BAC Information

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BAC

Clone NameB6Ng01-057G01
Chromosome2 (Build37)
Map Location 129,976,790 - 129,977,885
singlet/doubletsinglet
Overlap geneTgm6
Upstream geneLOC545461, LOC100043431, Slc20a1, A730036I17Rik, LOC671466, Ckap2l, Il1a, Il1b, OTTMUSG00000015529, LOC668896, F830045P16Rik, Sirpa, Pdyn, Ppia-ps2_1620.1, Stk35, Tgm3, AU015228, LOC100043438
Downstream geneSnrpb, Tmc2, Nol5a, Idh3b, Ebf4, LOC668899, Cpxm1, LOC100043446, 1700020A23Rik, 4933425O20Rik, A930025D01Rik, Vps16, Ptpra, Mrps26, Oxt, Avp, 1700012O15Rik, Ubox5, Fastkd5, Prosapip1, 2600009E05Rik, Itpa, Slc4a11, 4930402H24Rik, LOC100043766, C030014O09Rik, LOC627316, Atrn, LOC100043768, Gfra4, Adam33, Siglec1, LOC100043457, Hspa12b, 1700037H04Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-057G01.bB6Ng01-057G01.g
ACCDH879264DH879265
length1,2781,083
definitionDH879264|Mus musculus domesticus DNA, BAC clone: B6Ng01-057G01, 5' end.DH879265|Mus musculus domesticus DNA, BAC clone: B6Ng01-057G01, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctagcagaaccacgccaatgctcttcaaattattttacaaaacag
aaaatgaaagaacatttcgaatttttttcaaagaagccagaaatattcct
aaaccaagaccatacaaagacccaacccaaaaaaggagaattctagacca
gtatttctaataaacattcaaatattctcaataaaatacttgtaaactag
attcaagaattcatcaaaaagataattcacatagatcatgttgtcttcgt
ctcagcagcacgggtggttcaaaataaggaatcaatgaatgtagtaaccc
acgacaaaaataagccataaaagatagaaaccacatgatcatttcattag
gcaaaatctcattcaacataactcagcattcaatcacgatgttctaggaa
ctttagttctagggaatctaggaatgcagggaacatttcaatatagtagg
caatatacagcatacctacagccaacaacttgcttagtagagaaaagtca
aagcatatcctactaaaataagaaataagaataagaatgtccaccctctc
cttcataactaatattgtagttgaaggttaagataaagcaacaaaaacaa
atgaagaagataaggaagatacaaacaggagagtcagaggtcaagatgtt
ctttctagcagataataagattctacaaatagaagaccttaaagactcct
acagctaattaaatgcattcagcaaagtagcaagatacaaaattatacac
aaaaatcagtaaccttcttatgcatgagtgagaaacatatcaagaaagaa
gtcagggaaacaattgcattcacagtagactcaaaagtatcttggagtca
atctaatcaggaagtgaaagtcttgtacaatgaaaacttgaaggtattga
aaagaaaatggaagagacacgagaaggtagaaagacctcccatgctcatg
gatagtagaattagtattatgaaatggtcatcctaccaaaagcaatttgc
aaatcaatgcactccccatcacaactctatggaattcttcaaagaattac
aatatattttgagcatcatataaaaccctagtggttaagatagccaacac
accaccacacacactgctgagtatcatccccctattcagttactagcact
ctataaacgcctgatttgaactaagtaaatgtacatgatagattgagaac
ccgacattcaagactgattttttcagaggtgctctgttatatagtcattt
agaagaaacgcactctctcacaaagctg
gaattccagatcaatgagatcctgattctttcttctggactctctgggga
ccaggcacaaacatggtacatagtcatacatgcaggcacagtacccttat
atataaataaagaaaacagacaaaggcagcaagcaaacatgaagtaagtg
ggtaaaggctggaaacagtagttgtacgcatgaaggacagacctgctatg
taagtgaagtaagggtgacatggccaaaggctgatgttggcagtaggtgt
gtccctgaagcccagagtccctcctgctaccttcttagtacccttttctt
ggcctggcctagccctgtaaaccaacagcccatcacttactcaatactta
gctgtccttggagaaggccactgccctctaccatcagcacacagtccttt
acgctctccgagagggggttgatcaccaagacttccacagtgactgtcac
tcctaccactgctggccccagcacctggagaagcagcacccacaaattac
ccaacatcctcatccccacctccctgtagcccatgaattctggctggacc
agagaatgtgggtttagccatatccacctctgcatccacacaccctgtta
gactgccacaatcatcccgacccttgagagatgaagctggtgcccaaggc
tcagaccccaggtttggatgccctccaccagctctgccagcaacagggtg
gtagatgtggacaggagttaccttgatggtgatgaagtccctccagggta
atgtccttctccaccaggagctttctcgcccttactgacaaggcacatgg
cagccaacaggatcttcttgtcttctgtcaggtctcctttgtactgagag
taagatattgtgactgggatcttcttttctgaaaggtagagcagttgaag
gcgctaactcaaggctctgagaaggtattgactttactaaagcacacagc
agaaagaccccacttcactggattcaatccaggccagtcagtacctgaga
ctctcaaaaggtcccagactctgacaaactcatattatccagatggaaat
gctgatcaccatctctccatcccacttgaaatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_129976790_129977885
seq2: B6Ng01-057G01.g_70_1152 (reverse)

seq1  AATTCCAAGTGGGATGGAGAGATGGTGTATCAAGCATTTCCATCTTGGAT  50
      |||| |||||||||||||||||||||| ||| |||||||||||| |||||
seq2  AATTTCAAGTGGGATGGAGAGATGGTG-ATC-AGCATTTCCATC-TGGAT  47

seq1  AAATATGAAGTTTGTGCAGATGTCTGGGTACTTTTTGAGAGTCTCATGGT  100
       |||||| ||||||| |||| ||||||| || |||||||||||||| |||
seq2  -AATATG-AGTTTGT-CAGA-GTCTGGG-ACCTTTTGAGAGTCTCA-GGT  91

seq1  ACTGACTGGCCTGGATTTGAATCCAGTTGAATGTGGGGTCTTTCTTGCTG  150
      ||||||||||||||| |||||||||| |||| |||||||||||| |||||
seq2  ACTGACTGGCCTGGA-TTGAATCCAG-TGAA-GTGGGGTCTTTC-TGCTG  137

seq1  TGTGCCTTTAGGTAAGTCAATACCTTCTCAGAGCCTTGAGTTTAGCGCCT  200
      |||| ||||||  ||||||||||||||||||||||||||| |||||||||
seq2  TGTG-CTTTAGTAAAGTCAATACCTTCTCAGAGCCTTGAG-TTAGCGCCT  185

seq1  TCAACTGCTCTACCTTTCAGAAAAGAAGATCCCAGTCACAATATCTTACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACTGCTCTACCTTTCAGAAAAGAAGATCCCAGTCACAATATCTTACT  235

seq1  CTCAGTACAAAGGAGACCTGACAGAAGACAAGAAGATCCTGTTGGCTGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTACAAAGGAGACCTGACAGAAGACAAGAAGATCCTGTTGGCTGCC  285

seq1  ATGTGCCTTGTCAGTAAGGGCGAG-AAGCTCCTGGTGGAGAAGGACATTA  349
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  ATGTGCCTTGTCAGTAAGGGCGAGAAAGCTCCTGGTGGAGAAGGACATTA  335

seq1  CCCTGGA-GGACTTCATCACCATCAAGGTAACTCCTGTCCACATCTACCA  398
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGAGGGACTTCATCACCATCAAGGTAACTCCTGTCCACATCTACCA  385

seq1  CCCTGTTGCTGGCAGAGCTGGTGGAGGGCATCCAAACCTGGGGTCTGAGC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGTTGCTGGCAGAGCTGGTGGAGGGCATCCAAACCTGGGGTCTGAGC  435

seq1  CTTGGGCACCAGCTTCATCTCTCAAGGGTCGGGATGATTGTGGCAGTCTA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGGCACCAGCTTCATCTCTCAAGGGTCGGGATGATTGTGGCAGTCTA  485

seq1  ACAGGGTGTGTGGATGCAGAGGTGGATATGGCTAAACCCACATTCTCTGG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGGTGTGTGGATGCAGAGGTGGATATGGCTAAACCCACATTCTCTGG  535

seq1  TCCAGCCAGAATTCATGGGCTACAGGGAGGTGGGGATGAGGATGTTGGGT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGCCAGAATTCATGGGCTACAGGGAGGTGGGGATGAGGATGTTGGGT  585

seq1  AATTTGTGGGTGCTGCTTCTCCAGGTGCTGGGGCCAGCAGTGGTAGGAGT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTGTGGGTGCTGCTTCTCCAGGTGCTGGGGCCAGCAGTGGTAGGAGT  635

seq1  GACAGTCACTGTGGAAGTCTTGGTGATCAACCCCCTCTCGGAGAGCGTAA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGTCACTGTGGAAGTCTTGGTGATCAACCCCCTCTCGGAGAGCGTAA  685

seq1  AGGACTGTGTGCTGATGGTAGAGGGCAGTGGCCTTCTCCAAGGACAGCTA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACTGTGTGCTGATGGTAGAGGGCAGTGGCCTTCTCCAAGGACAGCTA  735

seq1  AGTATTGAGTAAGTGATGGGCTGTTGGTTTACAGGGCTAGGCCAGGCCAA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATTGAGTAAGTGATGGGCTGTTGGTTTACAGGGCTAGGCCAGGCCAA  785

seq1  GAAAAGGGTACTAAGAAGGTAGCAGGAGGGACTCTGGGCTTCAGGGACAC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGGGTACTAAGAAGGTAGCAGGAGGGACTCTGGGCTTCAGGGACAC  835

seq1  ACCTACTGCCAACATCAGCCTTTGGCCATGTCACCCTTACTTCACTTACA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTACTGCCAACATCAGCCTTTGGCCATGTCACCCTTACTTCACTTACA  885

seq1  TAGCAGGTCTGTCCTTCATGCGTACAACTACTGTTTCCAGCCTTTACCCA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAGGTCTGTCCTTCATGCGTACAACTACTGTTTCCAGCCTTTACCCA  935

seq1  CTTACTTCATGTTTGCTTGCTGCCTTTGTCTGTTTTCTTTATTTATATAT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACTTCATGTTTGCTTGCTGCCTTTGTCTGTTTTCTTTATTTATATAT  985

seq1  AAGGGTACTGTGCCTGCATGTATGACTATGTACCATGTTTGTGCCTGGTC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGTACTGTGCCTGCATGTATGACTATGTACCATGTTTGTGCCTGGTC  1035

seq1  CCCAGAGAGTCCAGAAGAAAGAATCAGGATCTCATTGATCTGGAATTC  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGAGAGTCCAGAAGAAAGAATCAGGATCTCATTGATCTGGAATTC  1083