BAC Information

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BAC

Clone NameB6Ng01-055M15
Chromosome7 (Build37)2 (Build37)
Map Location 19,455,827 - 19,456,504112,106,806 - 112,107,991
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEG381852, Ceacam11, Ceacam13, LOC384560, Ceacam12, Igfl3, LOC671190, Mill1, Psg18, LOC546936, Psg28, LOC666831, EG574429, EG232930, Psg25, EG545925, Psg23, Psg21, EG434540, BC050099, LOC666863, Sycp1-ps1, Psg19, Psg17, Mill2
Downstream genePglyrp1, C530028I08Rik, Nova2, Nanos2, P42pop, Irf2bp1, Foxa3, Sympk, Rshl1, Dmwd, Dmpk, Six5, EG243866, Fbxo46, Qpctl, Snrpd2, Gipr, Eml2, Gpr4, Opa3, Vasp, C79127, Rtn2, Fosb, D830036C21Rik, Ercc1, Cd3eap, Ppp1r13l, Ercc2, Klc3, Ckm, Mark4, 4933417E01Rik, Bloc1s3, Trappc6a, Nkpd1, BC024868, Gemin7, Zfp296, Sfrs16, Relb, Clptm1, Apoc2, Apoc4, Apoc1, Apoe, Tomm40, Pvrl2, Bcam, Cblc, Bcl3, Ceacam16
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-055M15.bB6Ng01-055M15.g
ACCDH878139DH878140
length1,0931,169
definitionDH878139|Mus musculus domesticus DNA, BAC clone: B6Ng01-055M15, 5' end.DH878140|Mus musculus domesticus DNA, BAC clone: B6Ng01-055M15, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(19,455,827 - 19,456,504)(112,106,806 - 112,107,991)
sequence
gaattcactggtcttaccacattccccatcatcctgaagcagctgggctg
atagaaagatggaatggccttttgaagacgcagttacagcgccaattagg
tggtaacagcttggaaggctggggcagagttcttcagaaggcagtatatg
ctttgaatcagcgctcgatatatggtacagtttcacccatagccaggatt
catgggtccaggaatcaaggggtggaaaacggaatagttccacttactat
cactcctagtgaccctctaggaaaatttttgcttcctgtccccataactc
taggttctgctggcttagaagttttggctccagagaggggagtgctccta
ccaggagctacaacaaacatttcattgaactggaagctcagacttccccc
tggtcattttgggcttctaatgcccttaaaccaacaggctaaaaaaggaa
taacagtgttaggaggggtgatagatccagattaccatggagaaattgga
ttacctcttcacaatggtggtaagcaagattatgtctggagtgtaggaga
tcccttagggcgcctcttagtactaccatgtcctgtgattaaagtcaatg
ggaaactacaacagcctaatccaagcaggatgacaaagaacgcagatcca
tcaggaatgaaggtatgggtcaatcctccaggaaaagagccaagacctgc
tgaggtgctggctgaaggagaaggaaatacagaatgggtagtagaggaag
gtagttataaataccaattaaggccacgtaaccagttgcagaaacgagga
ttataaagtaatatgaatgcccattgtaaatttactaatgcgtttgcgat
tgtacgagggatagttatatcatgttaggcgtatttacaaccttgttatt
tgtttcatgtgaaaatgagatattattttgtgtcaagtttgacaggggtg
gattgtagtgggcttattcctggttgtcacttgacaatatttgggatgac
tacattcggaattgaagctcaccaatgaccctttatctgaggcttgagat
ccttatctggatcttggtttgaagatcttgagccatagtgggc
gaattctatacacggattcttaattgggcctttgtgggctgtaaatcagg
gtaattgagggtttttggttttttttccccttctatttttgcaatcagaa
gtagctagtgtaggaggaagagtttttgtgagcttttccttttttctttg
tcaaaaaggaaaggggggggaaaatgcatccaccagaagccaccaccaag
atgtcctcagttcggttcatggtgacaccaactaagattgatgacattcc
aggtttgtcagacaccagcccggacctcagctctcggtctagttctcgag
taagatttagctcccgagaaagtgtgccagaaacaagccgtagtgagcct
atgagcgaactgtctggggctactacttctctggcaactgttgccctaga
tccttccagtgaccggacttctaatccccaggatgttacggagggtaagt
agagactcagagagccgggtgtttcaacccttgggttgtccatgttggct
aactaccctaattttataatcataaattaaggcccacgtttctgtgatgc
ttacgagtgtgggaataatagcgacagttagtaggtcactgcagtagtct
ttttggcgtgggaaagtagctggcaagagggcaaggaaatgtctattttg
gtttccttatttctgtcttatttctaattaaaatgactatttttaaaaaa
ttaaatcttttacaacacacaaaaaaagttctaaactaaaattttaatgg
gctggatatgcgctttctagagagctttggggctttgactcctaagtcag
cgtttaaggcaggttgttacatcttgtgtcttactggattcttttgcaga
ttcagttgggtgtcataaaattatttttttgaaatttatgtttttataga
gtatttaaagtaactgaattcactcaagaagtggtactctcttgaaagga
tggaactttcgagagggacttctcgtgcatgattcccacataattttccc
tgctgagcttagatactatttggatatgtatatgaggtttgtagtcagac
ctatagaaggccacttctgtcggtataccacttccagacttgactgactg
acgagcgtactgaatagaagtttcctcttgatattgggaagagggatgtc
gggagagaattactttttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_19455827_19456504
seq2: B6Ng01-055M15.b_461_1136

seq1  TCTAATGCCCTTAAACCAACAGGCTAAAAAAGGAATAACAGTGTTAGGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAATGCCCTTAAACCAACAGGCTAAAAAAGGAATAACAGTGTTAGGAG  50

seq1  GGGTGATAGATCCAGATTACCATGGGGAAATTGGATTACCTCTTCACAAT  100
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  GGGTGATAGATCCAGATTACCATGGAGAAATTGGATTACCTCTTCACAAT  100

seq1  GGTGGTAAGCAAGATTATGTCTGGAGTGCAGGAGATCCCTTAGGGCGTCT  150
      |||||||||||||||||||||||||||| |||||||||||||||||| ||
seq2  GGTGGTAAGCAAGATTATGTCTGGAGTGTAGGAGATCCCTTAGGGCGCCT  150

seq1  CTTAGTACTACCATGTCCTGTGATTAAAGTCAATGGGAAACTACAACAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGTACTACCATGTCCTGTGATTAAAGTCAATGGGAAACTACAACAGC  200

seq1  CTAATCCAAGCAGGATGACAAAGGACGCAGACCCATCAGGAATGAAGGTA  250
      ||||||||||||||||||||||| ||||||| ||||||||||||||||||
seq2  CTAATCCAAGCAGGATGACAAAGAACGCAGATCCATCAGGAATGAAGGTA  250

seq1  TGGGTCAATCCTCCAGGAAAAGAGCCAAGACCTGCTGAGGTGCTGGCTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTCAATCCTCCAGGAAAAGAGCCAAGACCTGCTGAGGTGCTGGCTGA  300

seq1  AGGTGAAGGAAATACAGAATGGGTAGTAGAGGAAGGTAGTTATAAATACC  350
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGAAGGAAATACAGAATGGGTAGTAGAGGAAGGTAGTTATAAATACC  350

seq1  AATTAAGGCCACGTAACCAGTTGCAGAAACGAGGATTATAAAGTAATATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAGGCCACGTAACCAGTTGCAGAAACGAGGATTATAAAGTAATATG  400

seq1  AATGCCCATTGTAAATTTACTAATGCGTTTGCGATTGTACGAGGGATAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCCCATTGTAAATTTACTAATGCGTTTGCGATTGTACGAGGGATAGT  450

seq1  TATATCATGTTAGGCGTATTTACAACCTTGTTA-TTGTTTCATGTGAACA  499
      ||||||||||||||||||||||||||||||||| |||||||||||||| |
seq2  TATATCATGTTAGGCGTATTTACAACCTTGTTATTTGTTTCATGTGAAAA  500

seq1  TGAGATATTA-TTTGTGTCAAG-TTGACAAGGGGTGGATTGTAGTGG--C  545
      |||||||||| ||||||||||| ||||| ||||||||||||||||||   
seq2  TGAGATATTATTTTGTGTCAAGTTTGAC-AGGGGTGGATTGTAGTGGGCT  549

seq1  TATTCCTGGTTGTCAACTTGACAATATTTGGAATGAACTACAATCCGGAA  595
      |||||||||||||| |||||||||||||||| ||| ||||| || |||||
seq2  TATTCCTGGTTGTC-ACTTGACAATATTTGGGATG-ACTAC-ATTCGGAA  596

seq1  TTGGAAGGCTCACCAGTGACCC-TTATCTGGAGGCTTGGAGATCCTTATC  644
      |||  | |||||||| |||||| |||||| ||||||| ||||||||||||
seq2  TTG--AAGCTCACCAATGACCCTTTATCT-GAGGCTT-GAGATCCTTATC  642

seq1  TGGATCTTGGTTTGAAGATCTTGAGCCGTAGTGG  678
      ||||||||||||||||||||||||||| ||||||
seq2  TGGATCTTGGTTTGAAGATCTTGAGCCATAGTGG  676

seq1: chr2_112106806_112107991
seq2: B6Ng01-055M15.g_70_1238

seq1  GAATTCTATACACGGATTCTTAATTGGGCCTTTGTGGGCTGTAAATCAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATACACGGATTCTTAATTGGGCCTTTGTGGGCTGTAAATCAGG  50

seq1  GTAATTGAGGGTTTTTGGTTTTTTTTCCCCTTCTATTTTTGCAATCAGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATTGAGGGTTTTTGGTTTTTTTTCCCCTTCTATTTTTGCAATCAGAA  100

seq1  GTAGCTAGTGTAGGAGGAAGAGTTTTTGTGAGCTTTTCCTTTTTTCTTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCTAGTGTAGGAGGAAGAGTTTTTGTGAGCTTTTCCTTTTTTCTTTG  150

seq1  TCAAAAAGGAAAGGGGGGGGAAAATGCATCCACCAGAAGCCACCACCAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAAAGGAAAGGGGGGGGAAAATGCATCCACCAGAAGCCACCACCAAG  200

seq1  ATGTCCTCAGTTCGGTTCATGGTGACACCAACTAAGATTGATGACATTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCCTCAGTTCGGTTCATGGTGACACCAACTAAGATTGATGACATTCC  250

seq1  AGGTTTGTCAGACACCAGCCCGGACCTCAGCTCTCGGTCTAGTTCTCGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTTGTCAGACACCAGCCCGGACCTCAGCTCTCGGTCTAGTTCTCGAG  300

seq1  TAAGATTTAGCTCCCGAGAAAGTGTGCCAGAAACAAGCCGTAGTGAGCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGATTTAGCTCCCGAGAAAGTGTGCCAGAAACAAGCCGTAGTGAGCCT  350

seq1  ATGAGCGAACTGTCTGGGGCTACTACTTCTCTGGCAACTGTTGCCCTAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGCGAACTGTCTGGGGCTACTACTTCTCTGGCAACTGTTGCCCTAGA  400

seq1  TCCTTCCAGTGACCGGACTTCTAATCCCCAGGATGTTACGGAGGGTAAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCCAGTGACCGGACTTCTAATCCCCAGGATGTTACGGAGGGTAAGT  450

seq1  AGAGACTCAGAGAGCCGGGTGTTTCAACCCTTGGGTTGTCCATGTTGGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACTCAGAGAGCCGGGTGTTTCAACCCTTGGGTTGTCCATGTTGGCT  500

seq1  AACTACCCTAATTTTATAATCATAAATTAAGGCCCACGTTTCTGTGATGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTACCCTAATTTTATAATCATAAATTAAGGCCCACGTTTCTGTGATGC  550

seq1  TTACGAGTGTGGGAATAATAGCGACAGTTAGTAGGTCACTGCAGTAGTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACGAGTGTGGGAATAATAGCGACAGTTAGTAGGTCACTGCAGTAGTCT  600

seq1  TTTTGGCGTGGGAAAGTAGCTGGCAAGAGGGCAAGGAAATGTCTATTTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGCGTGGGAAAGTAGCTGGCAAGAGGGCAAGGAAATGTCTATTTTG  650

seq1  GTTTCCTTATTTCTGTCTTATTTCTAATTAAAATGACTATTTTTAAAAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCCTTATTTCTGTCTTATTTCTAATTAAAATGACTATTTTTAAAAAA  700

seq1  TTAAATCTTTTACAACACACAAAAAAAGTTCTAAACTAAAATTTTAATGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATCTTTTACAACACACAAAAAAAGTTCTAAACTAAAATTTTAATGG  750

seq1  GCTGGATATGCGCTTTCTAGAGAGCTTTGGGGCTTTGACTCCTAAGTCAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGATATGCGCTTTCTAGAGAGCTTTGGGGCTTTGACTCCTAAGTCAG  800

seq1  CGTTTAAGGCAGGTTGTTACATCTTGTGTCTTACTGGATTCTTTTGCAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTTAAGGCAGGTTGTTACATCTTGTGTCTTACTGGATTCTTTTGCAGA  850

seq1  TTCAGTTGGGTGTCATAAAATTA-TTTTTTGAAATTTATGTTTTTATAGA  899
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TTCAGTTGGGTGTCATAAAATTATTTTTTTGAAATTTATGTTTTTATAGA  900

seq1  GTATTTAAAGTAACTGAATTCACTCAAGGAAGTGGTACTCTCTTGAAAGA  949
      ||||||||||||||||||||||||||| ||||||||||||||||||||| 
seq2  GTATTTAAAGTAACTGAATTCACTCAA-GAAGTGGTACTCTCTTGAAAGG  949

seq1  ATGGAACTTTCGAGAGGGACTTCTCGTGCATGATTCCCACATAA-TTTCC  998
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  ATGGAACTTTCGAGAGGGACTTCTCGTGCATGATTCCCACATAATTTTCC  999

seq1  CTGCTGAGCTTTAGATAACTATTTTGTATATTGTATATTGAGTTTTGTAG  1048
      ||||||||| |||||| |||| |||| ||| |||||| |||| |||||||
seq2  CTGCTGAGC-TTAGAT-ACTA-TTTGGATA-TGTATA-TGAGGTTTGTAG  1044

seq1  TCAGAACCTATAGAA-GCCACTTCTGTTCGTATTAACCACTTTCCAGACT  1097
      |||| |||||||||| |||||||||||  ||||  ||||| |||||||||
seq2  TCAG-ACCTATAGAAGGCCACTTCTGTCGGTAT--ACCAC-TTCCAGACT  1090

seq1  TGACCTTGAGCTGACGAGCCTGACTTGAATTAGAAGTTTTCCTTTGATTT  1147
      ||||  ||| ||||||||| | || |||| ||||||||| |  ||||  |
seq2  TGAC--TGA-CTGACGAGCGT-AC-TGAA-TAGAAGTTTCCTCTTGA--T  1132

seq1  AGTGGGAAGAGGTGATGCAAGGAGGAAAGTTACTTTTTC  1186
      | |||||||||| ||||   ||| || | ||||||||||
seq2  ATTGGGAAGAGG-GATGTCGGGA-GAGAATTACTTTTTC  1169