BAC Information

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BAC

Clone NameB6Ng01-054M22
Chromosome2 (Build37)
Map Location 158,839,860 - 158,978,639
singlet/doubletdoublet
Overlap genenone
Upstream gene2610304G08Rik, Tgm2, D630003M21Rik, Bpi, Lbp, 9430008C03Rik, A930034L06Rik, B230339M05Rik, LOC628935, BC054059, LOC545481, Slc32a1, Actr5, Ppp1r16b, 2310007D09Rik, Dhx35, LOC100043891
Downstream geneLOC100043689
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-054M22.bB6Ng01-054M22.g
ACCDH877450DH877451
length1,2181,151
definitionDH877450|Mus musculus domesticus DNA, BAC clone: B6Ng01-054M22, 5' end.DH877451|Mus musculus domesticus DNA, BAC clone: B6Ng01-054M22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(158,839,860 - 158,841,105)(158,977,479 - 158,978,639)
sequence
gaattctagagctgagcggcacgtttccttttctccgtgttaaatagcat
tggggggaataaattagaaccaagtcagatgaactgttttagtgcaggag
ttctcaggacctttattatactgccatgcgtgtatgtcttgaaggtgtca
attaaagatgtaatttcccaaatttgttttatcaggactcgtgtccttgc
gtggttctatcccgatagacccatccttcagtgttctttgtaactcagaa
cctgcctcaccatactggacttcctcattttggaagctttttctctctgt
gtcaacgtgtgtcgtccccccccccccccatgtgcctcatcctcctccag
gctgtgcgtatgtttctgtttctcttcccagtctggagataattcattaa
agcagctcccactccctgcctccctcatctgatacacctttccaccccct
aacacccagactcaaaaacaccatcaatatttcataacctcacggtgaca
aatttattttaatgtggtccaccgagaaccagagattgattggtccctca
gaagcgtgacacgtttcaaagcgggttattcatggcgtgttttagtgcct
acattagtcagagaggagctgagcctggatttatcatccttatgatttct
ccgtatctattctctcccagccaacagcagcggctctctcaatgtttcct
attgattggttctgtatctttaaaatgtgctgtcagggtgggaggggggc
cttgggcttccagtgagggaagtcctgattgctggagtctctctgcacgt
ctgggtgaagccaggggctgatcaccagaggttgattttgattctgaagt
gcattaataacaggaaggtgacagtggagccagggactctggcacagatt
gtcacctgccttgcagtctcactctctgagttgagaaagccatcacaggt
ctctgtacctagggtcctgagcttgagacatcaccaatctttttctttca
gtctgagaagtgacatgcagttgtctaatttgtggattagacgtctttac
tatttaagcacaattatcatgttgcaggtggcatctgagcatttgcgtca
ttggttcggtgtgtccaactacagaacttaggctccttacactggttctg
gaggagagaattggataatccaccttattcagtagactcaggctagtgtt
aagcctgtatgtgggttt
gaattccatggaaagtctttctcttgactgtggtgtcctcaaagacataa
tcctgtgttcccaactgccgggccaggcccttggctattcaaaagaatac
gttaaaaggagaggggcagatgacagtaagtcagcctcgccccgctccat
gaactctgtaacaaaaaggctgagactggcagttccaaggcaatcgtcaa
accccaagaccccaaaataaaacaacgttgacgtctgtaacaatttccta
caccaagaacgcacgagcgcacaggcaccacacaattaaaaaataatgtg
gcacgggatgtgcaaatgtgttcaaacggtttcttgtttactagaccctc
ttgtttagtaaggagcaaaaactcttccatgacaaactcttgcctcctgg
ccagaagcattcacgcaggaaacactccctcctacctcctaagagcacca
acattcaggccttggcagcccgggcagtgcctccctgcccacttgtaatg
aactgtaggaaaggacaccatggcctactttcagggaaatctactgccaa
ttccaaaataaagagggggaaaacatgatggggggagagctttgactctg
gaaattatgacttggtgacaccgccactccttccttctaatctatgaagc
tgtagacacgaccttaattatagctgggcaggtggggccaggccaagaac
agggcttcagctggaatttgtggcaatggaatcactgggttcagagcttc
cagagtccccttgtgtttcaaggctctgggtccctcctttagacctagct
gggaaaatcctcccagaaaggatttttaaatgctaaatgagaaacaggag
tccatgccttgagaagaccttcccctgaccaaaacgaattaaataatcaa
agattagagactctggggagaaagtgattggttccatgtagccggaggat
atctgcagcacagccaccttctcaggccctcatgagcacagatccatcac
gccttatgtcctcctgagtcagtgtcacaaagagagagctatggtttcat
tgtaaacacctccccatgcctggcatgacaatcaccttcttatgcatctt
ttccacgaatcagtaacgtcatggaatacctgactctacaccctcttccc
t
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_158839860_158841105
seq2: B6Ng01-054M22.b_45_1262

seq1  GAATTCTAGAGCTGAGCGGCACGTTTCCTTTTCTCCGTGTTAAATAGCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGAGCTGAGCGGCACGTTTCCTTTTCTCCGTGTTAAATAGCAT  50

seq1  TGGGGGGAATAAATTAGAACCAAGTCAGATGAACTGTTTTAGTGCAGGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGGGAATAAATTAGAACCAAGTCAGATGAACTGTTTTAGTGCAGGAG  100

seq1  TTCTCAGGACCTTTATTATACTGCCATGCGTGTATGTCTTGAAGGTGTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCAGGACCTTTATTATACTGCCATGCGTGTATGTCTTGAAGGTGTCA  150

seq1  ATTAAAGATGTAATTTCCCAAATTTGTTTTATCAGGACTCGTGTCCTTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAGATGTAATTTCCCAAATTTGTTTTATCAGGACTCGTGTCCTTGC  200

seq1  GTGGTTCTATCCCGATAGACCCATCCTTCAGTGTTCTTTGTAACTCAGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTTCTATCCCGATAGACCCATCCTTCAGTGTTCTTTGTAACTCAGAA  250

seq1  CCTGCCTCACCATACTGGACTTCCTCATTTTGGAAGCTTTTTCTCTCTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCCTCACCATACTGGACTTCCTCATTTTGGAAGCTTTTTCTCTCTGT  300

seq1  GTCAACGTGTGTCGTCCCCCCCCCCCCCCATGTGCCTCATCCTCCTCCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAACGTGTGTCGTCCCCCCCCCCCCCCATGTGCCTCATCCTCCTCCAG  350

seq1  GCTGTGCGTATGTTTCTGTTTCTCTTCCCAGTCTGGAGATAATTCATTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGCGTATGTTTCTGTTTCTCTTCCCAGTCTGGAGATAATTCATTAA  400

seq1  AGCAGCTCCCACTCCCTGCCTCCCTCATCTGATACACCTTTCCACCCCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGCTCCCACTCCCTGCCTCCCTCATCTGATACACCTTTCCACCCCCT  450

seq1  AACACCCAGACTCAAAAACACCATCAATATTTCATAACCTCACGGTGACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACCCAGACTCAAAAACACCATCAATATTTCATAACCTCACGGTGACA  500

seq1  AATTTATTTTAATGTGGTCCACCGAGAACCAGAGATTGATTGGTCCCTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTATTTTAATGTGGTCCACCGAGAACCAGAGATTGATTGGTCCCTCA  550

seq1  GAAGCGTGACACGTTTCAAAGCGGGTTATTCATGGCGTGTTTTAGTGCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCGTGACACGTTTCAAAGCGGGTTATTCATGGCGTGTTTTAGTGCCT  600

seq1  ACATTAGTCAGAGAGGAGCTGAGCCTGGATTTATCATCCTTATGATTTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTAGTCAGAGAGGAGCTGAGCCTGGATTTATCATCCTTATGATTTCT  650

seq1  CCGTATCTATTCTCTCCCAGCCAACAGCAGCGGCTCTCTCAATGTTTCCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTATCTATTCTCTCCCAGCCAACAGCAGCGGCTCTCTCAATGTTTCCT  700

seq1  ATTGATTGGTTCTGTATCTTTAAAATGTGCTGTCAGGGTGGGAGGGGGGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGATTGGTTCTGTATCTTTAAAATGTGCTGTCAGGGTGGGAGGGGGGC  750

seq1  CTTGGGCTTCCAGTGAGGGAAGTCCTGATTGCTGGAGTCTCTCTGCAGGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  CTTGGGCTTCCAGTGAGGGAAGTCCTGATTGCTGGAGTCTCTCTGCACGT  800

seq1  CTGGGTGAAGCCAGGGGCTGATCACCAGAGGTTGATTTTGATTCTGAAGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGTGAAGCCAGGGGCTGATCACCAGAGGTTGATTTTGATTCTGAAGT  850

seq1  GCATTAATAACAGGAAGGGTGACAGTGGAGCCAGGGACTCTGGCACAGAT  900
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  GCATTAATAACAGGAA-GGTGACAGTGGAGCCAGGGACTCTGGCACAGAT  899

seq1  TGTCACCTGCCTTGCAGTCTCACTCTCTGAGTTGAGAAAGCCATCACAGG  950
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TGTCACCTGCCTTGCAGTCTCACTCTCTGAGTTGAGAAAGCCATCACA-G  948

seq1  GTCTCTGTACCTAGGGTCCTGAAGCTTGAAGACATCA-CAATC-TTTTCT  998
      ||||||||||||||||||||| |||||| |||||||| ||||| ||||||
seq2  GTCTCTGTACCTAGGGTCCTG-AGCTTG-AGACATCACCAATCTTTTTCT  996

seq1  TTCAGTCTTGAAGAAAGGTGACATGCAGGTGTCAAAATTTGTGGATTTAG  1048
      ||||||||    || | ||||||||||| ||||  |||||||||| ||||
seq2  TTCAGTCT----GAGAAGTGACATGCAGTTGTC-TAATTTGTGGA-TTAG  1040

seq1  GAACGTCTTTACATATTAAAGCACAATTATCATGGTTGCAGGTGGCATCA  1098
        |||||||||| |||| ||||||||||||||| ||||||||||||||| 
seq2  --ACGTCTTTAC-TATTTAAGCACAATTATCAT-GTTGCAGGTGGCATC-  1085

seq1  TGGAGCCATTGCGTACATTGTGTACAGTGTGT-CAACTACAGACTTCAGT  1147
        ||||  |||||| ||||| || | |||||| ||||||||||  | || 
seq2  -TGAGCATTTGCGT-CATTG-GTTCGGTGTGTCCAACTACAGAACTTAGG  1132

seq1  CTCCTTAACAACTGTGCTGGAAGGAGAGTATT-GATA--TCACTTCTATT  1194
      |||||| |||   || |||| ||||||| ||| ||||   ||| | ||||
seq2  CTCCTT-ACACTGGTTCTGG-AGGAGAGAATTGGATAATCCACCT-TATT  1179

seq1  TTACAGTGAGGAAAACTGAGGCGTAGGGAGTTAAGCAGTGGTATGTGGGT  1244
         ||||     | ||| |||| ||  | |||||||    ||||||||||
seq2  ---CAGT-----AGACTCAGGC-TA--GTGTTAAGC--CTGTATGTGGGT  1216

seq1  TT  1246
      ||
seq2  TT  1218

seq1: chr2_158977479_158978639
seq2: B6Ng01-054M22.g_68_1218 (reverse)

seq1  AGGGGAGAGGGTGGTAAGAGTCATGTATTTCATGACTGTTACTTGAATTC  50
      |||| ||||||||   ||||||| ||||| |||||| ||||||   ||||
seq2  AGGGAAGAGGGTG--TAGAGTCAGGTATTCCATGAC-GTTACT--GATTC  45

seq1  GTTGAAAAGATGCATAAGGAGGTGATTGTCATGCCAGGCATTGGGGAGTG  100
      || ||||||||||||||| |||||||||||||||||||||| |||  |||
seq2  GTGGAAAAGATGCATAAGAAGGTGATTGTCATGCCAGGCATGGGGAGGTG  95

seq1  TTTAACAATGAAACCATAGCTCTCTCCTTTGTGACACTTGACTCAGGAGG  150
      ||| ||||||||||||||||||||| ||||||||||| ||||||||||||
seq2  TTT-ACAATGAAACCATAGCTCTCT-CTTTGTGACAC-TGACTCAGGAGG  142

seq1  ACAT-AGGCGTGATGGGATCTGTGCTCATGAGGGCCCTGAGAAGGTGGCT  199
      |||| ||||||||| ||||||||||||||||||| |||||||||||||||
seq2  ACATAAGGCGTGAT-GGATCTGTGCTCATGAGGG-CCTGAGAAGGTGGCT  190

seq1  GTGCTGCAGATATCCTCCCGGCTACATGGAACCAATCACTTTCTCCCCAG  249
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  GTGCTGCAGATATCCT-CCGGCTACATGGAACCAATCACTTTCTCCCCAG  239

seq1  AGTCTCTAATCTTTGATTATTTAATTCGTTTTGGTCAGGGGAAGGTCTTC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTCTAATCTTTGATTATTTAATTCGTTTTGGTCAGGGGAAGGTCTTC  289

seq1  TCAAGGCATGGACTCCTGTTTCTCATTTAGCATTTAAAAATCCTTTCTGG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGGCATGGACTCCTGTTTCTCATTTAGCATTTAAAAATCCTTTCTGG  339

seq1  GAGGATTTTCCCAGCTAGGTCTAAAGGAGGGACCCAGAGCCTTGAAACAC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGATTTTCCCAGCTAGGTCTAAAGGAGGGACCCAGAGCCTTGAAACAC  389

seq1  AAGGGGACTCTGGAAGCTCTGAACCCAGTGATTCCATTGCCACAAATTCC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGGACTCTGGAAGCTCTGAACCCAGTGATTCCATTGCCACAAATTCC  439

seq1  AGCTGAAGCCCTGTTCTTGGCCTGGCCCCACCTGCCCAGCTATAATTAAG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGAAGCCCTGTTCTTGGCCTGGCCCCACCTGCCCAGCTATAATTAAG  489

seq1  GTCGTGTCTACAGCTTCATAGATTAGAAGGAAGGAGTGGCGGTGTCACCA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGTGTCTACAGCTTCATAGATTAGAAGGAAGGAGTGGCGGTGTCACCA  539

seq1  AGTCATAATTTCCAGAGTCAAAGCTCTCCCCCCATCATGTTTTCCCCCTC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCATAATTTCCAGAGTCAAAGCTCTCCCCCCATCATGTTTTCCCCCTC  589

seq1  TTTATTTTGGAATTGGCAGTAGATTTCCCTGAAAGTAGGCCATGGTGTCC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTTGGAATTGGCAGTAGATTTCCCTGAAAGTAGGCCATGGTGTCC  639

seq1  TTTCCTACAGTTCATTACAAGTGGGCAGGGAGGCACTGCCCGGGCTGCCA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTACAGTTCATTACAAGTGGGCAGGGAGGCACTGCCCGGGCTGCCA  689

seq1  AGGCCTGAATGTTGGTGCTCTTAGGAGGTAGGAGGGAGTGTTTCCTGCGT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCTGAATGTTGGTGCTCTTAGGAGGTAGGAGGGAGTGTTTCCTGCGT  739

seq1  GAATGCTTCTGGCCAGGAGGCAAGAGTTTGTCATGGAAGAGTTTTTGCTC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGCTTCTGGCCAGGAGGCAAGAGTTTGTCATGGAAGAGTTTTTGCTC  789

seq1  CTTACTAAACAAGAGGGTCTAGTAAACAAGAAACCGTTTGAACACATTTG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACTAAACAAGAGGGTCTAGTAAACAAGAAACCGTTTGAACACATTTG  839

seq1  CACATCCCGTGCCACATTATTTTTTAATTGTGTGGTGCCTGTGCGCTCGT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATCCCGTGCCACATTATTTTTTAATTGTGTGGTGCCTGTGCGCTCGT  889

seq1  GCGTTCTTGGTGTAGGAAATTGTTACAGACGTCAACGTTGTTTTATTTTG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTTCTTGGTGTAGGAAATTGTTACAGACGTCAACGTTGTTTTATTTTG  939

seq1  GGGTCTTGGGGTTTGACGATTGCCTTGGAACTGCCAGTCTCAGCCTTTTT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCTTGGGGTTTGACGATTGCCTTGGAACTGCCAGTCTCAGCCTTTTT  989

seq1  GTTACAGAGTTCATGGAGCGGGGCGAGGCTGACTTACTGTCATCTGCCCC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACAGAGTTCATGGAGCGGGGCGAGGCTGACTTACTGTCATCTGCCCC  1039

seq1  TCTCCTTTTAACGTATTCTTTTGAATAGCCAAGGGCCTGGCCCGGCAGTT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTTTTAACGTATTCTTTTGAATAGCCAAGGGCCTGGCCCGGCAGTT  1089

seq1  GGGAACACAGGATTATGTCTTTGAGGACACCACAGTCAAGAGAAAGACTT  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAACACAGGATTATGTCTTTGAGGACACCACAGTCAAGAGAAAGACTT  1139

seq1  TCCATGGAATTC  1161
      ||||||||||||
seq2  TCCATGGAATTC  1151