BAC Information

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BAC

Clone NameB6Ng01-054K05
Chromosome2 (Build37)
Map Location 101,802,260 - 101,945,827
singlet/doubletdoublet
Overlap geneLdlrad3
Upstream geneB230118H07Rik, Rag2, Rag1, LOC100042930, Traf6, 2600010E01Rik, LOC100043302, Commd9
Downstream geneLOC674202, Trim44, Fjx1, E430002G05Rik, Slc1a2, Cd44, Pdhx, Apip
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-054K05.bB6Ng01-054K05.g
ACCDH877329DH877330
length9621,146
definitionDH877329|Mus musculus domesticus DNA, BAC clone: B6Ng01-054K05, 5' end.DH877330|Mus musculus domesticus DNA, BAC clone: B6Ng01-054K05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(101,802,260 - 101,803,225)(101,944,660 - 101,945,827)
sequence
gaattcaaccagagtgaaagaaatgaagacttcccacatgggaatagtcg
gccactgtccacgtggtctggcagagactgcggcaagctaagggtagaga
gtgccgataggggcaaggcacagcttctcggtgtgtgtgcacgtgcatgc
atgcctgtctgtgtgtgtgtgtctatgtgagtgtgtctgtgtgtgtgtgc
acgtgcatgcatgcctgtctgtgtgtgtgtgtctatgtgtgtgtgtgtgt
gtgtgtgtgcacgtgcatgcatgcctgtgtgtgtgtgtctatgtgtgtgt
gtgtctgtgtactgagtggtggctgctggtacagagtggctgaggctctc
actgtcatgaggagtcttgtgcaatcagtcaagggagaaagtctgccttc
tcctattcgcttcttaattggaagcagagacccaacgaggaggcagtcag
tcgctcatcatgccctcgctgattggggctcattggtactgggattcatt
ggcttcctggattatttcagagacagcagtctgcctgcacggctgtccta
gagcagaccagaacaaactgctttcctgggttggccatagcagggtccga
gttgttttcccacaggcctgctaattcattctttttctctctcccctgct
tccccatccctttccaattcctgtctccaaatgccccaaatcccatttca
tctgagtccccagcttaacctgccctagtacaatgttcagtttccctgca
tctaatctcggggactgtgagggtcaggtactgaacgggaaacacaggag
catctacttagaaggagcaggttgcccagtattagtccgggtctgggagt
tttagaggcaggttagcatcctgtcctgtttgccaggaactagatggatg
attaagccactaactccacccttctaaaactctctgcaaaactggggttc
aaacctgcggtc
gaattccacaggcttctgaaggagttggacttctgacaacagaagtggcc
ctcagagtggcccagagactgattgtggtttcatgctgacccatgtgtat
actcttgtgtgttctttctttcctacttgtgttattttgctgtgtgtttt
taaatacctctggtaactcagtcacgtccagacccttgggttcttccatc
ccaaaggtgaaatcatatatcctatagttcagaacagggctttagggcca
gaccatgctgggttctcacagtccccgacgccctcagtgctactatactt
ttctcagcacatacttccttggctataagataagggactgtctccgcacc
ttcaccagagggcatgttcaaatcattcattgcatgatgtaatcagaaag
aagctgatcttatccaataggtattgtgcctcgggcaacagtatactatc
cacctctgaacaagcagaaaattgcgtgaggtctctatctgcccagcatg
gtatggtcggctgcagcctccacatgcccggtccctcaccttcctacact
ccagtaagcgaggctctgccacagaaactgttttatttcctggctcaata
tctttttgtttgagggagtctttagccagccaatgtcaaaatgtccttca
gcttatctctctagagagccagctggatacccaagctggtgccagaggga
aaaagaacaaatctttgcagacctgagttgagtgtggctcttggtggagc
ctcctctgcattcttcccagagtctcagcctcagtgaacctgcagtgaac
ctggagttggtccccaactgccagagtggctgtggttggcttgtcctcag
agctgagcatacctatgtggatttgtctgggtgtgttcgttttgtgacct
gtagccttctccagtacctgtgcatagagacctttcacttcatacactgg
cctgaaaccattttaaacttgatgcagacgctcttctccttcttccccac
gcttgcatttatacctgtacagcgcatgagaaagatcctggtttgatgta
agaatccttcattcctagtagacttgcagtcctatattaggaacaattca
gtgtcgactccataatcttctctcttgcagccttgcttaagaaccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_101802260_101803225
seq2: B6Ng01-054K05.b_49_1010

seq1  GAATTCAACCAGAGTGAAAGAAATGAAGACTTCCCACATGGGAATAGTCG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACCAGAGTGAAAGAAATGAAGACTTCCCACATGGGAATAGTCG  50

seq1  GCCACTGTCCACGTGGTCTGGCAGAGACTGCGGCAAGCTAAGGGTAGAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACTGTCCACGTGGTCTGGCAGAGACTGCGGCAAGCTAAGGGTAGAGA  100

seq1  GTGCCGATAGGGGCAAGGCACAGCTTCTCGGTGTGTGTGCACGTGCATGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCGATAGGGGCAAGGCACAGCTTCTCGGTGTGTGTGCACGTGCATGC  150

seq1  ATGCCTGTCTGTGTGTGTGTGTCTATGTGAGTGTGTCTGTGTGTGTGTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCTGTCTGTGTGTGTGTGTCTATGTGAGTGTGTCTGTGTGTGTGTGC  200

seq1  ACGTGCATGCATGCCTGTCTGTGTGTGTGTGTCTATGTGTGTGTGTGTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTGCATGCATGCCTGTCTGTGTGTGTGTGTCTATGTGTGTGTGTGTGT  250

seq1  GTGTGTGTGCACGTGCATGCATGCCTGTGTGTGTGTGTCTATGTGTGTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGCACGTGCATGCATGCCTGTGTGTGTGTGTCTATGTGTGTGT  300

seq1  GTGTCTGTGTACTGAGTGGTGGCTGCTGGTACAGAGTGGCTGAGGCTCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCTGTGTACTGAGTGGTGGCTGCTGGTACAGAGTGGCTGAGGCTCTC  350

seq1  ACTGTCATGAGGAGTCTTGTGCAATCAGTCAAGGGAGAAAGTCTGCCTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTCATGAGGAGTCTTGTGCAATCAGTCAAGGGAGAAAGTCTGCCTTC  400

seq1  TCCTATTCGCTTCTTAATTGGAAGCAGAGACCCAACGAGGAGGCAGTCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTATTCGCTTCTTAATTGGAAGCAGAGACCCAACGAGGAGGCAGTCAG  450

seq1  TCGCTCATCATGCCCTCGCTGATTGGGGCTCATTGGTACTGGGATTCATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCTCATCATGCCCTCGCTGATTGGGGCTCATTGGTACTGGGATTCATT  500

seq1  GGCTTCCTGGATTATTTCAGAGACAGCAGTCTGCCTGCACGGCTGTCCTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTCCTGGATTATTTCAGAGACAGCAGTCTGCCTGCACGGCTGTCCTA  550

seq1  GAGCAGACCAGAACAAACTGCTTTCCTGGGTTGGCCATAGCAGGGTCCGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGACCAGAACAAACTGCTTTCCTGGGTTGGCCATAGCAGGGTCCGA  600

seq1  GTTGTTTTCCCACAGGCCTGCTAATTCATTC-TTTTCTCTCTCCCCTGCT  649
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  GTTGTTTTCCCACAGGCCTGCTAATTCATTCTTTTTCTCTCTCCCCTGCT  650

seq1  TCCCCATCCCTTTCCAATTCCTGTCTCCAAATGCCCCAAATCCCATTTCA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCATCCCTTTCCAATTCCTGTCTCCAAATGCCCCAAATCCCATTTCA  700

seq1  TCTGAGTCCCCAGCTTAACCTGCCCTAGTACAATGTTCAGTTTCCCTGCA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGTCCCCAGCTTAACCTGCCCTAGTACAATGTTCAGTTTCCCTGCA  750

seq1  TCTAATCTCGGGGACTGTGAGGGTCAGGTACTGAAC-GGAAACACAGGAG  798
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TCTAATCTCGGGGACTGTGAGGGTCAGGTACTGAACGGGAAACACAGGAG  800

seq1  CATCTACTTAGAAGGAGCAGGGTGCCCAGTACTTAGTCCGGGTCTGGGAG  848
      ||||||||||||||||||||| ||||||||| ||||||||||||||||||
seq2  CATCTACTTAGAAGGAGCAGGTTGCCCAGTA-TTAGTCCGGGTCTGGGAG  849

seq1  TTTTAGAGGCAGGGTTAGCATCCTGTCCTGTTTGCCAGGAACTAGATGGA  898
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGAGGCA-GGTTAGCATCCTGTCCTGTTTGCCAGGAACTAGATGGA  898

seq1  TGACTAAGGGCCACTAACTCCACCCTTCTAAAAACTCTCTGCAAAACTGG  948
      ||| |||  |||||||||||||||||||| ||||||||||||||||||||
seq2  TGATTAA--GCCACTAACTCCACCCTTCT-AAAACTCTCTGCAAAACTGG  945

seq1  GGTTCAAAGCCTGCGGTC  966
      |||||||| |||||||||
seq2  GGTTCAAA-CCTGCGGTC  962

seq1: chr2_101944660_101945827
seq2: B6Ng01-054K05.g_66_1211 (reverse)

seq1  GGGTCTCTTAAGCAAAGGCTGCAAGAGAGAAGATTTATGGGAAGTCTGAC  50
      |||| |||||||| ||||||||||||||||||| ||||||  |||| |||
seq2  GGGT-TCTTAAGC-AAGGCTGCAAGAGAGAAGA-TTATGG--AGTC-GAC  44

seq1  AACCTGGATTTGTTCCT-ATATAGGTGACTGGCAGGTCCTACCTAGGAAT  99
      |  || || |||||||| ||||||  |||| ||| || ||| ||||||||
seq2  A--CT-GAATTGTTCCTAATATAG--GACT-GCAAGT-CTA-CTAGGAAT  86

seq1  GAGGGATTCTAACATCAGAACCAAGAATCTTTTCTCATGGCGGCTGTACA  149
      || ||||||| |||||| |||| || ||| |||||||||   ||||||||
seq2  GAAGGATTCTTACATCA-AACC-AGGATC-TTTCTCATG--CGCTGTACA  131

seq1  GGTATAAAATGCAAGCGTGGGGGAAGAGGGAGAGGAGCGTCTGCATCAAG  199
      ||||| |||||||||||| |||||||| ||||| ||||||||||||||||
seq2  GGTAT-AAATGCAAGCGT-GGGGAAGAAGGAGAAGAGCGTCTGCATCAAG  179

seq1  TTTTAAAATGGTTTCAGGCCAGTGTATGAAGTGAAAGGTCTCTATGCACA  249
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -TTTAAAATGGTTTCAGGCCAGTGTATGAAGTGAAAGGTCTCTATGCACA  228

seq1  GGTACTGGAGAAGGCTACAGGTCACAAAACGGAACACAACCAGACAAATC  299
      |||||||||||||||||||||||||||||| ||||||| |||||||||||
seq2  GGTACTGGAGAAGGCTACAGGTCACAAAAC-GAACACACCCAGACAAATC  277

seq1  CACATAGGTATGCTCAGCTCTGAGGACAAGCCAACCACAGCCACTCTGGC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATAGGTATGCTCAGCTCTGAGGACAAGCCAACCACAGCCACTCTGGC  327

seq1  AGTTGGGGACCAACTCCAGGTTCACTGCAGGTTCACTGAGGCTGAGACTC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGGGGACCAACTCCAGGTTCACTGCAGGTTCACTGAGGCTGAGACTC  377

seq1  TGGGAAGAATGCAGAGGAGGCTCCACCAAGAGCCACACTCAACTCAGGTC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAAGAATGCAGAGGAGGCTCCACCAAGAGCCACACTCAACTCAGGTC  427

seq1  TGCAAAGATTTGTTCTTTTTCCCTCTGGCACCAGCTTGGGTATCCAGCTG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAAGATTTGTTCTTTTTCCCTCTGGCACCAGCTTGGGTATCCAGCTG  477

seq1  GCTCTCTAGAGAGATAAGCTGAAGGACATTTTGACATTGGCTGGCTAAAG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTCTAGAGAGATAAGCTGAAGGACATTTTGACATTGGCTGGCTAAAG  527

seq1  ACTCCCTCAAACAAAAAGATATTGAGCCAGGAAATAAAACAGTTTCTGTG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCCTCAAACAAAAAGATATTGAGCCAGGAAATAAAACAGTTTCTGTG  577

seq1  GCAGAGCCTCGCTTACTGGAGTGTAGGAAGGTGAGGGACCGGGCATGTGG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGCCTCGCTTACTGGAGTGTAGGAAGGTGAGGGACCGGGCATGTGG  627

seq1  AGGCTGCAGCCGACCATACCATGCTGGGCAGATAGAGACCTCACGCAATT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGCAGCCGACCATACCATGCTGGGCAGATAGAGACCTCACGCAATT  677

seq1  TTCTGCTTGTTCAGAGGTGGATAGTATACTGTTGCCCGAGGCACAATACC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCTTGTTCAGAGGTGGATAGTATACTGTTGCCCGAGGCACAATACC  727

seq1  TATTGGATAAGATCAGCTTCTTTCTGATTACATCATGCAATGAATGATTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGGATAAGATCAGCTTCTTTCTGATTACATCATGCAATGAATGATTT  777

seq1  GAACATGCCCTCTGGTGAAGGTGCGGAGACAGTCCCTTATCTTATAGCCA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACATGCCCTCTGGTGAAGGTGCGGAGACAGTCCCTTATCTTATAGCCA  827

seq1  AGGAAGTATGTGCTGAGAAAAGTATAGTAGCACTGAGGGCGTCGGGGACT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGTATGTGCTGAGAAAAGTATAGTAGCACTGAGGGCGTCGGGGACT  877

seq1  GTGAGAACCCAGCATGGTCTGGCCCTAAAGCCCTGTTCTGAACTATAGGA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGAACCCAGCATGGTCTGGCCCTAAAGCCCTGTTCTGAACTATAGGA  927

seq1  TATATGATTTCACCTTTGGGATGGAAGAACCCAAGGGTCTGGACGTGACT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGATTTCACCTTTGGGATGGAAGAACCCAAGGGTCTGGACGTGACT  977

seq1  GAGTTACCAGAGGTATTTAAAAACACACAGCAAAATAACACAAGTAGGAA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTACCAGAGGTATTTAAAAACACACAGCAAAATAACACAAGTAGGAA  1027

seq1  AGAAAGAACACACAAGAGTATACACATGGGTCAGCATGAAACCACAATCA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGAACACACAAGAGTATACACATGGGTCAGCATGAAACCACAATCA  1077

seq1  GTCTCTGGGCCACTCTGAGGGCCACTTCTGTTGTCAGAAGTCCAACTCCT  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTGGGCCACTCTGAGGGCCACTTCTGTTGTCAGAAGTCCAACTCCT  1127

seq1  TCAGAAGCCTGTGGAATTC  1168
      |||||||||||||||||||
seq2  TCAGAAGCCTGTGGAATTC  1146