BAC Information

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BAC

Clone NameB6Ng01-055D20
Chromosome2 (Build37)
Map Location 35,738,892 - 35,739,872
singlet/doubletsinglet
Overlap geneTtll11
Upstream geneD730039F16Rik, Phf19, Traf1, Hc, AI182371, Rab14, Gsn, Stom, LOC654354, 4930568D16Rik, 4930402F06Rik, Ggta1, LOC666042, LOC100042194, Dab2ip
Downstream geneNdufa8, 1700010A17Rik, Lhx6, Rbm18, LOC100042236, Mrrf, LOC100040493, Ptgs1, Olfr334-ps1, Olfr335, Olfr336-ps1, Olfr337-ps1, Olfr338, LOC675440, Olfr339, Olfr340, Olfr341, Olfr342, Olfr343-ps1, Olfr344, Olfr345, Olfr346, Olfr347, Olfr348, Olfr50, Rpl18p, Olfr3, Olfr349-ps1, Olfr350, Olfr351, Olfr352
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-055D20.g
ACCDH877750
length965
definitionDH877750|Mus musculus domesticus DNA, BAC clone: B6Ng01-055D20, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcatcatttctattattactcagtactgccaatgcaggcgggagga
gtctgagcttatgagcgttctgattcatgtgcttcctccctcttctcgag
gacaggacaaagccacactccttggtcacactcagaatcccagctatgcc
aactgtgtgcctgggaggttcctcttctcagttgctctcataatgcctcc
cctttgtcctgggttctatgtagaatctacctgctttggaggttcacctg
ttggttctgatggtaaaggagcccagagaaatgcttgccaaggtaagaag
agtggacatctcaatcagtcgcaccgaggcaggctccctccattctttac
agcagggctattatggtgagaaggggtaaatgaaatgggagtagactgtg
ccaagttactgtgggaagggggccttctgggcttccataagtcatgtatc
aaacatctgtagttgaatcaaaggcaagcagagtataacccaggcactaa
caggtatcacaggctccataaaatctcccccagattcctccgcgcctgcc
tccctggcacactttataaattctgggattccagaaggctataattccaa
aggaaagtccagttaccagaaagacagacattcaagacaggaaagcaagt
aaagtggcccctctggacttagacgtacctcccccaaactaggacctcct
ctgagaatagctggggacgatgtctgatacgtttcaaacaagacttgggc
aaccaaaataccttgagaaaaggggtttttctcttttccctttctcttga
tgctgaactttcaatgtgcacagaacccatctcaaaaaggaactctggac
atttctacctcactctatgagtctggtgacttggatactcatgaaccttc
tccagcaaattctgggtgagaagaggttaacagggggacgctgggtgtga
atgcctctctccatc
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_35738892_35739872
seq2: B6Ng01-055D20.g_66_1030

seq1  GAATTCATCATTTCTATTATTACTCAGTACTGCCAATGCAAGCGGGAGGA  50
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GAATTCATCATTTCTATTATTACTCAGTACTGCCAATGCAGGCGGGAGGA  50

seq1  GTCTGAGCTTATGAGCGTTCTGATTCATGTGCTTCCTCCCTCTTCTCGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGAGCTTATGAGCGTTCTGATTCATGTGCTTCCTCCCTCTTCTCGAG  100

seq1  GACAGGACAAAGCCACACTCCTTGGTCACACTCAGAATCCCAGCTATGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGGACAAAGCCACACTCCTTGGTCACACTCAGAATCCCAGCTATGCC  150

seq1  AACTGTGTGCCTGGGAGGTTCCTCTTCTCAGTTGCTCTCAGAATGCCTCC  200
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  AACTGTGTGCCTGGGAGGTTCCTCTTCTCAGTTGCTCTCATAATGCCTCC  200

seq1  CCTTTGTCCTGGGTTCTATGTAGAATCTACCTGCTTTGGAGGTTCACCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGTCCTGGGTTCTATGTAGAATCTACCTGCTTTGGAGGTTCACCTG  250

seq1  TTGGTTCTGATGGTAAAGGAGCCCAGAGAAATGCTTGCCAAGGTAAGAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTCTGATGGTAAAGGAGCCCAGAGAAATGCTTGCCAAGGTAAGAAG  300

seq1  AGTGGACATCTCAATCAGTCGCACCGAGGCAGGCTCCCTCCATTCTTTAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGACATCTCAATCAGTCGCACCGAGGCAGGCTCCCTCCATTCTTTAC  350

seq1  AGCAGGGCTATTATGGTGAGAAGGGGTAAATGAAATGGGAGTAGACTGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGGGCTATTATGGTGAGAAGGGGTAAATGAAATGGGAGTAGACTGTG  400

seq1  CCAAGTTACTGTGGGAAGGGGGCCTTCTGGGCTTCCATAAGTCATGTATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGTTACTGTGGGAAGGGGGCCTTCTGGGCTTCCATAAGTCATGTATC  450

seq1  AAACAGCTGTAGTTGAATCAAAGGCAAGCAGAGTATAACCCAGGCACTAA  500
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATCTGTAGTTGAATCAAAGGCAAGCAGAGTATAACCCAGGCACTAA  500

seq1  GAGGTATCACAGGCTCCATAAAATCTCCCCCAGATTCCTCCGCGCCTGCC  550
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTATCACAGGCTCCATAAAATCTCCCCCAGATTCCTCCGCGCCTGCC  550

seq1  TCCCTGGCACACTTTATAAATTCTGGGATTCCAGAAGGCTATAATTCCCA  600
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TCCCTGGCACACTTTATAAATTCTGGGATTCCAGAAGGCTATAATTCCAA  600

seq1  AGGAAAGTCCAGTTACCAGAAAGACAGACATTCAGGACAGGAAAGCAAGT  650
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  AGGAAAGTCCAGTTACCAGAAAGACAGACATTCAAGACAGGAAAGCAAGT  650

seq1  AAAGTGGCCCCTCTGGACTTAGACGTACCTCCCCCAAACTAGGACCTCCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTGGCCCCTCTGGACTTAGACGTACCTCCCCCAAACTAGGACCTCCT  700

seq1  CTGAGAATAGCTGGGGACGATGTCTGATAGGTTTCAAAACAAAGACTTGG  750
      ||||||||||||||||||||||||||||| ||||||||   |||||||||
seq2  CTGAGAATAGCTGGGGACGATGTCTGATACGTTTCAAA--CAAGACTTGG  748

seq1  GCAACCAAAATACCTTGAGAAAAGGGGTTTTTCTCATTTTCCCTTTCTCT  800
      ||||||||||||||||||||||||||||||||||| ||||||||||||| 
seq2  GCAACCAAAATACCTTGAGAAAAGGGGTTTTTCTC-TTTTCCCTTTCTC-  796

seq1  TTGATGCTGAACTTTCAATGTGCAGCAGAACCCATCTCAAAGTAAGGAAC  850
      |||||||||||||||||||||||| ||||||||||||||||  |||||||
seq2  TTGATGCTGAACTTTCAATGTGCA-CAGAACCCATCTCAAA--AAGGAAC  843

seq1  TCTGGTCATTTCTACCTCACCTCTAATGAGTCTTGTGACTTGGAACAACT  900
      ||||| ||||||||||||| |||| |||||||| ||||||||||   |||
seq2  TCTGGACATTTCTACCTCA-CTCT-ATGAGTCTGGTGACTTGGA--TACT  889

seq1  CATGAACCTTCTCCAGCATAGTTTCTGGGTGGGAAGAGGTTACTCAGGGG  950
      |||||||||||||||||| |  ||||||||| ||||||||||  ||||||
seq2  CATGAACCTTCTCCAGCAAA--TTCTGGGTGAGAAGAGGTTA-ACAGGGG  936

seq1  GAGGCATGGGTGTGGAATGCCTTCATCCATC  981
      || || ||||||| ||||||||   ||||||
seq2  GACGC-TGGGTGT-GAATGCCTCTCTCCATC  965