BAC Information

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BAC

Clone NameB6Ng01-057O19
Chromosome2 (Build37)
Map Location 152,720,761 - 152,829,943
singlet/doubletdoublet
Overlap geneTpx2, Mylk2, Fkhl18, Dusp15, Ttll9
Upstream geneAngpt4, 5430432M24Rik, 2310046K01Rik, Scrt2, Srxn1, Tcf15, LOC100043843, Csnk2a1, Tbc1d20, Rbck1, Trib3, LOC628060, Nrsn2, Sox12, Zcchc3, 6820408C15Rik, EG629114, LOC668930, 9230107O10Rik, 9230002F21Rik, EG654457, OTTMUSG00000015852, Defb29, 4930525K10Rik, Defb19, OTTMUSG00000015859, Defb36, OTTMUSG00000015862, Rem1, H13, Mcts2, Id1, LOC629170, Cox4i2, Bcl2l1
Downstream genePdrg1, Xkr7, BC020535, Hck, Tm9sf4, Tspyl3, Plagl2, Pofut1, Kif3b, 2500004C02Rik, Asxl1, 8430427H17Rik, Commd7, 7530422B04Rik, Dnmt3b, LOC668932, Mapre1, EG329541, LOC100043869, Spag4l, Bpil1, Bpil3, Rya3, LOC100043870, Gm1006, EG545477
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-057O19.bB6Ng01-057O19.g
ACCDH879642DH879643
length932950
definitionDH879642|Mus musculus domesticus DNA, BAC clone: B6Ng01-057O19, 5' end.DH879643|Mus musculus domesticus DNA, BAC clone: B6Ng01-057O19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(152,720,761 - 152,721,417)(152,828,997 - 152,829,943)
sequence
gaattcttacctaccctgtgccagtggatgtctgtggagtgtgtcagatg
ccctgggattggagttacagatggttgtattgggaaaccctgctcataat
gtcagcttttgacattaccagaaagcctagactgaggtcggtgcaaaatg
gtggattcctttcgtcagcaaggtttccttttctctacctgagggatccc
ggaccacacacctgtggaatatcacatagccttggttagatttcaggtcc
gacttcttttctacttacacgaacccgttggagtagcaccggagactgct
ggatgtcggagtgcctctgtgtgtgtgatggtttgtatattcttggacca
gggagaggcaccatttggaggtgtggccttgtttgaataggtgtggcctg
gttggagtaggtgtgtcactgtaggttgacttcctagttgcctggaagtc
agtcttccactagtagcctttggatgaagatgtagaactctcagctctgc
ctggatactgccctgttcccaccttgataatggactgaacctctgagcct
gtaagccagccccaattaaatgttgtttataagacttgccttggtcatgg
tgtctgttcacagcagtaaaaccctaactaagacagtgtgctaacaaggc
atctcagtaccctagccttcagccagtgaccttttgcccaccctgggtat
tcctacccacttcccccaaacagtataacacttgattcaccccaagaaaa
ttgatctgtcttcccgatactgatcccagaatgtccctttcgggccaacg
actccagggaggaccaaagctgtgagaccccgtgtgggtctcagaactaa
tcctggtcctctgccagagacattcattttgtactagaagtcctcacatt
gatgtgacattaacctattttatattcgtttt
gaattcactaaggggcttgggcctctttctaagtaagcctatgcctgctg
ctcagtgattcttctacttccagggagccagaaggaaaagccaacttccg
tggtttccaccggagaggaggctcgccacagggttatttagtaaaaaact
gagatcacaccaaatgcccaacggtaggaagtcggcttgataaatgctgg
cacacacgtgggctgaaatgctctgtagctgtgctgtgctgtaaccactc
aggaaactaaaggccggaattcaggagttagggttcaggctggctggccc
atctctacaacagccttctgtggtctgtgcaagctttggagacaatttcc
tggtttgaggggcaatcacagaagctaccacatgccgtggtattgcgcat
gaacaacccgcctaacacatgcttcccatgggaggtcctctgtattcctg
aatggagggagggaagccacgtggaaagtgggactccaaacgccagtctg
gtgccagatttacaaaaaatatgaatatatgcattttttaaaactggaag
gaaacaccagattgttaatgatggttgtgtctggatgtgttttaaatttt
ccttctttagtttttcaaatattctacaatgagtgtgaatttctataatc
ggggaattcttttcacatttcacatactaccttgcagagtcctacagcct
ttaactttttctcatgataatttgttctccacctgagtcttgaaatcccc
ctccagaaactcagaaatttctcactataacaggcagggtcctaccagga
gtatccaaccgtttgatgttgtgaccagacattgtcatctacaaagttca
cacttgagaagtgagcaaaaagtttcacacacactcactgaataaaaaat
ctcctaacttttttaagtgagtatacgattttggtgtggggcacattcat

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_152720761_152721417
seq2: B6Ng01-057O19.b_329_977

seq1  TAGCACCGGAGACTGCTGGATGTCGGAGTGCCTCTGTGTGTGTGATGGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCACCGGAGACTGCTGGATGTCGGAGTGCCTCTGTGTGTGTGATGGTT  50

seq1  TGTATATTCTTGGACCAGGGAGAGGCACCATTTGGAGGTGTGGCCTTGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATATTCTTGGACCAGGGAGAGGCACCATTTGGAGGTGTGGCCTTGTT  100

seq1  TGAATAGGTGTGGCCTGGTTGGAGTAGGTGTGTCACTGTAGGTTGACTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATAGGTGTGGCCTGGTTGGAGTAGGTGTGTCACTGTAGGTTGACTTC  150

seq1  CTAGTTGCCTGGAAGTCAGTCTTCCACTAGTAGCCTTTGGATGAAGATGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTTGCCTGGAAGTCAGTCTTCCACTAGTAGCCTTTGGATGAAGATGT  200

seq1  AGAACTCTCAGCTCTGCCTGGATACTGCCCTGTTCCCACCTTGATAATGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTCTCAGCTCTGCCTGGATACTGCCCTGTTCCCACCTTGATAATGG  250

seq1  ACTGAACCTCTGAGCCTGTAAGCCAGCCCCAATTAAATGTTGTTTATAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAACCTCTGAGCCTGTAAGCCAGCCCCAATTAAATGTTGTTTATAAG  300

seq1  ACTTGCCTTGGTCATGGTGTCTGTTCACAGCAGTAAAACCCTAACTAAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGCCTTGGTCATGGTGTCTGTTCACAGCAGTAAAACCCTAACTAAGA  350

seq1  CAGTGTGCTAACAAGGCATCTCAGTACCCTAGCCTTCAGCCAGTGACC-T  399
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  CAGTGTGCTAACAAGGCATCTCAGTACCCTAGCCTTCAGCCAGTGACCTT  400

seq1  TTGCCCACCCTGGGTATTCCTACCCACTTCCCCCAAACAGTATAACACTT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCCACCCTGGGTATTCCTACCCACTTCCCCCAAACAGTATAACACTT  450

seq1  GATTCACCCCAAAGAAAATTGATCTGTCTTCCCGATACTGATCCCAGAAT  499
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  GATTCACCCC-AAGAAAATTGATCTGTCTTCCCGATACTGATCCCAGAAT  499

seq1  GTCCCTTTCGGGCCAACGACTCCAGGGAGGACCAAAGCTGTGAGACCCCG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCTTTCGGGCCAACGACTCCAGGGAGGACCAAAGCTGTGAGACCCCG  549

seq1  TGTGGGTTCTCAGAACTAATCCTGGGTCCTCTGCAAGAGACATTCATTTT  599
      |||||| |||||||||||||||| |||||||||| |||||||||||||||
seq2  TGTGGG-TCTCAGAACTAATCCT-GGTCCTCTGCCAGAGACATTCATTTT  597

seq1  GTGACTAGGAAGTCCTCAGCATTGTATGTGACATTAAGCCTATTTTTATA  649
      || |||| |||||||||| ||||| |||||||||||| |||| |||||||
seq2  GT-ACTA-GAAGTCCTCA-CATTG-ATGTGACATTAA-CCTA-TTTTATA  641

seq1  TTCGTTTT  657
      ||||||||
seq2  TTCGTTTT  649

seq1: chr2_152828997_152829943
seq2: B6Ng01-057O19.g_70_1019 (reverse)

seq1  ATGAATGTGGCCCAACACAAAATCGTATACTCACTTAAAACAGTTATGAG  50
      ||||||||| ||||   ||||||||||||||||||||||| ||||| |||
seq2  ATGAATGTGCCCCACACCAAAATCGTATACTCACTTAAAAAAGTTAGGAG  50

seq1  ATTTTTTATTCAGTGTGTGTGTGTGTAACTTTTTGCTCACTTCTCAAGTG  100
      ||||||||||||||| ||||||||| ||||||||||||||||||||||||
seq2  ATTTTTTATTCAGTGAGTGTGTGTGAAACTTTTTGCTCACTTCTCAAGTG  100

seq1  TGAACTTTGTAGATGACAATGTCTGGTCACAACATCAAACGGTTGGATAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTTTGTAGATGACAATGTCTGGTCACAACATCAAACGGTTGGATAC  150

seq1  TCCTGGTAGGACCCTGCCTGTTATAGTGAGAAATTTCTGAGTTTCTGGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGTAGGACCCTGCCTGTTATAGTGAGAAATTTCTGAGTTTCTGGAG  200

seq1  GGGGATTTCAAGACTCAGGTGGAGAACAAATTATCATGAG-AAAAGTTAA  249
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GGGGATTTCAAGACTCAGGTGGAGAACAAATTATCATGAGAAAAAGTTAA  250

seq1  AGGCTGTAGGACTCTGCAAGGTAGTATGTGAAATGTG-AAAGAATTCCCC  298
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  AGGCTGTAGGACTCTGCAAGGTAGTATGTGAAATGTGAAAAGAATTCCCC  300

seq1  GATTATAGAAATTCACACTCATTGTAGAATATTTG-AAAACTAAAGAAGG  347
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  GATTATAGAAATTCACACTCATTGTAGAATATTTGAAAAACTAAAGAAGG  350

seq1  AAAATTTAAAACACATCCAGACACAACCATCATTAACAATCTGGTGTTTC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTTAAAACACATCCAGACACAACCATCATTAACAATCTGGTGTTTC  400

seq1  CTTCCAGTTTTAAAAAATGCATATATTCATATTTTTTGTAAATCTGGCAC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCAGTTTTAAAAAATGCATATATTCATATTTTTTGTAAATCTGGCAC  450

seq1  CAGACTGGCGTTTGGAGTCCCACTTTCCACGTGGCTTCCCTCCCTCCATT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACTGGCGTTTGGAGTCCCACTTTCCACGTGGCTTCCCTCCCTCCATT  500

seq1  CAGGAATACAGAGGACCTCCCATGGGAAGCATGTGTTAGGCGGGTTGTTC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAATACAGAGGACCTCCCATGGGAAGCATGTGTTAGGCGGGTTGTTC  550

seq1  ATGCGCAATACCACGGCATGTGGTAGCTTCTGTGATTGCCCCTCAAACCA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCGCAATACCACGGCATGTGGTAGCTTCTGTGATTGCCCCTCAAACCA  600

seq1  GGAAATTGTCTCCAAAGCTTGCACAGACCACAGAAGGCTGTTGTAGAGAT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATTGTCTCCAAAGCTTGCACAGACCACAGAAGGCTGTTGTAGAGAT  650

seq1  GGGCCAGCCAGCCTGAACCCTAACTCCTGAATTCCGGCCTTTAGTTTCCT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCAGCCAGCCTGAACCCTAACTCCTGAATTCCGGCCTTTAGTTTCCT  700

seq1  GAGTGGTTACAGCACAGCACAGCTACAGAGCATTTCAGCCCACGTGTGTG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGGTTACAGCACAGCACAGCTACAGAGCATTTCAGCCCACGTGTGTG  750

seq1  CCAGCATTTATCAAGCCGACTTCCTACCGTTGGGCATTTGGTGTGATCTC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCATTTATCAAGCCGACTTCCTACCGTTGGGCATTTGGTGTGATCTC  800

seq1  AGTTTTTTACTAAATAACCCTGTGGCGAGCCTCCTCTCCGGTGGAAACCA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTTTACTAAATAACCCTGTGGCGAGCCTCCTCTCCGGTGGAAACCA  850

seq1  CGGAAGTTGGCTTTTCCTTCTGGCTCCCTGGAAGTAGAAGAATCACTGAG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGAAGTTGGCTTTTCCTTCTGGCTCCCTGGAAGTAGAAGAATCACTGAG  900

seq1  CAGCAGGCATAGGCTTACTTAGAAAGAGGCCCAAGCCCCTTAGTGAATTC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGGCATAGGCTTACTTAGAAAGAGGCCCAAGCCCCTTAGTGAATTC  950