BAC Information

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BAC

Clone NameB6Ng01-054B23
Chromosome2 (Build37)10 (Build37)
Map Location 81,285,709 - 81,286,847104,054,623 - 104,054,969
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneFrzb, Nckap1, LOC624223, Dusp19, LOC672381, Nup35, LOC103324, LOC668027, LOC100040624, LOC100040655
Downstream geneLOC100040704, Zfp804a, LOC100041308, A130030D18Rik, EG624362
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-054B23.bB6Ng01-054B23.g
ACCDH876961DH876962
length1,128958
definitionDH876961|Mus musculus domesticus DNA, BAC clone: B6Ng01-054B23, 5' end.DH876962|Mus musculus domesticus DNA, BAC clone: B6Ng01-054B23, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(81,285,709 - 81,286,847)(104,054,623 - 104,054,969)
sequence
gaattccaggacaaccagggctgtactaagaaaccctacctcgaaaaacc
aaacaaacaaaaacaaacaaacaaataagaaaaacaaaaaaacaaaaaac
cccacaaaacaaaaaaccaaaatattatagtgtttaattgcttggtacta
aaccacttttagttttatacttatagactttgtataagaacatacaaata
tctgatcccgtttcctttttcctcttcccctcccctctcccactcaaatc
cctctcttcctctgcctcctgtgattattttcttctccctactaagaggg
attgaggcatcctcacttggactttctgcttgttaaacttcttaaattct
gtgggtaatatcctaggtattttataatattttggttagtatctatttat
tagtgagtgcatagcatgtatgtcattttgtgtctgggctacctcactca
gaatgatattttctagttctatccatttacttgcaaaattcttgatgtct
ccattcttaatagctgaataatgttccattgtgtaaatgaatcacatttt
gtatatccattttttggttgtgggacatctgggttgtttccagcttctag
ctatcacaaataaggccccatgagctttagtacagtagggcatcttttgg
gtatatgcccaaaagtggtatagctgggtcttcaggtaggtctgtttcca
aactgtatgagggttgggggcaggagaaaatccaagagggtcagaaggtg
ggaggtggggaggccctctagaaagtaccagagacccaggagacgagaga
ctctcagactcaatagtagtgaccttagatgaaatgcccaagtgtaagga
gcaggaactcaagaactcaccttcagtagatagggcctcagaggaggggt
ggtgttaccaacctacagtcaaaatttctgaccagatttgttcctgtcta
aagactgcaggaacaaaaatgaagaggagactgagggaaaggcagttcag
tgaccagtccacctcatggggagacaccaagcctgacacttatgattgat
gctatattgtgcttattgacagaactatcatggctgtctctgagaaaccc
tacagcagctgactgagacgatgcagat
gaattctttaaagttgtactacagtgcaatagtgataaaaactgcacggt
actggtatagcgacagacaagtagaccaatggaatataattgaagaccca
gaaatgaactcacacacctatggtcacttgatctttgacaagggagctaa
aaccatccagtggaaaaaagacagcattttcaacaaatggtgctggcaca
actggcggttatcatgtagaagaatgtgatgatccattcctatctccttg
tactaaggtcaaatctaagtggatcaaggaactccacataaaaccagaga
cactgaaacttatagaggagaaagtggggaaaagcctcgaagatatgggc
acaggggatcataatttaaattcatttatataaatatcctgaagcagaat
tgcagcaatgcactgtagttctatttttaacgttttaaggattctcaata
cccttttctatgattgctgcagaattttgtatgcagtgcccaagatttca
tttttattcatcctaaacaatgcttattattttacattattttactagtg
tccatcatgaatggatacattgctttgagttaactctccttgattatctg
tgttcttaagtaaccttttacatatcatttggctttcctatatctccttt
gggagtcattatattcagatttctcgttaatatgaaattgaattattagt
tgttttttagcaaccaagatgcatgagttcctgatatattctgaaaattc
attacaaatctgatgtgaagtgcgaagcattttctctcattcagccgggt
tatttttttttcttcattgtaaatattgtttcttttgctgaatagaacat
atttaaaaagaggaaagattttaaaaagagaaaaccttacatatggtagc
acttagtgaacctttgtggaccctgttaagtttcatgagccagtcacaca
gtatcatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_81285709_81286847
seq2: B6Ng01-054B23.b_46_1173

seq1  GAATTCCAGGACAACCAGGGCTGTACTAAGAAACCCTACCTCGAAAAACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGACAACCAGGGCTGTACTAAGAAACCCTACCTCGAAAAACC  50

seq1  AAACAAACAAAAACAAACAAACAAATAAGAAAAACAAAAAAACAAAAAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAACAAAAACAAACAAACAAATAAGAAAAACAAAAAAACAAAAAAC  100

seq1  CCCACAAAACAAAAAACCAAAATATTATAGTGTTTAATTGCTTGGTACTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACAAAACAAAAAACCAAAATATTATAGTGTTTAATTGCTTGGTACTA  150

seq1  AACCACTTTTAGTTTTATACTTATAGACTTTGTATAAGAACATACAAATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCACTTTTAGTTTTATACTTATAGACTTTGTATAAGAACATACAAATA  200

seq1  TCTGATCCCGTTTCCTTTTTCCTCTTCCCCTCCCCTCTCCCACTCAAATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGATCCCGTTTCCTTTTTCCTCTTCCCCTCCCCTCTCCCACTCAAATC  250

seq1  CCTCTCTTCCTCTGCCTCCTGTGATTATTTTCTTCTCCCTACTAAGAGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCTTCCTCTGCCTCCTGTGATTATTTTCTTCTCCCTACTAAGAGGG  300

seq1  ATTGAGGCATCCTCACTTGGACTTTCTGCTTGTTAAACTTCTTAAATTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAGGCATCCTCACTTGGACTTTCTGCTTGTTAAACTTCTTAAATTCT  350

seq1  GTGGGTAATATCCTAGGTATTTTATAATATTTTGGTTAGTATCTATTTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGTAATATCCTAGGTATTTTATAATATTTTGGTTAGTATCTATTTAT  400

seq1  TAGTGAGTGCATAGCATGTATGTCATTTTGTGTCTGGGCTACCTCACTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGAGTGCATAGCATGTATGTCATTTTGTGTCTGGGCTACCTCACTCA  450

seq1  GAATGATATTTTCTAGTTCTATCCATTTACTTGCAAAATTCTTGATGTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGATATTTTCTAGTTCTATCCATTTACTTGCAAAATTCTTGATGTCT  500

seq1  CCATTCTTAATAGCTGAATAATGTTCCATTGTGTAAATGAATCACATTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTCTTAATAGCTGAATAATGTTCCATTGTGTAAATGAATCACATTTT  550

seq1  GTATATCCATTTTTTGGTTGTGGGACATCTGGGTTGTTTCCAGCTTCTAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATATCCATTTTTTGGTTGTGGGACATCTGGGTTGTTTCCAGCTTCTAG  600

seq1  CTATCACAAATAAGGCCCCATGAGCTTTAGTACAGTAGGGCATCTTTTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCACAAATAAGGCCCCATGAGCTTTAGTACAGTAGGGCATCTTTTGG  650

seq1  GTATATGCCCAAAAGTGGTATAGCTGGGTCTTCAGGTAGGTCTGTTTCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATATGCCCAAAAGTGGTATAGCTGGGTCTTCAGGTAGGTCTGTTTCCA  700

seq1  AACTGTATGAGGGTTGGGGGCAGGAGAAAATCCAAGAGGGTCAGAAGGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGTATGAGGGTTGGGGGCAGGAGAAAATCCAAGAGGGTCAGAAGGTG  750

seq1  GGAGGTGGGGAGGCCCTCTAGAAAGTACCAGAGACCCAGGAGACGAGAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGTGGGGAGGCCCTCTAGAAAGTACCAGAGACCCAGGAGACGAGAGA  800

seq1  CTCTCAGGACTCAATAGTAGTGACCTTAGATGAAATGCCCAAGTGTAAGG  850
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCA-GACTCAATAGTAGTGACCTTAGATGAAATGCCCAAGTGTAAGG  849

seq1  AGCAGGAACTCAAAGAACTCACCTTCAGTAGATAGGGCCTCAAGAGGAGG  900
      ||||||||||| ||||||||||||||||||||||||||||| ||||||||
seq2  AGCAGGAACTC-AAGAACTCACCTTCAGTAGATAGGGCCTC-AGAGGAGG  897

seq1  GGTGGTGTTACCAACCTACAGTCAAAATTTCTGACCCAGATTTGTTCCTG  950
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  GGTGGTGTTACCAACCTACAGTCAAAATTTCTGA-CCAGATTTGTTCCTG  946

seq1  TCTAAAAGAACTGCAGGAACAAAAATGAAGAGGAGACTGAGGGAAAGGCA  1000
      ||||||   |||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAA--GACTGCAGGAACAAAAATGAAGAGGAGACTGAGGGAAAGGCA  994

seq1  GTTCAGTGACCAGTCCACCTCATGGGGAGACACCAAGGCCTGACAC-TAT  1049
      |||||||||||||||||||||||||||||||||||| ||||||||| |||
seq2  GTTCAGTGACCAGTCCACCTCATGGGGAGACACCAA-GCCTGACACTTAT  1043

seq1  GATTGATGCTATATTGTGCTTATTGACAGGAGCTTATCATGGCTGTCCTC  1099
      ||||||||||||||||||||||||||||| |   |||||||||||| |||
seq2  GATTGATGCTATATTGTGCTTATTGACAGAA--CTATCATGGCTGT-CTC  1090

seq1  TGAGAAACCCTACCAGCAGCTGACTGAGACAGATGCAGAT  1139
      |||||||||||| ||||||||||||||||| |||||||||
seq2  TGAGAAACCCTA-CAGCAGCTGACTGAGAC-GATGCAGAT  1128

seq1: chr10_104054623_104054969
seq2: B6Ng01-054B23.g_79_422 (reverse)

seq1  TCCCCTGTACCCATATCTTCGAGGCTTTTCCCTACTTTTTCCTCTATAAG  50
      |||||||| ||||||||||||||||||||||| ||||| |||||||||||
seq2  TCCCCTGTGCCCATATCTTCGAGGCTTTTCCCCACTTTCTCCTCTATAAG  50

seq1  TTTCAGTGTCTCTGGTTTTATGTGGAGTTCCTTAATCCACTTAGATTTTA  100
      ||||||||||||||||||||||||||||||||| |||||||||||||| |
seq2  TTTCAGTGTCTCTGGTTTTATGTGGAGTTCCTTGATCCACTTAGATTTGA  100

seq1  CCTTAGTACAAGGAGATAGTAATTGATCAATTCACAATCTTCTACATGAT  150
      ||||||||||||||||||| ||| |||||  ||||| |||||||||||||
seq2  CCTTAGTACAAGGAGATAGGAATGGATCA--TCACATTCTTCTACATGAT  148

seq1  AACAGCCAGTTGTGCCAGCATGATTTGTTGAAAATGCTGTCTTTTTTTCC  200
      ||| ||||||||||||||||  ||||||||||||||||||| ||||||||
seq2  AACCGCCAGTTGTGCCAGCACCATTTGTTGAAAATGCTGTC-TTTTTTCC  197

seq1  ACTGGATAGTTTTAGCTCCCTTGTCAAAGATCAAGTGACCATAGGTGTGT  250
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGATGGTTTTAGCTCCCTTGTCAAAGATCAAGTGACCATAGGTGTGT  247

seq1  GGGTTCATCTCTGGATCTTCAATTCTGTTCCATTGGTCTACTTGTCTGTC  300
      | |||||| ||||| ||||||||| | |||||||||||||||||||||||
seq2  GAGTTCATTTCTGGGTCTTCAATTATATTCCATTGGTCTACTTGTCTGTC  297

seq1  GCTATACAAGTACCATGCAGTTTTTATCACAATTGCTCTGTAGTACA  347
      ||||||| |||||| ||||||||||||||| ||||| ||||||||||
seq2  GCTATACCAGTACCGTGCAGTTTTTATCACTATTGCACTGTAGTACA  344