BAC Information

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BAC

Clone NameB6Ng01-055M10
Chromosome2 (Build37)
Map Location 79,426,288 - 79,562,366
singlet/doubletdoublet
Overlap geneSsfa2, Ppp1r1c
Upstream geneLOC100040476, LOC100040494, 4930401B11Rik, Ube2e3, LOC100040526, Itga4, Cerkl, Neurod1
Downstream genePde1a, LOC668005, Prdx6-rs1, Dnajc10, Frzb, Nckap1, LOC624223, Dusp19, LOC672381, Nup35
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-055M10.bB6Ng01-055M10.g
ACCDH878129DH878130
length1,018986
definitionDH878129|Mus musculus domesticus DNA, BAC clone: B6Ng01-055M10, 5' end.DH878130|Mus musculus domesticus DNA, BAC clone: B6Ng01-055M10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(79,426,288 - 79,427,325)(79,561,361 - 79,562,366)
sequence
gaattcctagttcttgagtgtggctataccccccaccccaggacatcggt
tccgggggggggggtcctgaaatgtatattcattggttttgcagaggatc
cttagtgtttttagaattggacttcaagagtctacatgttccaaaagttt
tcccacacagttctttttcctggactttgaaaattagaatcttggattgt
agaaatagcatacttccaatggaaaaattaagctgtttcttaacttcagg
gttttttttttcctccccaaacaacttgaaaatatttggttttgacactc
tataatctctgattgaagacaaatatactcggtgcttataaaatatttta
ttatgtgaagtatttgatcattaaactgtccagaggagtcaaattaaagc
ctccatcagtttatgtgacattcatatgaatacctcatttatggattatg
gaaaggttatttgtggcaaatctatattttatatattattgattttagtt
gtctgaatgttgatgtcctcatgtatccttattctgcagcatcgtcactg
aattacaggcaaaggtgcccaaaagttgtaatatagccaatttatctcat
taatttttgcctgtttttcagttaagctttatggagtaattgctttccca
atagttcagacaacccaccatccacatcaccctgccctctgggagacacc
aggttaccaggtggactcgctgcagggtatttgttacaacttacactcag
tcttccgactcctcacatgaatcttgtccttttggcttattttcccttct
cagacttcactggttaatttcccctgtcctgttctactttaagatgcagg
ggcaaatcaatgctatcaaaaataatgagtgaggactactgtcccatgcc
aataaacacagaactggatctctctgcagatggcttagtactgcttctaa
taattctgattattctagcagatggtatgagatttgactgaacactactt
catggatgggctagaatc
gaattcaaagaaattaaaaaaaaaaaaacccagttcacgtttgtccagac
acaaggtagttaagatagaaaaggaaagccgggcgtggtggcgcacgcct
ttaatcccagcacttgggaggcagaggcaggcagatttctgagtttgagg
ccagcctggtctacaaagtgagttccaggacagccaggactacacataga
aaccctgtctcgaaaaaccaaacaaaaggaaaaaaaaaagaagaagaaaa
gaaaaggacaaaagaaagacaaagaagtttataattattcagtaggatag
tgaaagtttataattattcagtaggatagtggctgtttactatctgatgg
cattggggcactgggccctttaactcctatattcttgttaaaaagtgtat
tatatattcattttccaacatcccttgacaatactttgagatctgatgtg
aataatttaaatacagcaagagaaattaatttgattaccaaaaattaatc
tggtttctgattgtcactaaaactcaagacatctccaaatccccatgacg
taaacctgcttgcgtttgaaactactagtttcctcacctgtaatgtttat
cccaaggcatcttcacaccaaagccacgaagccccacacaggtcctctac
cactaacattcatcttgatggaataactatgtgaacattgttctgtgtga
tgtacatccaagacccatttactgatacccatgaatatgaaatgcaggag
tctaacattatacatcaccactgtagaactttgaaaggtgaaggcaggta
taaccctattacaataaccaaatacggttatgactcttattcctccctca
atggtaaggatctttctaggcgtttggctctttctgggcctctaacttga
ttcttagcttagaacaagagagggcacaactaaggctgaaataccgaaac
tctaaatactgctttccccacctacatatggctgat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_79426288_79427325
seq2: B6Ng01-055M10.b_47_1064

seq1  GAATTCCTAGTTCTTGAGTGTGGCTATACCCCCCACCCCAGGACATCGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTAGTTCTTGAGTGTGGCTATACCCCCCACCCCAGGACATCGGT  50

seq1  TCCGGGGGGGGGGGGTCCTGAAATGTATATTCATTGGTTTTGCAGAGGAT  100
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCC-GGGGGGGGGGGTCCTGAAATGTATATTCATTGGTTTTGCAGAGGAT  99

seq1  CCTTAGTGTTTTTAGAATTGGACTTCAAGAGTCTACATGTTCCAAAAGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAGTGTTTTTAGAATTGGACTTCAAGAGTCTACATGTTCCAAAAGTT  149

seq1  TTCCCACACAGTTCTTTTTCCTGGACTTTGAAAATTAGAATCTTGGATTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCACACAGTTCTTTTTCCTGGACTTTGAAAATTAGAATCTTGGATTG  199

seq1  TAGAAATAGCATACTTCCAATGGAAAAATTAAGCTGTTTCTTAACTTCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAATAGCATACTTCCAATGGAAAAATTAAGCTGTTTCTTAACTTCAG  249

seq1  GGTTTTTTTTTTCCTCCCCAAACAACTTGAAAATATTTGGTTTTGACACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTTTTTTTCCTCCCCAAACAACTTGAAAATATTTGGTTTTGACACT  299

seq1  CTATAATCTCTGATTGAAGACAAATATACTCGGTGCTTATAAAATATTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAATCTCTGATTGAAGACAAATATACTCGGTGCTTATAAAATATTTT  349

seq1  ATTATGTGAAGTATTTGATCATTAAACTGTCCAGAGGAGTCAAATTAAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATGTGAAGTATTTGATCATTAAACTGTCCAGAGGAGTCAAATTAAAG  399

seq1  CCTCCATCAGTTTATGTGACATTCATATGAATACCTCATTTATGGATTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCATCAGTTTATGTGACATTCATATGAATACCTCATTTATGGATTAT  449

seq1  GGAAAGGTTATTTGTGGCAAATCTATATTTTATATATTATTGATTTTAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGGTTATTTGTGGCAAATCTATATTTTATATATTATTGATTTTAGT  499

seq1  TGTCTGAATGTTGATGTCCTCATGTATCCTTATTCTGCAGCATCGTCACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGAATGTTGATGTCCTCATGTATCCTTATTCTGCAGCATCGTCACT  549

seq1  GAATTACAGGCAAAGGTGCCCAAAAGTTGTAATATAGCCAATTTATCTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTACAGGCAAAGGTGCCCAAAAGTTGTAATATAGCCAATTTATCTCA  599

seq1  TTAATTTTTGCCTGTTTTTCAGTTAAGCTTTATGGAGTAATTGCTTTCCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTTTTGCCTGTTTTTCAGTTAAGCTTTATGGAGTAATTGCTTTCCC  649

seq1  AATAGTTCAGACAACCCACCATCCACATCACCCTGCCCTCTGGGAGACAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGTTCAGACAACCCACCATCCACATCACCCTGCCCTCTGGGAGACAC  699

seq1  CAGGTTACCAGGTGGACTCGCTGCAGGGTATTTGTTACAACTTACACTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTTACCAGGTGGACTCGCTGCAGGGTATTTGTTACAACTTACACTCA  749

seq1  GTCTTCCGACTCCTCACATGAATCTTGTCCTTTTGGCTTATTTTCCCTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTCCGACTCCTCACATGAATCTTGTCCTTTTGGCTTATTTTCCCTTC  799

seq1  TCAGACTTCACTGGTTAATTTCCCCTGTCCTGTTCTACTTTAAGATGCAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGACTTCACTGGTTAATTTCCCCTGTCCTGTTCTACTTTAAGATGCAG  849

seq1  GGGCAAATCAATGCTATCAAAAATAATGAGTGAGGGACTACTGTCCCATG  900
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GGGCAAATCAATGCTATCAAAAATAATGAGTGA-GGACTACTGTCCCATG  898

seq1  CCAATAAACACAGAACTGGATCTCTCCTGGCCAGATTGGCTTAGTTAACC  950
      ||||||||||||||||||||||||| |||  |||| |||||||||    |
seq2  CCAATAAACACAGAACTGGATCTCT-CTG--CAGA-TGGCTTAGT---AC  941

seq1  TGCTTCTAATAATTCTGAATTATTTCCTAGCAGGGATTGGGTATGAGATT  1000
      ||||||||||||||||| ||||||  ||||||  |||  ||||||||| |
seq2  TGCTTCTAATAATTCTG-ATTATT--CTAGCA--GAT--GGTATGAGA-T  983

seq1  TTGACTGAAACAACTACTTCATGGATTGGGCTAGAATC  1038
      |||||||||   ||||||||||||| ||||||||||||
seq2  TTGACTGAA--CACTACTTCATGGA-TGGGCTAGAATC  1018

seq1: chr2_79561361_79562366
seq2: B6Ng01-055M10.g_69_1054 (reverse)

seq1  ATCAGCCATTAATGTAGGTGGGGAAAAGCAAGTAATTTTAGGAGTTTTTG  50
      |||||||||  |||||||||||| ||||| ||||  |||| ||||||  |
seq2  ATCAGCCAT--ATGTAGGTGGGG-AAAGC-AGTA--TTTA-GAGTTTCGG  43

seq1  GGTATATTTCAGGCTTTGGTTGTGCCCTCTCTTGTTCTAAAGCTATAGAA  100
          ||||||| || || |||||||||||||||||||| |||||| ||||
seq2  ----TATTTCA-GCCTTAGTTGTGCCCTCTCTTGTTCT-AAGCTA-AGAA  86

seq1  TCAAGGTTAGAGGCCCAGAAAGAGGCAAACGCCTAGGAAGATCCTTACCA  150
      |||| ||||||||||||||||||| ||||||||||| |||||||||||||
seq2  TCAA-GTTAGAGGCCCAGAAAGAGCCAAACGCCTAGAAAGATCCTTACCA  135

seq1  TTGAGGGAGG-ATAGGAGTCATTAAACCGTATTTGGTTATTGTATAAGGG  199
      |||||||||| ||| |||||||  ||||||||||||||||||||  ||||
seq2  TTGAGGGAGGAATAAGAGTCAT--AACCGTATTTGGTTATTGTAATAGGG  183

seq1  TTATACCTGCCTTCACTTTTCAAAGTTTCTACAGTGGTGATGTTATAATT  249
      |||||||||||||||| |||||||| |||||||||||||||| ||||| |
seq2  TTATACCTGCCTTCACCTTTCAAAG-TTCTACAGTGGTGATG-TATAA-T  230

seq1  GTTAGACTCCCTGCATTTCATATTCATGGGTATCAGTTAAATGGGTCTTG  299
      |||||||| ||||||||||||||||||||||||||| |||||||||||||
seq2  GTTAGACT-CCTGCATTTCATATTCATGGGTATCAG-TAAATGGGTCTTG  278

seq1  GATGTACATCACACAGAACAATGTTCACATAGTTATTCCATCAAGATGAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTACATCACACAGAACAATGTTCACATAGTTATTCCATCAAGATGAA  328

seq1  TGTTAGTGGTAGAGGACCTGTGTGGGGCTTCGTGGCTTTGGTGTGAAGAT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAGTGGTAGAGGACCTGTGTGGGGCTTCGTGGCTTTGGTGTGAAGAT  378

seq1  GCCTTGGGATAAACATTACAGGTGAGGAAACTAGTAGTTTCAAACGCAAG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTGGGATAAACATTACAGGTGAGGAAACTAGTAGTTTCAAACGCAAG  428

seq1  CAGGTTTACGTCATGGGGATTTGGAGATGTCTTGAGTTTTAGTGACAATC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTTTACGTCATGGGGATTTGGAGATGTCTTGAGTTTTAGTGACAATC  478

seq1  AGAAACCAGAATTA-TATTAGTAATCAAATTAATTTCTCTTGCTGTATTT  548
      |||||||||| | | | || ||||||||||||||||||||||||||||||
seq2  AGAAACCAGATTAATTTTTGGTAATCAAATTAATTTCTCTTGCTGTATTT  528

seq1  AAATTATTCACATCAGATCTCAAAGTATTGTCAAGGGATGTTGGAAAATG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTATTCACATCAGATCTCAAAGTATTGTCAAGGGATGTTGGAAAATG  578

seq1  AATATATAATACACTTTTTAACAAGAATATAGGAGTTAAAGGGCCCAGTG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATATAATACACTTTTTAACAAGAATATAGGAGTTAAAGGGCCCAGTG  628

seq1  CCCCAATGCCATCAGATAGTAAACAGCCACTATCCTACTGAATAATTATA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAATGCCATCAGATAGTAAACAGCCACTATCCTACTGAATAATTATA  678

seq1  AACTTTCACTATCCTACTGAATAATTATAAACTTCTTTGTCTTTCTTTTG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTCACTATCCTACTGAATAATTATAAACTTCTTTGTCTTTCTTTTG  728

seq1  TCCTTTTCTTTTCTTCTTCTTTTTTTTTTCCTTTTGTTTGGTTTTTCGAG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTTCTTTTCTTCTTCTTTTTTTTTTCCTTTTGTTTGGTTTTTCGAG  778

seq1  ACAGGGTTTCTATGTGTAGTCCTGGCTGTCCTGGAACTCACTTTGTAGAC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGGTTTCTATGTGTAGTCCTGGCTGTCCTGGAACTCACTTTGTAGAC  828

seq1  CAGGCTGGCCTCAAACTCAGAAATCTGCCTGCCTCTGCCTCCCAAGTGCT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTGGCCTCAAACTCAGAAATCTGCCTGCCTCTGCCTCCCAAGTGCT  878

seq1  GGGATTAAAGGCGTGCGCCACCACGCCCGGCTTTCCTTTTCTATCTTAAC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATTAAAGGCGTGCGCCACCACGCCCGGCTTTCCTTTTCTATCTTAAC  928

seq1  TACCTTGTGTCTGGACAAACGTGAACTGGGTTTTTTTTTTTTTAATTTCT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTTGTGTCTGGACAAACGTGAACTGGGTTTTTTTTTTTTTAATTTCT  978

seq1  TTGAATTC  1006
      ||||||||
seq2  TTGAATTC  986