BAC Information

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BAC

Clone NameB6Ng01-053P14
Chromosome2 (Build37)18 (Build37)
Map Location 142,776,686 - 142,777,69850,609,977 - 50,610,843
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC668913, LOC668914, Kif16b
Downstream geneSnrpb2, Otor, LOC668915, LOC668916, Pcsk2, Bfsp1, LOC100043799, LOC100043534, Dstn, Rrbp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-053P14.bB6Ng01-053P14.g
ACCDH876856DH876857
length948866
definitionDH876856|Mus musculus domesticus DNA, BAC clone: B6Ng01-053P14, 5' end.DH876857|Mus musculus domesticus DNA, BAC clone: B6Ng01-053P14, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(142,776,686 - 142,777,698)(50,609,977 - 50,610,843)
sequence
gaattctttgttcagttctgagccccatttttaatggggttatttgattt
tctggagtccaccttcttgagttctttatatatattagatattagtcccc
tatctgctttaggataggtaaagatcctttcccaatctgttggtggtctt
tttgtcttattgacggtgtcttttgccttgcagaagctctgcaattttat
gaggtcccatttatcgattctcgatcttacagcacaagccattgctgttc
tattcaggaattttccccctgtacccatatctttgaggcttttccctact
ttcttctctataagtttcagtgtctctggttttatgtggagttccttaat
ccacttagatttgaccttagtacaaggagataaaaatggatcaattcgca
atcttctacatgataacagccagttgtgccagcaccatttgttgaaaatg
ctgtcttttttccactggatggttttagctcccttgtcaaagatcaagtg
accacaggtgtgtgggttcatctctgggtcttcaattctgttccattggt
ctatgtgtctgtcactataccagtaccatgcagtttttatcacagttcct
ctgtagtacagcttttaggttgggcatggtgattccaccagaggttcttt
tatccttgagaagagtttttgctatcctaggttttttgttattccagatg
aatctgccaattgctctttctaattcgttgaagaattgagttggaatttt
tgatggggattgcattgaatctgtagtttgcttttggcaagatagccatt
tttactatattgatcctgccaatccatgagcatgggagatctttccatct
tctgagatcttctttaatttctttcttcagagacatgaagttcttatcat
acagatctttcacttccttagttagagtcatgtcaagttattttatat
gaattctcacaccttactcactatgagatgtgataaaatggtttaacttt
ctgattatcgaattcctcacctcagaattagaataacattattaatatta
ataaatgttcatagggatgattgtaatgtagttgaaagagctcctgagac
ttaaagatacattgatgctagcttccattatttttgttatcacaattact
tttatgaagatctatagacttatgttctgagtacttatatgtgatggtta
tttcaattaaatttaatgatgaagtattgtagtctaacatttcctatgaa
cgataaaggctctaagagtcttcttaatgtcctgactgaaagatgatttt
aaaatcttgaccttctgttgaacttctgacatcataagagcacatgacct
ttacatagttcattttataaacagaaaaatgatagccttgtccataactg
atttagaagcaatgtgaaaatgtcaagtaccttggaagagacaatgactt
ggatagaaatgtgatatatgtatagggattatttcccttctagagagcct
aaaattcctatgttcttaacgaatatagttagtatgttccctgtgaggat
gctaaggtacacatagcacctgcatatgtgatgtctgtttcatagttttg
aactaaagattacaaacatggcccagttttgactctatttttgttgtttg
gttcctgatattggacccctcccatttccctctttgaacacattaattac
cacacaggttaatgaaaaacacctactggtaatagaaagttcactcacac
aagcctctgggtatgtctagcaactcttatcccgtgttaactctctagca
ctatagtactctttat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_142776686_142777698
seq2: B6Ng01-053P14.b_39_590 (reverse)

seq1  AGACCAATGGAATAGAATTGAAGACCCAGAAATGAACCCACACACCTATG  50
      |||||||||||| ||||||||||||||||| |||||||||||||||| ||
seq2  AGACCAATGGAACAGAATTGAAGACCCAGAGATGAACCCACACACCTGTG  50

seq1  GTCACTTGATCTTCGACAAGGGAGCTAAAACCATCCAGAGGAAGAAAGAC  100
      ||||||||||||| |||||||||||||||||||||||| |||| ||||||
seq2  GTCACTTGATCTTTGACAAGGGAGCTAAAACCATCCAGTGGAAAAAAGAC  100

seq1  AGCATTTTCAACAATTGGTGCTGGCACAACTGGTTGTTATCATGTAGAAG  150
      |||||||||||||| |||||||||||||||||| ||||||||||||||||
seq2  AGCATTTTCAACAAATGGTGCTGGCACAACTGGCTGTTATCATGTAGAAG  150

seq1  AATGGGAATCGATCCATACTTATCTCCTTGTACTAAGGTCAAATCTAAGT  200
      | || |||| |||||||  |||||||||||||||||||||||||||||||
seq2  ATTGCGAATTGATCCATTTTTATCTCCTTGTACTAAGGTCAAATCTAAGT  200

seq1  GGATCAAGGAACTTCACATAAAACCAGAGACACTGAAACTTATAGAGGAG  250
      |||| |||||||| ||||||||||||||||||||||||||||||||| ||
seq2  GGATTAAGGAACTCCACATAAAACCAGAGACACTGAAACTTATAGAGAAG  250

seq1  AAAGTGGGGAAAAGCCTTGAAGATATGGGCACAGGGGACAAATTCCTGAA  300
      ||||| |||||||||||  |||||||||| |||||||  |||||||||||
seq2  AAAGTAGGGAAAAGCCTCAAAGATATGGGTACAGGGGGAAAATTCCTGAA  300

seq1  CAGAACAGCAATGGCTTGTGCTGTAAGATCGAGAATTGACAAATGGGACC  350
       ||||||||||||||||||||||||||||||||||| || ||||||||||
seq2  TAGAACAGCAATGGCTTGTGCTGTAAGATCGAGAATCGATAAATGGGACC  350

seq1  TAATGAAACTCCAAAGTTTCTGCAAGGCAAAAGACACCGTCAATAAGACA  400
      | || ||| | || || |||||||||||||||||||||||||||||||||
seq2  TCATAAAATTGCAGAGCTTCTGCAAGGCAAAAGACACCGTCAATAAGACA  400

seq1  AAAAGACCACCAACAGATTGGGAAAGGATCTTTACCTATCCTAAATCAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  AAAAGACCACCAACAGATTGGGAAAGGATCTTTACCTATCCTAAAGCAGA  450

seq1  TAGGGGACTAATATCCAACATATATAAAGAACTCAAGAAGGTGGACTTCA  500
      ||||||||||||||| || |||||||||||||||||||||||||||| ||
seq2  TAGGGGACTAATATCTAATATATATAAAGAACTCAAGAAGGTGGACTCCA  500

seq1  GAAAATCAAATAACCCCATTAAAAAATGGGGCTCACAAAACCATCCAGTG  550
      |||||||||||||||||||| |||||||||||||| ||            
seq2  GAAAATCAAATAACCCCATT-AAAAATGGGGCTCAGAA----------CT  539

seq1  GAAGAAAGACAGCATTTTCAACAATTGGTGCTGGCACAACTGGTTGTTAT  600
      ||| |||||    |||                                  
seq2  GAACAAAGA----ATTC---------------------------------  552

seq1  CATGTAGAAGAATGCGAATCGATCCATACTTATCTCCTTGTACTAAGGTC  650
                                                        
seq2  --------------------------------------------------  552

seq1  AAATCTAAGTGGATCAAGGAACTTCACATAAAACCAGAGACACTGAAACT  700
                                                        
seq2  --------------------------------------------------  552

seq1  TATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATATGGGCACAGGGGAAA  750
                                                        
seq2  --------------------------------------------------  552

seq1  AATTCCTGAACAGAAGAGCAATGGCTTGTGCTGTAAGATCGAGAATTGAC  800
                                                        
seq2  --------------------------------------------------  552

seq1  AAATGGGACCTAATGAAACTCCAAAGTTTCTGCAAGGCAAAAGACACTGT  850
                                                        
seq2  --------------------------------------------------  552

seq1  CTATAAGACAAAAAGACCACCAACAGACTGGGAAAGGATCTTTACCTATC  900
                                                        
seq2  --------------------------------------------------  552

seq1  CTAAATCAGATAGGGGACTAATATCCAACATATATAAAGAACTCAAGAAG  950
                                                        
seq2  --------------------------------------------------  552

seq1  GTGGACCTCAGAAAATCAAATAACCCCATTAAAAAATGGGGCTCAGAACT  1000
                                                        
seq2  --------------------------------------------------  552

seq1  GAACAAAGAATTC  1013
                   
seq2  -------------  552

seq1: chr18_50609977_50610843
seq2: B6Ng01-053P14.g_71_936 (reverse)

seq1  ATAAAGAGTACTATAGTGCTAGAGAGTTGAACACGGGATAAGAGTTGCTA  50
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  ATAAAGAGTACTATAGTGCTAGAGAGTT-AACACGGGATAAGAGTTGCTA  49

seq1  GACATACACAGAGGCTTGTGTGAGTTGAACTTTCTATTACCAGTAGGTGT  100
      ||||||| |||||||||||||||| |||||||||||||||||||||||||
seq2  GACATACCCAGAGGCTTGTGTGAG-TGAACTTTCTATTACCAGTAGGTGT  98

seq1  TTTTCATTAACCTGTGTGGTAATTAATGTGTTCAAAGAGGGAAATGGGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCATTAACCTGTGTGGTAATTAATGTGTTCAAAGAGGGAAATGGGAG  148

seq1  GGGTCCAATATCAGGAACCAAACAACAAAAATAGAGTC-AAACTGGGCCA  199
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  GGGTCCAATATCAGGAACCAAACAACAAAAATAGAGTCAAAACTGGGCCA  198

seq1  TGTTTGTAATCTTTAGTTCAAAACTATGAGACAGACATCACATATGCAGG  249
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TGTTTGTAATCTTTAGTTCAAAACTATGAAACAGACATCACATATGCAGG  248

seq1  TGCTATGTGTACCTTAGCATCCTCACAGGGAACATACTAACTATATTCGT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTATGTGTACCTTAGCATCCTCACAGGGAACATACTAACTATATTCGT  298

seq1  TAAGAACATAGGAATTTTAGGCTCTCTAGAAGGGAAATAATCCCTATACA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAACATAGGAATTTTAGGCTCTCTAGAAGGGAAATAATCCCTATACA  348

seq1  TATATCACATTTCTATCCAAGTCATTGTCTCTTCCAAGGTACTTGACATT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATCACATTTCTATCCAAGTCATTGTCTCTTCCAAGGTACTTGACATT  398

seq1  TTCACATTGCTTCTAAATCAGTTATGGACAAGGCTATCATTTTTCTGTTT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACATTGCTTCTAAATCAGTTATGGACAAGGCTATCATTTTTCTGTTT  448

seq1  ATAAAATGAACTATGTAAAGGTCATGTGCTCTTATGATGTCAGAAGTTCA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAATGAACTATGTAAAGGTCATGTGCTCTTATGATGTCAGAAGTTCA  498

seq1  ACAGAAGGTCAAGATTTTAAAATCATCTTTCAGTCAGGACATTAAGAAGA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAGGTCAAGATTTTAAAATCATCTTTCAGTCAGGACATTAAGAAGA  548

seq1  CTCTTAGAGCCTTTATCGTTCATAGGAAATGTTAGACTACAATACTTCAT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTAGAGCCTTTATCGTTCATAGGAAATGTTAGACTACAATACTTCAT  598

seq1  CATTAAATTTAATTGAAATAACCATCACATATAAGTACTCAGAACATAAG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAAATTTAATTGAAATAACCATCACATATAAGTACTCAGAACATAAG  648

seq1  TCTATAGATCTTCATAAAAGTAATTGTGATAACAAAAATAATGGAAGCTA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATAGATCTTCATAAAAGTAATTGTGATAACAAAAATAATGGAAGCTA  698

seq1  GCATCAATGTATCTTTAAGTCTCAGGAGCTCTTTCAACTACATTACAATC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCAATGTATCTTTAAGTCTCAGGAGCTCTTTCAACTACATTACAATC  748

seq1  ATCCCTATGAACATTTATTAATATTAATAATGTTATTCTAATTCTGAGGT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCTATGAACATTTATTAATATTAATAATGTTATTCTAATTCTGAGGT  798

seq1  GAGGAATTCGATAATCAGAAAGTTAAACCATTTTATCACATCTCATAGTG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAATTCGATAATCAGAAAGTTAAACCATTTTATCACATCTCATAGTG  848

seq1  AGTAAGGTGTGAGAATTC  867
      ||||||||||||||||||
seq2  AGTAAGGTGTGAGAATTC  866