BAC Information

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BAC

Clone NameB6Ng01-055A09
Chromosome2 (Build37)
Map Location 125,030,857 - 125,198,746
singlet/doubletdoublet
Overlap geneSlc12a1, Dut, A530010F05Rik, LOC100043698, Fbn1
Upstream geneLOC100043360, Sema6d, LOC100043367, LOC100043369, Slc24a5, Myef2, LOC100043375
Downstream geneCep152, Shc4, Eid1, 3110001I20Rik, Cops2, Galk2, Fgf7, Dtwd1, Atp8b4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-055A09.bB6Ng01-055A09.g
ACCDH877604DH877605
length1,0111,072
definitionDH877604|Mus musculus domesticus DNA, BAC clone: B6Ng01-055A09, 5' end.DH877605|Mus musculus domesticus DNA, BAC clone: B6Ng01-055A09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(125,030,857 - 125,031,870)(125,197,662 - 125,198,746)
sequence
gaattcttattggaagcttgttgcttatggtgaccaatcacagactacag
tgatgctgtggagggtggccttattgtacgggctctgggtctcagttctg
cctatgtgtgaacagggcacttccagaggcaaacgtttagtaacacaaat
aagaaatgggcttgctttcagatttacgatgtgtactacaggatgaaata
aaccaaacagctttcccttctcttctacgtcctttactctctttagactg
gtgcagagaaggcatcagagccatctgcaagtatgtaggatttccagggg
gaggctcttctctgaacactggaaacggtttttgtttgtttgttgacaag
gtttcaactacggaggcctggctgtcctggaagtcactatatagatgggg
ctgaccataaactcagaaaactgtctgcccctgccttctgactgctgtac
tggagacattttaggccatgggcttagtgtcagacatcactgaagatgtc
tgcccagtggcagagaggagaggctgataatcaaaagattttgcaatcta
taaatgttccattttaaatacatcagattatttagatcacttaataacag
attgatttttttacaagtatgtagagatctcttaacaaaaatatctagct
ggtgggactattttaacaaatcagctttagggtgaatagtctatttacct
ctacacagaatttatttttttaaaggcacaaagaaagaaacaaaacaaaa
caagacactggctcttagctgtattctaaagtgaattttaatagtttcat
gatatcaaaatcctagagatgagtttaatgttcaccccaagtgtgagggt
taaagagaacactggacacattctaatgttgcttcctctttcagtgacgc
ctttgactttgagattggcgtggtcatagtcagaatcagccaaggctttg
acatctctccggttctccaggtacaggtaaatattttcttatcactcaac
agatggtgaat
gaattccccacacagtggagaggggggcttgcttgaacaccgaatttgga
gccaggaaacacatgattcatactttaatttgatgatattgttgaactta
agaacttaaagcaagggcatgatgtaatcaccttgctggcagaatgggag
gcaggagcaagagggaagaggtggtgacatgccagggacttgggccctgt
gcatcctctgccttcatcctggtgcttggaccatccagcacatcttctcc
tgcctaattcagggatgatgggtgatctatggtcacagctcagatgccag
tttccctacagggtcttgagtgggggaagatgtgactcatcttacagtgg
gcaaacagaggggagtttcctcatccaagtgagcccattgaaaagcccta
aggtcactcactgtgtgtgctgtactcttttgtgttgttgtcatttaatg
tttgttttagaatgtgattgactttgaactttttggtggtgcagatataa
acgaatgtgcattagatcctgatatttgcccaaatggaatttgtgaaaat
ctccgtgggacctacaaatgtatatgcaactcgggatatgaagtagacat
aactgggaaaaactgtgtcggtaaggagttcagctcactttctgtgacgt
ttctggtgaagaatcacatgacagattcacttggtaaaagagagccttgc
taagtgtaggaaacgcaagtgttgggagcctttcccgcatggctacagag
ccattccactgaaacagttctcccaactactcattagatttaatcagaga
aagtacagcttgttttcagtaatgatgactctacattggttttaacaagc
accttttccatgtgataacacctttaatgaaggagaatccagaaactaag
taaatcatttggttgggataaacagtcagcctagggcattagtttttttc
tcagcattctttagttgcctagaacagtattttctgaggaaatcttctgt
ctgacaacacacagccttgtgtttcctggagttgggcttttaaaccagat
atgtgtgctctgggtaaggatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_125030857_125031870
seq2: B6Ng01-055A09.b_48_1058

seq1  GAATTCTTATTGGAAGCTTGTTGCTTATGGTGACCAATCACAGACTACAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTATTGGAAGCTTGTTGCTTATGGTGACCAATCACAGACTACAG  50

seq1  TGATGCTGTGGAGGGTGGCCTTATTGTACGGGCTCTGGGTCTCAGTTCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGCTGTGGAGGGTGGCCTTATTGTACGGGCTCTGGGTCTCAGTTCTG  100

seq1  CCTATGTGTGAACAGGGCACTTCCAGAGGCAAACGTTTAGTAACACAAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATGTGTGAACAGGGCACTTCCAGAGGCAAACGTTTAGTAACACAAAT  150

seq1  AAGAAATGGGCTTGCTTTCAGATTTACGATGTGTACTACAGGATGAAATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAATGGGCTTGCTTTCAGATTTACGATGTGTACTACAGGATGAAATA  200

seq1  AACCAAACAGCTTTCCCTTCTCTTCTACGTCCTTTACTCTCTTTAGACTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAAACAGCTTTCCCTTCTCTTCTACGTCCTTTACTCTCTTTAGACTG  250

seq1  GTGCAGAGAAGGCATCAGAGCCATCTGCAAGTATGTAGGATTTCCAGGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAGAGAAGGCATCAGAGCCATCTGCAAGTATGTAGGATTTCCAGGGG  300

seq1  GAGGCTCTTCTCTGAACACTGGAAACGGTTTTTGTTTGTTTGTTGACAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCTCTTCTCTGAACACTGGAAACGGTTTTTGTTTGTTTGTTGACAAG  350

seq1  GTTTCAACTACGGAGGCCTGGCTGTCCTGGAAGTCACTATATAGATGGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCAACTACGGAGGCCTGGCTGTCCTGGAAGTCACTATATAGATGGGG  400

seq1  CTGACCATAAACTCAGAAAACTGTCTGCCCCTGCCTTCTGACTGCTGTAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACCATAAACTCAGAAAACTGTCTGCCCCTGCCTTCTGACTGCTGTAC  450

seq1  TGGAGACATTTTAGGCCATGGGCTTAGTGTCAGACATCACTGAAGATGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGACATTTTAGGCCATGGGCTTAGTGTCAGACATCACTGAAGATGTC  500

seq1  TGCCCAGTGGCAGAGAGGAGAGGCTGATAATCAAAAGATTTTGCAATCTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCAGTGGCAGAGAGGAGAGGCTGATAATCAAAAGATTTTGCAATCTA  550

seq1  TAAATGTTCCATTTTAAATACATCAGATTATTTAGATCACTTAATAACAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGTTCCATTTTAAATACATCAGATTATTTAGATCACTTAATAACAG  600

seq1  ATTGATTTTTTTACAAGTATGTAGAGATCTCTTAACAAAAATATCTAGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGATTTTTTTACAAGTATGTAGAGATCTCTTAACAAAAATATCTAGCT  650

seq1  GGTGGGACTATTTTAACAAATCAGCTTTAGGGTGAATAGTCTATTTACCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGGACTATTTTAACAAATCAGCTTTAGGGTGAATAGTCTATTTACCT  700

seq1  CTACACAGAATTTATTTTTTTAAAGGCACAAAGAAAGAAACAAAACAAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACACAGAATTTATTTTTTTAAAGGCACAAAGAAAGAAACAAAACAAAA  750

seq1  CAAGACACTGGCTCTTAGCTGTATTCTAAAGTGAATTTTAATAGTTTCAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGACACTGGCTCTTAGCTGTATTCTAAAGTGAATTTTAATAGTTTCAT  800

seq1  GATATCAAAATCCTAGAGATGAGTTTAATGTTCACCCCAAGTGTGAGGGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATCAAAATCCTAGAGATGAGTTTAATGTTCACCCCAAGTGTGAGGGT  850

seq1  TAAAGAGAACACTGGACACATTCTAATGTTGCTTCCTCTTTCAGTGACGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGAGAACACTGGACACATTCTAATGTTGCTTCCTCTTTCAGTGACGC  900

seq1  CTTTGACTTTGAGATTGGCGTGGTCATAGTCAGAATCAGCCAAGGCTTTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGACTTTGAGATTGGCGTGGTCATAGTCAGAATCAGCCAAGGCTTTG  950

seq1  ACATCTCTCCGGTTCTCCAGGTACAAGGTAAATATTTTCCTTATCCACTC  1000
      |||||||||||||||||||||||| ||||||||||||| ||||| |||||
seq2  ACATCTCTCCGGTTCTCCAGGTAC-AGGTAAATATTTT-CTTAT-CACTC  997

seq1  AACAGATGGTGAAT  1014
      ||||||||||||||
seq2  AACAGATGGTGAAT  1011

seq1: chr2_125197662_125198746
seq2: B6Ng01-055A09.g_68_1139 (reverse)

seq1  CATCCTTTACCCAAGAGCACACATATCTTGGTTTTAAAAGCCCAACTTCA  50
      ||||| |||||| |||||||||||||||  | ||||||||||||||| ||
seq2  CATCC-TTACCC-AGAGCACACATATCT--GGTTTAAAAGCCCAACTCCA  46

seq1  GGAAACACAAGGCTGTGTGTTGCTCCAGACAGAAGATGTTCTCAGAAAAT  100
      ||||||||||||||||||||||   |||||||||||| | ||||||||||
seq2  GGAAACACAAGGCTGTGTGTTG--TCAGACAGAAGATTTCCTCAGAAAAT  94

seq1  ACTGTTCTAGGCAACTAAAGAATGCTGGAGAAAAAAAACTAATGCCCTAG  150
      |||||||||||||||||||||||||| ||| |||||||||||||||||||
seq2  ACTGTTCTAGGCAACTAAAGAATGCT-GAG-AAAAAAACTAATGCCCTAG  142

seq1  GCTGACTGTTTTATTCCCAACCAAATGATTTACTTAGTTTCTGGATTCTT  200
      |||||||||||   |||||||||||||||||||||||||||||||||| |
seq2  GCTGACTGTTT--ATCCCAACCAAATGATTTACTTAGTTTCTGGATTC-T  189

seq1  CCTTCATTAAAGGTTGTTATCACATGGAAAAGGGTGCTTGTTAAAACCAA  250
      ||||||||||||| ||||||||||||||||| ||||||||||||||||||
seq2  CCTTCATTAAAGG-TGTTATCACATGGAAAA-GGTGCTTGTTAAAACCAA  237

seq1  TGTAGAGTCATCATTACTGAAAACAAGCTGTACTTTCTCTGATTAAATCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGAGTCATCATTACTGAAAACAAGCTGTACTTTCTCTGATTAAATCT  287

seq1  AATGAGTAGTTGGGAGAACTGTTTCAGTGGAATGGCTCTGTAGCCATGCG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGTAGTTGGGAGAACTGTTTCAGTGGAATGGCTCTGTAGCCATGCG  337

seq1  GGAAAGGCTCCCAACACTTGCGTTTCCTACACTTAGCAAGGCTCTCTTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGGCTCCCAACACTTGCGTTTCCTACACTTAGCAAGGCTCTCTTTT  387

seq1  ACCAAGTGAATCTGTCATGTGATTCTTCACCAGAAACGTCACAGAAAGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAGTGAATCTGTCATGTGATTCTTCACCAGAAACGTCACAGAAAGTG  437

seq1  AGCTGAACTCCTTACCGACACAGTTTTTCCCAGTTATGTCTACTTCATAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGAACTCCTTACCGACACAGTTTTTCCCAGTTATGTCTACTTCATAT  487

seq1  CCCGAGTTGCATATACATTTGTAGGTCCCACGGAGATTTTCACAAATTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGAGTTGCATATACATTTGTAGGTCCCACGGAGATTTTCACAAATTCC  537

seq1  ATTTGGGCAAATATCAGGATCTAATGCACATTCGTTTATATCTGCACCAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGGGCAAATATCAGGATCTAATGCACATTCGTTTATATCTGCACCAC  587

seq1  CAAAAAGTTCAAAGTCAATCACATTCTAAAACAAACATTAAATGACAACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAAGTTCAAAGTCAATCACATTCTAAAACAAACATTAAATGACAACA  637

seq1  ACACAAAAGAGTACAGCACACACAGTGAGTGACCTTAGGGCTTTTCAATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAAAAGAGTACAGCACACACAGTGAGTGACCTTAGGGCTTTTCAATG  687

seq1  GGCTCACTTGGATGAGGAAACTCCCCTCTGTTTGCCCACTGTAAGATGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCACTTGGATGAGGAAACTCCCCTCTGTTTGCCCACTGTAAGATGAG  737

seq1  TCACATCTTCCCCCACTCAAGACCCTGTAGGGAAACTGGCATCTGAGCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACATCTTCCCCCACTCAAGACCCTGTAGGGAAACTGGCATCTGAGCTG  787

seq1  TGACCATAGATCACCCATCATCCCTGAATTAGGCAGGAGAAGATGTGCTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCATAGATCACCCATCATCCCTGAATTAGGCAGGAGAAGATGTGCTG  837

seq1  GATGGTCCAAGCACCAGGATGAAGGCAGAGGATGCACAGGGCCCAAGTCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGTCCAAGCACCAGGATGAAGGCAGAGGATGCACAGGGCCCAAGTCC  887

seq1  CTGGCATGTCACCACCTCTTCCCTCTTGCTCCTGCCTCCCATTCTGCCAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCATGTCACCACCTCTTCCCTCTTGCTCCTGCCTCCCATTCTGCCAG  937

seq1  CAAGGTGATTACATCATGCCCTTGCTTTAAGTTCTTAAGTTCAACAATAT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGTGATTACATCATGCCCTTGCTTTAAGTTCTTAAGTTCAACAATAT  987

seq1  CATCAAATTAAAGTATGAATCATGTGTTTCCTGGCTCCAAATTCGGTGTT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAAATTAAAGTATGAATCATGTGTTTCCTGGCTCCAAATTCGGTGTT  1037

seq1  CAAGCAAGCCCCCCTCTCCACTGTGTGGGGAATTC  1085
      |||||||||||||||||||||||||||||||||||
seq2  CAAGCAAGCCCCCCTCTCCACTGTGTGGGGAATTC  1072