BAC Information

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BAC

Clone NameB6Ng01-054L12
Chromosome2 (Build37)
Map Location 12,028,189 - 12,164,197
singlet/doubletdoublet
Overlap geneItga8
Upstream genePrkcq, LOC100040733, LOC100040898, LOC667211, Pfkfb3, Rbm17, Il2ra, Il15ra, Fbxo18, Ankrd16, EG635919, LOC667247
Downstream gene2310047O13Rik, LOC100040837, Pter, C1ql3, Rsu1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-054L12.bB6Ng01-054L12.g
ACCDH877389DH877390
length1,1461,084
definitionDH877389|Mus musculus domesticus DNA, BAC clone: B6Ng01-054L12, 5' end.DH877390|Mus musculus domesticus DNA, BAC clone: B6Ng01-054L12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(12,028,189 - 12,029,349)(12,163,094 - 12,164,197)
sequence
gaattcttatactgttagcctgctgtgaagggcaaatcttcacattgtac
attaaatgagctaaacacgattttctgtctttaatttttaattttattgg
tgacaatgtaaataggtacatgaaaatctacactgtctctatacatgtat
ttaaataagacaagaattctaagatttagatttcagtgacaactagaatg
ctttactgtataaaaatctccaagattagaaaatctgctcatttccctct
gtcttataaaaacagctgtgagaactaggaaagaactcattaaagagaaa
tacagatagactcctcgagaataccaatgtatgacagaagcatcagcaat
gccatgagcattgttgaatactcagttctctgtgaggatgggatgcctat
gaacatgtccccagaggggtcacctgacctcagcttctgtgtgcatgtgt
atgatagccctcctgcacttctacagttgagaccatgggaaaccatgttt
tgcctctgatattcccataccttcttctgtgttggtcttgtcgcccccct
gacatctttagttttccccatatgggttgtctcccacagttcccatttca
ccctaagagttctctgagttctttcaagatcagagatgcactccaaactt
ctgagaagtttgtaatggatccacatcaggaatcataaaaattaaaatgt
agagtgagttgtcccaccaaaaagactaacagtaaagacaaccccagagg
ctggtgtgtgactctttgaggcaagtgtcgtactcctagacactagccct
tatagacataagccagctaccaggacagatttaactaataagcagggcaa
gatgaacagcaatgctgtttgactctgtgcatttcatttgctttccaagg
aactgtagcaactgaagccaaatggctcctttccaggttaaggcacacat
aaaatttactgtctgtgagtttgggtcatctttcaataaagtgtcatgtt
gaactgagacagagttttctgttttgtaaacgtaggatttgggtcagctt
gttatatcagactagtgatcaggatttattaaaaaaaggaactatgcagt
gtaacatgcctcgatacataggccaaaaaaattgcacataacattt
gaattcaaatgcaaaattgtggcacagtgagagtcatttctcatgaataa
gtaagaggtgactatgaacttggcttcttgaacacaaaatctattattgt
attgcagatggcatcttatttcggatatactgttgtggtatcagatgtta
acaatgatgggtaagtttataagaacttcctcccttgcttcatgtcatgt
ccatccataaaagatgttatatatttccttcatcgaccacatccttttgt
acttcctgagaaagatagaggctctcttgttttaacttttggttcaggac
aagaggatgcatgtaataaagaattctgtcatcttattttatgtcttgct
gggagtttccacatctgccacttctaaaaagaggacaattttagtttggt
tttactctgatattatacaagaaatggccatttgccattcaaacagcagc
cagcaaggggtttgctcatctatttctctttgtgcctagaggttctccct
tcatgttatacaattataaaatgttttacacatatatgaatttttccttc
ctatattgctttagccaacctaccagtaaaattcctaaagaacatgaaaa
attaaattatttccagtcctggcagtgaattacagttgagcttgagctaa
actccactactgaattgtggttgtctggaaggaattgtatctaaagtaaa
tgattatacaaaccctttgttttatcaaggcacttgagagatagtttggc
aaagtattaagaaaatattagccaagtgtggctgtaacaagtctttctga
gactaaactgggacactatgagttcaagtctacagtagagtatataggac
agagcagagtgtataacaagggaaggaaggtccaaagaagaaggagcaga
ggggaggagcagagaggagagaggtagtatgagaggaggaggagagaaga
gaaagtcttaagtgagattactgtcattcattacaatgccgttgaagaac
tcctatggaaggcattattctaggcactccagcactcactaagtgaatga
agcagatagacctctgctccacggatacatggtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_12028189_12029349
seq2: B6Ng01-054L12.b_46_1191

seq1  GAATTCTTATACTGTTAGCCTGCTGTGAAGGGCAAATCTTCACATTGTAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTATACTGTTAGCCTGCTGTGAAGGGCAAATCTTCACATTGTAC  50

seq1  ATTAAATGAGCTAAACACGATTTTCTGTCTTTAATTTTTAATTTTATTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAATGAGCTAAACACGATTTTCTGTCTTTAATTTTTAATTTTATTGG  100

seq1  TGACAATGTAAATAGGTACATGAAAATCTACACTGTCTCTATACATGTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAATGTAAATAGGTACATGAAAATCTACACTGTCTCTATACATGTAT  150

seq1  TTAAATAAGACAAGAATTCTAAGATTTAGATTTCAGTGACAACTAGAATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATAAGACAAGAATTCTAAGATTTAGATTTCAGTGACAACTAGAATG  200

seq1  CTTTACTGTATAAAAATCTCCAAGATTAGAAAATCTGCTCATTTCCCTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTACTGTATAAAAATCTCCAAGATTAGAAAATCTGCTCATTTCCCTCT  250

seq1  GTCTTATAAAAACAGCTGTGAGAACTAGGAAAGAACTCATTAAAGAGAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTATAAAAACAGCTGTGAGAACTAGGAAAGAACTCATTAAAGAGAAA  300

seq1  TACAGATAGACTCCTCGAGAATACCAATGTATGACAGAAGCATCAGCAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGATAGACTCCTCGAGAATACCAATGTATGACAGAAGCATCAGCAAT  350

seq1  GCCATGAGCATTGTTGAATACTCAGTTCTCTGTGAGGATGGGATGCCTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATGAGCATTGTTGAATACTCAGTTCTCTGTGAGGATGGGATGCCTAT  400

seq1  GAACATGTCCCCAGAGGGGTCACCTGACCTCAGCTTCTGTGTGCATGTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACATGTCCCCAGAGGGGTCACCTGACCTCAGCTTCTGTGTGCATGTGT  450

seq1  ATGATAGCCCTCCTGCACTTCTACAGTTGAGACCATGGGAAACCATGTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATAGCCCTCCTGCACTTCTACAGTTGAGACCATGGGAAACCATGTTT  500

seq1  TGCCTCTGATATTCCCATACCTTCTTCTGTGTTGGTCTTGTCGCCCCCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCTGATATTCCCATACCTTCTTCTGTGTTGGTCTTGTCGCCCCCCT  550

seq1  GACATCTTTAGTTTTCCCCATATGGGTTGTCTCCCACAGTTCCCATTTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATCTTTAGTTTTCCCCATATGGGTTGTCTCCCACAGTTCCCATTTCA  600

seq1  CCCTAAGAGTTCTCTGAGTTCTTTCAAGATCAGAGATGCACTCCAAACTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTAAGAGTTCTCTGAGTTCTTTCAAGATCAGAGATGCACTCCAAACTT  650

seq1  CTGAGAAGTTTGTAATGGATCCACATCAGGAATCATAAAAATTAAAATGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGAAGTTTGTAATGGATCCACATCAGGAATCATAAAAATTAAAATGT  700

seq1  AGAGTGAGTTGTCCCACCAAAAAGACTAACAGTAAAGACAACCCCAGAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTGAGTTGTCCCACCAAAAAGACTAACAGTAAAGACAACCCCAGAGG  750

seq1  CTGGTGTGTGACTCTTTGAGGCAAGTGTCGTACTCCTAGACACTAGCCCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTGTGTGACTCTTTGAGGCAAGTGTCGTACTCCTAGACACTAGCCCT  800

seq1  TATAGACATAAGCCAGCTACCAGGACAGATTTAACTAATAAGCAGGGCAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGACATAAGCCAGCTACCAGGACAGATTTAACTAATAAGCAGGGCAA  850

seq1  GATGAACAGCAATGCTGTTTGACTCTGTGCATTTCATTTGCTTTCCAAGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAACAGCAATGCTGTTTGACTCTGTGCATTTCATTTGCTTTCCAAGG  900

seq1  AACTGTAGCAACTGAAGCCAAATGGCTCCTTTCCAGGTTAAGGCACCACA  950
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  AACTGTAGCAACTGAAGCCAAATGGCTCCTTTCCAGGTTAAGGCA-CACA  949

seq1  TAAAATTTACTGTCTGTGAGTTTGGGTCATCTTTCAAATAAAGTGTCATT  1000
      ||||||||||||||||||||||||||||||||||| |||||||||||| |
seq2  TAAAATTTACTGTCTGTGAGTTTGGGTCATCTTTC-AATAAAGTGTCA-T  997

seq1  GTTGAAACTGAGACAGAGTTTTCTGTTTTGTAAACGTTAGGATTTTGGTC  1050
      |||| ||||||||||||||||||||||||||||||| |||||||| ||||
seq2  GTTG-AACTGAGACAGAGTTTTCTGTTTTGTAAACG-TAGGATTTGGGTC  1045

seq1  AGCTTGTTATATCAGACTTAGTGATCAGGATATTAATTAAAAAAAAGAAA  1100
      ||||||||||||||||| ||||||||||||| |||  | |||||||| ||
seq2  AGCTTGTTATATCAGAC-TAGTGATCAGGAT-TTA--TTAAAAAAAGGAA  1091

seq1  CTAATGCCAGTGTAAACATGCCTCAGATACATAGGTCTATAAAATATTGC  1150
      || ||| |||||| |||||||||| |||||||||| |   |||| |||||
seq2  CT-ATG-CAGTGT-AACATGCCTC-GATACATAGGCC--AAAAAAATTGC  1135

seq1  ACATAACATTT  1161
      |||||||||||
seq2  ACATAACATTT  1146

seq1: chr2_12163094_12164197
seq2: B6Ng01-054L12.g_68_1151 (reverse)

seq1  AACCATGTAATCCGTGGGAGCAGAGGTCTATCTGCCTCACTCACCTTAGT  50
      |||||||| |||||| ||||||||||||||||||| ||| ||| ||||||
seq2  AACCATGT-ATCCGT-GGAGCAGAGGTCTATCTGCTTCATTCA-CTTAGT  47

seq1  GAGTGCTGTGAGTGCCTGAGAATAATGCCTTCCATAGGAGATTCTTCAAC  100
      |||||||| |||||||| |||||||||||||||||||||| |||||||||
seq2  GAGTGCTG-GAGTGCCT-AGAATAATGCCTTCCATAGGAG-TTCTTCAAC  94

seq1  GGCATTTGTTAAATGAATGACCAGTAAATCTCAACTTAAAGACTTTTCTC  150
      |||| ||||  ||||||||| |||| |||||| |||| ||||| ||||||
seq2  GGCA-TTGT--AATGAATGA-CAGT-AATCTC-ACTT-AAGAC-TTTCTC  136

seq1  TTCTCTTCCTCCTCCTCTTCATACTACCTCTCTTCCTCTTCTTGCTCCTC  200
      ||||| ||||||||||| |||||||||||||| ||||||   ||||||||
seq2  TTCTC-TCCTCCTCCTC-TCATACTACCTCTC-TCCTCT--CTGCTCCTC  181

seq1  CCCTCTGCCTCCTTCTTCTTTGGACCTTCCTTCCCTTGTTATACACTCTG  250
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTG-CTCCTTCTTCTTTGGACCTTCCTTCCCTTGTTATACACTCTG  230

seq1  CTCTGTCCTATATACTCTACTGTAGACTTGAACTCATAGTGTCCCAGTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTCCTATATACTCTACTGTAGACTTGAACTCATAGTGTCCCAGTTT  280

seq1  AGTCTCAGAAAGACTTGTTACAGCCACACTTGGCTAATATTTTCTTAATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTCAGAAAGACTTGTTACAGCCACACTTGGCTAATATTTTCTTAATA  330

seq1  CTTTGCCAAACTATCTCTCAAGTGCCTTGATAAAACAAAGGGTTTGTATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGCCAAACTATCTCTCAAGTGCCTTGATAAAACAAAGGGTTTGTATA  380

seq1  ATCATTTACTTTAGATACAATTCCTTCCAGACAACCACAATTCAGTAGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTTACTTTAGATACAATTCCTTCCAGACAACCACAATTCAGTAGTG  430

seq1  GAGTTTAGCTCAAGCTCAACTGTAATTCACTGCCAGGACTGGAAATAATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTAGCTCAAGCTCAACTGTAATTCACTGCCAGGACTGGAAATAATT  480

seq1  TAATTTTTCATGTTCTTTAGGAATTTTACTGGTAGGTTGGCTAAAGCAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTTTCATGTTCTTTAGGAATTTTACTGGTAGGTTGGCTAAAGCAAT  530

seq1  ATAGGAAGGAAAAATTCATATATGTGTAAAACATTTTATAATTGTATAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGAAGGAAAAATTCATATATGTGTAAAACATTTTATAATTGTATAAC  580

seq1  ATGAAGGGAGAACCTCTAGGCACAAAGAGAAATAGATGAGCAAACCCCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGGGAGAACCTCTAGGCACAAAGAGAAATAGATGAGCAAACCCCTT  630

seq1  GCTGGCTGCTGTTTGAATGGCAAATGGCCATTTCTTGTATAATATCAGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGCTGCTGTTTGAATGGCAAATGGCCATTTCTTGTATAATATCAGAG  680

seq1  TAAAACCAAACTAAAATTGTCCTCTTTTTAGAAGTGGCAGATGTGGAAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACCAAACTAAAATTGTCCTCTTTTTAGAAGTGGCAGATGTGGAAAC  730

seq1  TCCCAGCAAGACATAAAATAAGATGACAGAATTCTTTATTACATGCATCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGCAAGACATAAAATAAGATGACAGAATTCTTTATTACATGCATCC  780

seq1  TCTTGTCCTGAACCAAAAGTTAAAACAAGAGAGCCTCTATCTTTCTCAGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTCCTGAACCAAAAGTTAAAACAAGAGAGCCTCTATCTTTCTCAGG  830

seq1  AAGTACAAAAGGATGTGGTCGATGAAGGAAATATATAACATCTTTTATGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTACAAAAGGATGTGGTCGATGAAGGAAATATATAACATCTTTTATGG  880

seq1  ATGGACATGACATGAAGCAAGGGAGGAAGTTCTTATAAACTTACCCATCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGACATGACATGAAGCAAGGGAGGAAGTTCTTATAAACTTACCCATCA  930

seq1  TTGTTAACATCTGATACCACAACAGTATATCCGAAATAAGATGCCATCTG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTAACATCTGATACCACAACAGTATATCCGAAATAAGATGCCATCTG  980

seq1  CAATACAATAATAGATTTTGTGTTCAAGAAGCCAAGTTCATAGTCACCTC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATACAATAATAGATTTTGTGTTCAAGAAGCCAAGTTCATAGTCACCTC  1030

seq1  TTACTTATTCATGAGAAATGACTCTCACTGTGCCACAATTTTGCATTTGA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTATTCATGAGAAATGACTCTCACTGTGCCACAATTTTGCATTTGA  1080

seq1  ATTC  1104
      ||||
seq2  ATTC  1084