BAC Information

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BAC

Clone NameB6Ng01-054K12
Chromosome2 (Build37)
Map Location 96,014,649 - 96,111,781
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100042843
Downstream geneLOC100043267
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-054K12.bB6Ng01-054K12.g
ACCDH877341DH877342
length1,1241,107
definitionDH877341|Mus musculus domesticus DNA, BAC clone: B6Ng01-054K12, 5' end.DH877342|Mus musculus domesticus DNA, BAC clone: B6Ng01-054K12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(96,110,624 - 96,111,781)(96,014,649 - 96,015,775)
sequence
gaattccattgacttggctgacatcctgaaaattttgaaactatctgcac
caagcatttgactcctttaccttttttccttcattttcactttttcttgc
tcttggtgtggtccccatgtccaatgttcagcctatgcctccaatgggct
cacctaggactcttggagtcactttttctgtccctgaggtatgttctttt
cttgatttttagatttcttctgtcatacagttcttttgccatctaatgtc
agttcaatccattctgttcctattccagctcaaccttgtctctattcctt
tcttttcaactgcatcattgaacctaacccataaaaccagtgttcttcat
ccatacccattttgtttgctttctagactcacttacaaaaaaatatgtct
cttctttcatctttattggaaacatgtgctttgcttcttttctaatttca
tgttctagtctggtatttgagtcagctttgcattttccttccactaatct
aggttttccttgataccttgagttaatctaattgtttaagactgttttaa
cagctgggcagtggtggcacaaacctttaatcccagtactcaggaggcag
aagcaggcagatttctgagtttgacgccagcctgatctacaaagtgagca
ccaggacagccagggctatacagagaaacatatttcaataaaactggact
gccaacgataaagtttctgaatttagtgagctaaatacatctctacactt
atcctgtcataattatactttagtggaagaacaaattaaggcatgtggat
atttcaggaaaaagaggcaacctaatcacattggaaaaagttaccacaaa
agccataaaatatttcacttgcaatccttttaaatacttactcgtgagga
gggaaagtctttactgactgactgaacattcacatgcacacatgaatgta
tgaaaacacactcatgtcatgcactcatgtgagatcagagatgcttctga
gtcagtctcacccccatagataacacgctgagcgatctccttgttttgtg
ctctctagtactcagactctgctgccgatctagaggccctgttcctggta
gtatgctggctataaatgttcctt
gaattctcagtattaagagaaatatcaaagcacagtgaagacataatatt
gtaccctctcatgaagttggtagagacaatcttggggttgtcttcctaat
gaaaggtgcacatgtactgctttcctctccatcttaatggagacataaga
ttcagaacacatccaccatgggccctatacaaacgcatcacactgttcag
tctttctttgcccttgaacattttatttcttctaacaaaagtaccttttt
ctctccagtttctttccaaactctcatttatttttttcaatagagccttc
ttagtgaagccctgtgggatgggtcctctgtgtttcccctgcaatcagtg
cttccttcatttgtgtaactgttgtttgcatacatttctgctctcattgg
tataactcaactctttggcttcctgtcttggtaagtgcaaagccaaaatg
agtacagccaagaagcaaaaaaagagtaaaaaaatgcaaattacctgtag
caataaggtttcattttcctcccagtcccatgcttccagaaataagactc
agactcaaaatatctttacaaataccttggtcaaatagctaggctcgtct
ctgattagatcataatttaaactaacacatttattctaatcgacattctg
tcacgtggctggtaatctatgctcagctaccattcatcacatcttcccag
gtgaatctgcacctggcactattccagaacttcttttctgcctcccagat
gctctaccttctatttcccacttacccataggccattagatttactattg
acaggtgccacatccatacagacataagatgttctctctacaataaattt
aggaaaaagcatgatttttgggtatagttacaaagcaatgccctccataa
acaaagaaacaggtttttcttcagagtttaggcatttttatttaggaaac
tactttcttgtgatatacttctagcagctcagataggactacatgctgaa
aatcttcaatttaggtcaaatttcagaagaaagatgacatcacagtgagg
gcatgtttatcctcaggtcatggaacacatgcatgagttatgtgtcgtct
agaatgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_96110624_96111781
seq2: B6Ng01-054K12.b_42_1165 (reverse)

seq1  AAGGAGCATTTATAGCCCAAGCACTACTACCAAGAGACAGGGGGCTCTTC  50
      ||||| |||||||||||  |||| |||||||| || ||||||    | ||
seq2  AAGGAACATTTATAGCC--AGCA-TACTACCAGGA-ACAGGG----CCTC  42

seq1  TAGAATCTGGCAAGCCAGGAAGTCTGAGGTACTTTAGAGGAGCACCAGAA  100
      ||| ||| ||||   |||  ||||||| ||||  |||| ||||||   ||
seq2  TAG-ATC-GGCA--GCAG--AGTCTGA-GTAC--TAGA-GAGCAC---AA  79

seq1  ACAAAGGAGATTCGGCCTCAGCGTGGTATATCTATGGGGGTGAGAACTGA  150
      |  ||||||| |||  |||||||||   |||||||||||||||| |||||
seq2  AACAAGGAGA-TCG--CTCAGCGTG--TTATCTATGGGGGTGAG-ACTGA  123

seq1  CTCCAGGAAGCAATTCTCTGATCCTCACATGAGTGCCATGACATGAGTGT  200
      |||   ||||||  |||||||| |||||||||||| ||||||||||||||
seq2  CTC--AGAAGCA--TCTCTGAT-CTCACATGAGTG-CATGACATGAGTGT  167

seq1  GTTTTCATACATTCATGTGTGCATGTGAATGTTCAGTCAGTCAGTAAAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCATACATTCATGTGTGCATGTGAATGTTCAGTCAGTCAGTAAAGA  217

seq1  CTTTCCCTCCTCACGAGTAAGTATTTAAAAGGATTGCAAGTGAAATATTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCCTCCTCACGAGTAAGTATTTAAAAGGATTGCAAGTGAAATATTT  267

seq1  TATGGCTTTTGTGGTAACTTTTTCCAATGTGATTAGGTTGCCTCTTTTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TATGGCTTTTGTGGTAACTTTTTCCAATGTGATTAGGTTGCCTCTTTTT-  316

seq1  CCTGAAATATCCACATGCCTTAATTTGTTCTTCCACTAAAGTATAATTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAAATATCCACATGCCTTAATTTGTTCTTCCACTAAAGTATAATTAT  366

seq1  GACAGGATAAGTGTAGAGATGTATTTAGCTCACTAAATTCAGAAACTTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGGATAAGTGTAGAGATGTATTTAGCTCACTAAATTCAGAAACTTTA  416

seq1  TCGTTGGCAGTCCAGTTTTATTGAAATATGTTTCTCTGTATAGCCCTGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTTGGCAGTCCAGTTTTATTGAAATATGTTTCTCTGTATAGCCCTGGC  466

seq1  TGTCCTGGTGCTCACTTTGTAGATCAGGCTGGCGTCAAACTCAGAAATCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTGGTGCTCACTTTGTAGATCAGGCTGGCGTCAAACTCAGAAATCT  516

seq1  GCCTGCTTCTGCCTCCTGAGTACTGGGATTAAAGGTTTGTGCCACCACTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGCTTCTGCCTCCTGAGTACTGGGATTAAAGGTTTGTGCCACCACTG  566

seq1  CCCAGCTGTTAAAACAGTCTTAAACAATTAGATTAACTCAAGGTATCAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCTGTTAAAACAGTCTTAAACAATTAGATTAACTCAAGGTATCAAG  616

seq1  GAAAACCTAGATTAGTGGAAGGAAAATGCAAAGCTGACTCAAATACCAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACCTAGATTAGTGGAAGGAAAATGCAAAGCTGACTCAAATACCAGA  666

seq1  CTAGAACATGAAATTAGAAAAGAAGCAAAGCACATGTTTCCAATAAAGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAACATGAAATTAGAAAAGAAGCAAAGCACATGTTTCCAATAAAGAT  716

seq1  GAAAGAAGAGACATATTTTTTTGTAAGTGAGTCTAGAAAGCAAACAAAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAAGAGACATATTTTTTTGTAAGTGAGTCTAGAAAGCAAACAAAAT  766

seq1  GGGTATGGATGAAGAACACTGGTTTTATGGGTTAGGTTCAATGATGCAGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTATGGATGAAGAACACTGGTTTTATGGGTTAGGTTCAATGATGCAGT  816

seq1  TGAAAAGAAAGGAATAGAGACAAGGTTGAGCTGGAATAGGAACAGAATGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAAGAAAGGAATAGAGACAAGGTTGAGCTGGAATAGGAACAGAATGG  866

seq1  ATTGAACTGACATTAGATGGCAAAAGAACTGTATGACAGAAGAAATCTAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAACTGACATTAGATGGCAAAAGAACTGTATGACAGAAGAAATCTAA  916

seq1  AAATCAAGAAAAGAACATACCTCAGGGACAGAAAAAGTGACTCCAAGAGT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCAAGAAAAGAACATACCTCAGGGACAGAAAAAGTGACTCCAAGAGT  966

seq1  CCTAGGTGAGCCCATTGGAGGCATAGGCTGAACATTGGACATGGGGACCA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGGTGAGCCCATTGGAGGCATAGGCTGAACATTGGACATGGGGACCA  1016

seq1  CACCAAGAGCAAGAAAAAGTGAAAATGAAGGAAAAAAGGTAAAGGAGTCA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAAGAGCAAGAAAAAGTGAAAATGAAGGAAAAAAGGTAAAGGAGTCA  1066

seq1  AATGCTTGGTGCAGATAGTTTCAAAATTTTCAGGATGTCAGCCAAGTCAA  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCTTGGTGCAGATAGTTTCAAAATTTTCAGGATGTCAGCCAAGTCAA  1116

seq1  TGGAATTC  1158
      ||||||||
seq2  TGGAATTC  1124

seq1: chr2_96014649_96015775
seq2: B6Ng01-054K12.g_65_1171

seq1  GAATTCTCAGTATTAAGAGAAATATCAAAGCACAGTGAAGACATAATATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAGTATTAAGAGAAATATCAAAGCACAGTGAAGACATAATATT  50

seq1  GTACCCTCTCATGAAGTTGGTAGAGACAATCTTGGGGTTGTCTTCCTAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCCTCTCATGAAGTTGGTAGAGACAATCTTGGGGTTGTCTTCCTAAT  100

seq1  GAAAGGTGCACATGTACTGCTTTCCTCTCCATCTTAATGGAGACATAAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGTGCACATGTACTGCTTTCCTCTCCATCTTAATGGAGACATAAGA  150

seq1  TTCAGAACACATCCACCATGGGCCCTATACAAACGCATCACACTGTTCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGAACACATCCACCATGGGCCCTATACAAACGCATCACACTGTTCAG  200

seq1  TCTTTCTTTGCCCTTGAACATTTTATTTCTTCTAACAAAAGTACCTTTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTTTGCCCTTGAACATTTTATTTCTTCTAACAAAAGTACCTTTTT  250

seq1  CTCTCCAGTTTCTTTCCAAACTCTCATTTATTTTTTTCAATAGAGCCTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCAGTTTCTTTCCAAACTCTCATTTATTTTTTTCAATAGAGCCTTC  300

seq1  TTAGTGAAGCCCTGTGGGATGGGTCCTCTGTGTTTCCCCTGCAATCAGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTGAAGCCCTGTGGGATGGGTCCTCTGTGTTTCCCCTGCAATCAGTG  350

seq1  CTTCCTTCATTTGTGTAACTGTTGTTTGCATACATTTCTGCTCTCATTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTTCATTTGTGTAACTGTTGTTTGCATACATTTCTGCTCTCATTGG  400

seq1  TATAACTCAACTCTTTGGCTTCCTGTCTTGGTAAGTGCAAAGCCAAAATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAACTCAACTCTTTGGCTTCCTGTCTTGGTAAGTGCAAAGCCAAAATG  450

seq1  AGTACAGCCAAGAAGCAAAAAAAGAGTAAAAAAATGCAAATTACCTGTAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACAGCCAAGAAGCAAAAAAAGAGTAAAAAAATGCAAATTACCTGTAG  500

seq1  CAATAAGGTTTCATTTTCCTCCCAGTCCCATGCTTCCAGAAATAAGACTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAAGGTTTCATTTTCCTCCCAGTCCCATGCTTCCAGAAATAAGACTC  550

seq1  AGACTCAAAATATCTTTACAAATACCTTGGTCAAATAGCTAGGCTCGTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTCAAAATATCTTTACAAATACCTTGGTCAAATAGCTAGGCTCGTCT  600

seq1  CTGATTAGATCATAATTTAAACTAACACATTTATTCTAATCGACATTCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATTAGATCATAATTTAAACTAACACATTTATTCTAATCGACATTCTG  650

seq1  TCACGTGGCTGGTAATCTATGCTCAGCTACCATTCATCACATCTTCCCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACGTGGCTGGTAATCTATGCTCAGCTACCATTCATCACATCTTCCCAG  700

seq1  GTGAATCTGCACCTGGCACTATTCCAGAACTTCTTTTCTGCCTCCCAGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAATCTGCACCTGGCACTATTCCAGAACTTCTTTTCTGCCTCCCAGAT  750

seq1  GCTCTACCTTCTATTTCCCACTTACCCATAGGCCATTAGATTTACTATTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTACCTTCTATTTCCCACTTACCCATAGGCCATTAGATTTACTATTG  800

seq1  ACAGGTGCCACATCCATACAGACATAAGATGTTCTCTCTACAATAAATTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGTGCCACATCCATACAGACATAAGATGTTCTCTCTACAATAAATTT  850

seq1  AGGAAAAAAGCATGATTTTTGGGTATAGTTACAAAGCAATGCCCTCCATA  900
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGG-AAAAAGCATGATTTTTGGGTATAGTTACAAAGCAATGCCCTCCATA  899

seq1  AACAAAGAAAACAGGTTTTTCTTCAGAGTTTAGGCATTTTTATTTAGGGA  950
      ||||||| ||||||||||||||||||||||||||||||||||||||||  
seq2  AACAAAG-AAACAGGTTTTTCTTCAGAGTTTAGGCATTTTTATTTAGG--  946

seq1  AAACTACTTTCCTTGTGGATATACTTCTAAGCAGGCTCAGATAAGGACTA  1000
      |||||||||| ||||| ||||||||||| |||| |||||||| |||||||
seq2  AAACTACTTT-CTTGT-GATATACTTCT-AGCA-GCTCAGAT-AGGACTA  991

seq1  CATTGCTGAAAATCTTCAATTTAAGGTCAAAATTTCAGAAGAAAAGATGA  1050
      || ||||||||||||||||||| ||||| |||||||||||| ||||||||
seq2  CA-TGCTGAAAATCTTCAATTT-AGGTC-AAATTTCAGAAG-AAAGATGA  1037

seq1  CAATCACAGTTGAGGGCATGTTTAT-CTCAGGGTCATGGAACACATGCAT  1099
      | ||||||| ||||||||||||||| |||| |||||||||||||||||||
seq2  C-ATCACAG-TGAGGGCATGTTTATCCTCA-GGTCATGGAACACATGCAT  1084

seq1  GGAAGGTTAATGTGTCGTCTAGGAATGC  1127
      |  ||  | |||||||||||| ||||||
seq2  G--AG--TTATGTGTCGTCTA-GAATGC  1107