BAC Information

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BAC

Clone NameB6Ng01-057L11
Chromosome2 (Build37)
Map Location 14,471,099 - 14,574,858
singlet/doubletdoublet
Overlap geneCacnb2, LOC100041164
Upstream geneVim, St8sia6, Ptpla, Stam, 2010003H20Rik, Mrc1, Slc39a12
Downstream geneLOC625335, LOC625342, LOC100041220, Nsun6, Arl5b, LOC633061, LOC667329, LOC227588
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-057L11.bB6Ng01-057L11.g
ACCDH879504DH879505
length1,0871,133
definitionDH879504|Mus musculus domesticus DNA, BAC clone: B6Ng01-057L11, 5' end.DH879505|Mus musculus domesticus DNA, BAC clone: B6Ng01-057L11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(14,471,099 - 14,472,199)(14,573,693 - 14,574,858)
sequence
gaattcttgcttttatgcatgtaaacaaaagattcataaataactaggag
atacttactccctttgttctcatccattaataccaggttcccgaatttct
atctttgatggtaggcttaatctcaagactcttgtcacttccacaagtca
tccatttgactcttgcccatggcattgcctttacaaggggtaatatttac
tcctgatgaccgaggtgactcagctctgaaactttttgtccttgaggaat
tctgtagcttcgactaatgtagcatcatgtgaccactctgctaacgttct
tctcatcatagcaccatctgtaaacacatagctcttctgttgagtggcat
cccaaagtgaagtctaggagaagaatttccagaatgtccatgagaaggag
gtattttaaaaggattcccagccgtggctaggaacactcagtgtttagat
ttcatgtgccttccctgcagcattctttgtgagtcctctctgtctctgct
tctatggaaaagatggaacagaaatgacccgtgagggctcctgatgtggg
gaggaaaacatcctagaccatttcctttttctgtacaaagctttacacat
tatttctatgccttgatttctaaagctaaaatgatctgaacagcatgata
aactgttcttccagagctccctagttcaataccagcaaccacacagtggc
ttataatcaactataatgagatctgattcccttttccagcatgcaagcat
acacgctgacagaacacagtatacataataaataagttattttttaaaaa
aactaagataatctattatatgataaatctttatcctatgaggaataaca
gcatttcagcttgaaaactgaaacgcagaaaagttgacttttctagggtc
acacagctttcaaaacaaagtctgaaacactttaaatagcctttactttg
agcagagagatggctcagtagtagacacattctgctcctccagaaaacac
tcagaggatacagtcactctgtagaccaggctggcctcaagcccatcagt
cttaaagtgattttttttctgtgcaccagccttctaa
gaattccatctctgtgtcttttgtctggaacacaagtctagctggatctg
tttgaacattgtttgttttctgacctggagaatgaatctggaccagtcaa
gtgacccagctcatattaatgaaacacaaagagaacaggtttctagaaac
atccaggcagagaatcttctttaagtagactttagatgtcgttgctgaat
ctgagaatctggattcccatcagccagagggagacagagccaggagaatg
acaaggagggctgctggatcctttgctgggagcgtgtctcacagtctgct
tcatctctggactagcatttctgtcagctaataaaatccccgttgcttat
gccagcttgagctggtctttctgttccatgcaggcaaaagcattcctact
gatataccttaagcatgaactaagaataaaagtctggagtgggttatgag
cataggcagagcatgaatttgggaaggaagggatttgcttattcagtaaa
catttactgagtgatcccaggtgccaggtgcacatgctcatgatgaaagc
acaaaaggagcaacatgccacaggctgatcagtaacgagccctggtcctg
acaaccatcaactgaggtcatgactctctactgcctataagaccaaggga
tcacatagtaccctgagggataaaaaatgaaggaggagtgggatgaggga
gacagaaagaggcagagaagagaagcaagggagggaaaaaggagggggag
aaatgttccatgaagcaacctaataacacagcaagaaacacttaagatag
gatagaattcaatagactctactaaaataatcagaaagacagaatattgg
tcatttaaaaattgttttgaaggatgagtattataagcctttcctaaaca
attctagaagcaagaagggcacgcatattaagatattgaatatagtgtcc
tccttagaaggcagactatttactttagatacagggcaacaaatgacagc
tgacagcaagactgctttaatagcaatgtcctacgatgccaaaatttgtg
ttctgtttgccgtggcactacacagcttcgttgaagggaggaatctggga
cactttgaacacaattataatggtggctacaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_14471099_14472199
seq2: B6Ng01-057L11.b_45_1131

seq1  GAATTCTTGCTTTTATGCATGTAAACAAAAGATTCATAAATAACTAGGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGCTTTTATGCATGTAAACAAAAGATTCATAAATAACTAGGAG  50

seq1  ATACTTACTCCCTTTGTTCTCATCCATTAATACCAGGTTCCCGAATTTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTTACTCCCTTTGTTCTCATCCATTAATACCAGGTTCCCGAATTTCT  100

seq1  ATCTTTGATGGTAGGCTTAATCTCAAGACTCTTGTCACTTCCACAAGTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTGATGGTAGGCTTAATCTCAAGACTCTTGTCACTTCCACAAGTCA  150

seq1  TCCATTTGACTCTTGCCCATGGCATTGCCTTTACAAGGGGTAATATTTAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTTGACTCTTGCCCATGGCATTGCCTTTACAAGGGGTAATATTTAC  200

seq1  TCCTGATGACCGAGGTGACTCAGCTCTGAAACTTTTTGTCCTTGAGGAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGATGACCGAGGTGACTCAGCTCTGAAACTTTTTGTCCTTGAGGAAT  250

seq1  TCTGTAGCTTCGACTAATGTAGCATCATGTGACCACTCTGCTAACGTTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTAGCTTCGACTAATGTAGCATCATGTGACCACTCTGCTAACGTTCT  300

seq1  TCTCATCATAGCACCATCTGTAAACACATAGCTCTTCTGTTGAGTGGCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATCATAGCACCATCTGTAAACACATAGCTCTTCTGTTGAGTGGCAT  350

seq1  CCCAAAGTGAAGTCTAGGAGAAGAATTTCCAGAATGTCCATGAGAAGGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAAGTGAAGTCTAGGAGAAGAATTTCCAGAATGTCCATGAGAAGGAG  400

seq1  GTATTTTAAAAGGATTCCCAGCCGTGGCTAGGAACACTCAGTGTTTAGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTTAAAAGGATTCCCAGCCGTGGCTAGGAACACTCAGTGTTTAGAT  450

seq1  TTCATGTGCCTTCCCTGCAGCATTCTTTGTGAGTCCTCTCTGTCTCTGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGTGCCTTCCCTGCAGCATTCTTTGTGAGTCCTCTCTGTCTCTGCT  500

seq1  TCTATGGAAAAGATGGAACAGAAATGACCCGTGAGGGCTCCTGATGTGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATGGAAAAGATGGAACAGAAATGACCCGTGAGGGCTCCTGATGTGGG  550

seq1  GAGGAAAACATCCTAGACCATTTCCTTTTTCTGTACAAAGCTTTACACAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAAAACATCCTAGACCATTTCCTTTTTCTGTACAAAGCTTTACACAT  600

seq1  TATTTCTATGCCTTGATTTCTAAAGCTAAAATGATCTGAACAGCATGATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCTATGCCTTGATTTCTAAAGCTAAAATGATCTGAACAGCATGATA  650

seq1  AACTGTTCTTCCAGAGCTCCCTAGTTCAATACCAGCAACCACACAGTGGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGTTCTTCCAGAGCTCCCTAGTTCAATACCAGCAACCACACAGTGGC  700

seq1  TTATAATCAACTATAATGAGATCTGATTCCCTTTTCCAGCATGCAAGCAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAATCAACTATAATGAGATCTGATTCCCTTTTCCAGCATGCAAGCAT  750

seq1  ACACGCTGACAGAACACAGTATACATAATAAATAAGTTATTTTTTAAAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACGCTGACAGAACACAGTATACATAATAAATAAGTTATTTTTTAAAAA  800

seq1  AACTAAGATAATCTATTATATGATAAATCTTTATCCTATGAGGAATAACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAAGATAATCTATTATATGATAAATCTTTATCCTATGAGGAATAACA  850

seq1  GCATTTCAGCTTGAAAACTGAAACGCAGAAAAGTTGACTTTTCTAGGGTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTCAGCTTGAAAACTGAAACGCAGAAAAGTTGACTTTTCTAGGGTC  900

seq1  ACACAGCTTTCAAAACAAAAGTCTGAAACACTTTAAATAGCCTTTACTTT  950
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  ACACAGCTTTCAAAAC-AAAGTCTGAAACACTTTAAATAGCCTTTACTTT  949

seq1  GAGCAGGAGAAGATGGCTCAGTAGTTAAGAACACATTCTGCTCCTCCAGA  1000
      ||||| ||| |||||||||||||||  || ||||||||||||||||||||
seq2  GAGCA-GAG-AGATGGCTCAGTAGT--AG-ACACATTCTGCTCCTCCAGA  994

seq1  AAACACCCAGAGGATACAAGTTCACTCTGTAGACCAGGCTGGCCTCAAGC  1050
      |||||| |||||||||||   |||||||||||||||||||||||||||||
seq2  AAACACTCAGAGGATACA--GTCACTCTGTAGACCAGGCTGGCCTCAAGC  1042

seq1  CCATCAGGTTCTTAAAGGTGATTTTTTTTTTTCTGTGCATCAGCCTTCTA  1100
      |||||||  ||||||| ||||   ||||||||||||||| ||||||||||
seq2  CCATCAG--TCTTAAA-GTGA---TTTTTTTTCTGTGCACCAGCCTTCTA  1086

seq1  A  1101
      |
seq2  A  1087

seq1: chr2_14573693_14574858
seq2: B6Ng01-057L11.g_68_1200 (reverse)

seq1  TGTGTAGCCAACCATTTGTAAATTGTGTGTTTCAAAGTGGTCCCAGGATT  50
      ||||||||| ||||||    |||||||   |||||||| |||||||   |
seq2  TGTGTAGCC-ACCATT--ATAATTGTG---TTCAAAGT-GTCCCAG--AT  41

seq1  TCCTTCCCCTCCTATACGAAGCTGTGTAGTTGCACAGGCCAAATACAAGA  100
      ||||  ||||  |  |||||||||||||||  |||  | ||||    |||
seq2  TCCT--CCCT--TCAACGAAGCTGTGTAGTGCCAC--GGCAAA---CAGA  82

seq1  ACAACAAAATATTTGGGCATCTGTGGGACATTGCTTTATTAAAGCAAGTC  150
      || ||||   |||| |||||| || |||||||||  ||||||||| ||||
seq2  AC-ACAA---ATTTTGGCATC-GTAGGACATTGC--TATTAAAGC-AGTC  124

seq1  TTTGCTGTCCAGCTGTCATTTGTTGCCCCTGGTATCTAAAGTAAATTGGT  200
       ||||||| |||||||||||||||||||   |||||||||||||| | ||
seq2  -TTGCTGT-CAGCTGTCATTTGTTGCCC--TGTATCTAAAGTAAA-TAGT  169

seq1  CTGCCTTCTAAGGAGGACACTATAATACAATATCTTTAATATGCGTGCCC  250
      ||||||||||||||||||||||| || ||||||| |||||||||||||||
seq2  CTGCCTTCTAAGGAGGACACTAT-ATTCAATATC-TTAATATGCGTGCCC  217

seq1  TTCTTTGCTTCTAGAATTGTTTAGGAAAGGCTTTATAATACTCATCCTTC  300
      ||| ||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TTC-TTGCTTCTAGAATTGTTTAGGAAAGGC-TTATAATACTCATCCTTC  265

seq1  -AAACAATATTTAAATGACCAATATTCTGTCTTTCTGATTATTTTAGTAG  349
       ||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAATTTTTAAATGACCAATATTCTGTCTTTCTGATTATTTTAGTAG  315

seq1  AGTCTATTG-ATTCTATCCTATCTTAAGTGTTTCTTGCTGTGTTATTAGG  398
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTATTGAATTCTATCCTATCTTAAGTGTTTCTTGCTGTGTTATTAGG  365

seq1  TTGCTTCATGGAACATTTCTCCCCCTCCTTTTTCCCTCCCTTGCTTCTCT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTCATGGAACATTTCTCCCCCTCCTTTTTCCCTCCCTTGCTTCTCT  415

seq1  TCTCTGCCTCTTTCTGTCTCCCTCATCCCACTCCTCCTTCATTTTTTATC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGCCTCTTTCTGTCTCCCTCATCCCACTCCTCCTTCATTTTTTATC  465

seq1  CCTCAGGGTACTATGTGATCCCTTGGTCTTATAGGCAGTAGAGAGTCATG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAGGGTACTATGTGATCCCTTGGTCTTATAGGCAGTAGAGAGTCATG  515

seq1  ACCTCAGTTGATGGTTGTCAGGACCAGGGCTCGTTACTGATCAGCCTGTG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCAGTTGATGGTTGTCAGGACCAGGGCTCGTTACTGATCAGCCTGTG  565

seq1  GCATGTTGCTCCTTTTGTGCTTTCATCATGAGCATGTGCACCTGGCACCT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGTTGCTCCTTTTGTGCTTTCATCATGAGCATGTGCACCTGGCACCT  615

seq1  GGGATCACTCAGTAAATGTTTACTGAATAAGCAAATCCCTTCCTTCCCAA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATCACTCAGTAAATGTTTACTGAATAAGCAAATCCCTTCCTTCCCAA  665

seq1  ATTCATGCTCTGCCTATGCTCATAACCCACTCCAGACTTTTATTCTTAGT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATGCTCTGCCTATGCTCATAACCCACTCCAGACTTTTATTCTTAGT  715

seq1  TCATGCTTAAGGTATATCAGTAGGAATGCTTTTGCCTGCATGGAACAGAA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGCTTAAGGTATATCAGTAGGAATGCTTTTGCCTGCATGGAACAGAA  765

seq1  AGACCAGCTCAAGCTGGCATAAGCAACGGGGATTTTATTAGCTGACAGAA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCAGCTCAAGCTGGCATAAGCAACGGGGATTTTATTAGCTGACAGAA  815

seq1  ATGCTAGTCCAGAGATGAAGCAGACTGTGAGACACGCTCCCAGCAAAGGA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTAGTCCAGAGATGAAGCAGACTGTGAGACACGCTCCCAGCAAAGGA  865

seq1  TCCAGCAGCCCTCCTTGTCATTCTCCTGGCTCTGTCTCCCTCTGGCTGAT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGCAGCCCTCCTTGTCATTCTCCTGGCTCTGTCTCCCTCTGGCTGAT  915

seq1  GGGAATCCAGATTCTCAGATTCAGCAACGACATCTAAAGTCTACTTAAAG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAATCCAGATTCTCAGATTCAGCAACGACATCTAAAGTCTACTTAAAG  965

seq1  AAGATTCTCTGCCTGGATGTTTCTAGAAACCTGTTCTCTTTGTGTTTCAT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTCTCTGCCTGGATGTTTCTAGAAACCTGTTCTCTTTGTGTTTCAT  1015

seq1  TAATATGAGCTGGGTCACTTGACTGGTCCAGATTCATTCTCCAGGTCAGA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATGAGCTGGGTCACTTGACTGGTCCAGATTCATTCTCCAGGTCAGA  1065

seq1  AAACAAACAATGTTCAAACAGATCCAGCTAGACTTGTGTTCCAGACAAAA  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAACAATGTTCAAACAGATCCAGCTAGACTTGTGTTCCAGACAAAA  1115

seq1  GACACAGAGATGGAATTC  1166
      ||||||||||||||||||
seq2  GACACAGAGATGGAATTC  1133