCATCACTGGAAAGAGAGGCCCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTATCAAAAGATGGCCTAGTCGGCCATCACTGGAAAGAGAGGCCCAT  250

seq1  TGGACAGGCAAACTTTATATGTCCCAGTACAGTGGAACACCAGGGCCAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACAGGCAAACTTTATATGTCCCAGTACAGTGGAACACCAGGGCCAAA  300

seq1  AAATGGGAAAGAGGGGGATAGAGTGGGGGTGACTTTTGGGATAGCATTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGGAAAGAGGGGGATAGAGTGGGGGTGACTTTTGGGATAGCATTGG  350

seq1  AAATGCAATTGAGGAAAATACGTAATAAAAAAAAAAGTTTAGTGAATGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCAATTGAGGAAAATACGTAATAAAAAAAAAAGTTTAGTGAATGAT  400

seq1  ATCTTAGGTTGTATTCTAGTGCTATGATAAAATACCATAACCAAATACAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTAGGTTGTATTCTAGTGCTATGATAAAATACCATAACCAAATACAA  450

seq1  CTTGAGGAGAAAGGGGTTCATTTAATATTACAATTTACAGTTTATCATGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAGGAGAAAGGGGTTCATTTAATATTACAATTTACAGTTTATCATGG  500

seq1  AAGGAAGTTGGGGCAGGAACTTGCAAAAGGAACTGAACAAAGGTTATGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAGTTGGGGCAGGAACTTGCAAAAGGAACTGAACAAAGGTTATGGA  550

seq1  GCAACACTGATTTTTTGCTTGCTTCTCTT  579
      |||||||||||||||||||||||||||||
seq2  GCAACACTGATTTTTTGCTTGCTTCTCTT  579

seq1: chr2_95815331_95816350
seq2: B6Ng01-053M09.g_70_1078 (reverse)

seq1  GTGTCATCTGCTTTGTATAAGGCTGGATTTTTCCATACTGGACTTGTCAC  50
      |||||||| ||||||||||||||||   ||||||||||| ||||||||||
seq2  GTGTCATC-GCTTTGTATAAGGCTG--ATTTTCCATACT-GACTTGTCAC  46

seq1  AGAGGATAGGATAACTGGCCAGTGTTTCCCAAGTCCAGAGATCCACCATT  100
      ||| |||||||| ||||| ||||| ||||| |||||||||||||||||||
seq2  AGA-GATAGGAT-ACTGG-CAGTG-TTCCCCAGTCCAGAGATCCACCATT  92

seq1  TTATAGCTTCTCAGCACTCAGATTAAAAGCAAGTGCTACAATGCCTGGGC  150
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAGC-TCTCAGCACTCAGATTAAAAGCAAGTGCTACAATGCCTGGGC  141

seq1  TTTTATATGGTTCCTGAGGATAGAACTCAAGTCCTTGTGCTTGCAAGATA  200
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TTTTATATGGTT-CTGAGGATAGAACTCAAGTCCTTGTGCTTGCAAGATA  190

seq1  AACTGCTGGCTGACTGCTCTTTTGTCTATCCACGGTACATGTGACTTTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  AACTGCTGGCTGACTGCTCTTTTGTCTATCCACGGTACATGTGAC-TTTC  239

seq1  CCTTTGCTTTTCATAAGAAGCAGATGCAAAAGCGGTTGGTGTGTTTGTGG  300
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  CCTTTGCTTTTCATAAGAAGCAGATGC-AAAGCGGTTGGTGTGTTTGTGG  288

seq1  ATTTGGGCAGGGGGTGTGAAGGAGATAAATTATTCCTCCAGTCAGAATCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGGGCAGGGGGTGTGAAGGAGATAAATTATTCCTCCAGTCAGAATCA  338

seq1  AAGCAAGATAAACAATGTTTCTGAAACACAAGTCATGACCAC-AAAGAAT  399
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  AAGCAAGATAAACAATGTTTCTGAAACACAAGTCATGACCACAAAAGAAT  388

seq1  GGATGAATTATTACTTTGGCATTTTCTTTGTTATTTATGTCCAGAAATCA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGAATTATTACTTTGGCATTTTCTTTGTTATTTATGTCCAGAAATCA  438

seq1  ATCATCAGCTGAAGGGACAGAGTAATTTATAAGTCAGGTGACATCAAATG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATCAGCTGAAGGGACAGAGTAATTTATAAGTCAGGTGACATCAAATG  488

seq1  CTTGTGGGGCTCAACTGATATAACCTGTCCGTGAATTCTTATGAGAGTTT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTGGGGCTCAACTGATATAACCTGTCCGTGAATTCTTATGAGAGTTT  538

seq1  ATGACAGTGGAAAGTAGTCTTATTACAAAACTGGCATTAATAACATGCTA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACAGTGGAAAGTAGTCTTATTACAAAACTGGCATTAATAACATGCTA  588

seq1  CATGTTACTCTAACATGATATAAAATGTGAATTAAAACTAAAATAGCTGC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTACTCTAACATGATATAAAATGTGAATTAAAACTAAAATAGCTGC  638

seq1  TGAAAATAGAAGTGCCCATAGGTATAAAAAACCCATTCTCTTTCCTCACC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAATAGAAGTGCCCATAGGTATAAAAAACCCATTCTCTTTCCTCACC  688

seq1  ACACCTTGTTTAATAAAAATAAATGTAGGTGATGAAACATATATTATGAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCTTGTTTAATAAAAATAAATGTAGGTGATGAAACATATATTATGAA  738

seq1  AACAAGTTAACCAAAAAGACCTGTCATTTTGATGGAAGAGGTTATTTGTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAGTTAACCAAAAAGACCTGTCATTTTGATGGAAGAGGTTATTTGTT  788

seq1  CAACAAAATATCCAAGCACACAAAGCAATCTGGAAATCCAATAGGCAGAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAAAATATCCAAGCACACAAAGCAATCTGGAAATCCAATAGGCAGAG  838

seq1  CCGAAACACCCTATTTCCTGCCTTTTACCTTTCCATGCCTGCCTTTTGGT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGAAACACCCTATTTCCTGCCTTTTACCTTTCCATGCCTGCCTTTTGGT  888

seq1  CCAGAAATAAGTGTCTGAAGGGTATTGATTAAAAGTATAGACATAGTTCT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAAATAAGTGTCTGAAGGGTATTGATTAAAAGTATAGACATAGTTCT  938

seq1  ATGAACATACTTTGCTTCATCAAGCCAGGAAGGACTAGAAAGATATTGTG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAACATACTTTGCTTCATCAAGCCAGGAAGGACTAGAAAGATATTGTG  988

seq1  TACCTTGTAAGGGCAGAATTC  1020
      |||||||||||||||||||||
seq2  TACCTTGTAAGGGCAGAATTC  1009