BAC Information

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BAC

Clone NameB6Ng01-058A24
Chromosome2 (Build37)
Map Location 92,193,134 - 92,329,149
singlet/doubletdoublet
Overlap genePhf21a, Gyltl1b, Pex16, 1700029I15Rik, Mapk8ip1, Cry2, Slc35c1, LOC100042775
Upstream gene1110051M20Rik, Lrp4, LOC619941, Ckap5, F2, Zfp408, Arhgap1, D2Ertd391e, LOC100043179, D230010M03Rik, D030051N19Rik, Chrm4, Mdk, Dgkz, Creb3l1
Downstream geneLOC100043205, Chst1, Syt13, LOC100042784, Trp53i11, C230071H18Rik, Tspan18, LOC100042789, LOC639658, Cd82
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-058A24.bB6Ng01-058A24.g
ACCDH879745DH879746
length1,1941,039
definitionDH879745|Mus musculus domesticus DNA, BAC clone: B6Ng01-058A24, 5' end.DH879746|Mus musculus domesticus DNA, BAC clone: B6Ng01-058A24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(92,328,000 - 92,329,149)(92,193,134 - 92,194,181)
sequence
acaggggggcgggcccccttgctggagctgatggctcggatccgcgtaat
tggttcctgtgttggatcagtcctggcagtgtaggacactcttggtagca
cccctcctgaggccctgtactcctacttggcctaggacgccccctatagg
ccaaggagaggccctcctcacagcctggttggctgaggaaatccaacata
ctccttatataatgcaacctctgaggtcggtaggtgccaggacagtggta
gggttctctcctctggctttgcctggcaaaaggaagataaatggttacta
ctaactgttgtcttccaggagaaactgtgccgttagacctgaatgggggg
agggagccatcatgctccagcaggggggccagcctctgtatgggaggcaa
gatggacagacaaaggcgcaggtccagcgaagagcgcctggatcaagctg
cacccgaaacgctcatcgcttctggactttttcgacttttctagtttgag
tcagagaagtttcctctttctgctcccgagactgaaagagccctgtctca
ggtagagctaaatgcccagagactgagccatcaacaggcttaggaccatc
accatacctcagctctgtttccgtgctgccttctctcttaggctggctct
gctttcccatccaaagataacgtctaaaagtccgaatccagccgagccac
ttccgtgggaggaatagttctttactggtcagcgtttatcacaccagtgc
tgtgtaacaagcagttctgaaagctcagtcactgactacaatttttcttt
tcactctcataaatatgtgggtcatgggtcatgctgaactccaagcttca
gctggccttagtgaactctccgtcctgagcctcccaggggaagctgccat
ggccaatggggcaaacgcccctcaaagtggcagtcagggggaaatcacgc
atggtgcttccttcgggtctgactggcttgtcactgctggacagttttca
tagacagaagcagacagacgcagagctctggtggctcagaggggagccta
tctcccactgcaggacagcaggaggaccgaaggctttgtccacagacaat
gttatctttcctcaaagaaattccttgaactagttcctcagccggtagtc
agggggcctaccctcctgttgtggcctggcaaaagaaaggtcgg
gaattcaggaggcagtgacaggcagatctctagtccagcctggtctacag
agtgagttctagaatagggctacacagagaaaccctgtctcaaaaaataa
aaaatgaaaatccaaaaacaaaaacaaaaaaggaatctttacctctaaga
ataacagtattctgttgtatagctaccatgtggttataatattgtgggaa
tttaacattgcttacatgtcagcgtgtaatactaagttcatattccaatg
ttcccacttaacccagtaattgcatttgtctgaggtcactcttggcattt
attatcctggttgtgtcaccttactctcctttattctgaaatggtttctt
aggcattcctttcttaaattacagtttgttcatttagagcgtgtatgtct
gtgtgtacgtccttgccatggcacatgtgtagagatcaaagggcagcttt
tgggagtcagttctctcctcccactgtgtgggtctcaggaactgaactcg
gctgtcaggattagtgacaagtgtgtgcgagtgatgtcaccaggcccttt
gtgtctgtgtgtctgtccagtggtggcgtcctcttcactgcctcggttat
tctgctgagtttgccccactgcactgtgccagtccccttcagggtagact
gaagcatagggttttgaatgagcctggagtcaggggtgacaggctcctca
gtgtctcacagcaggaggtatgtgctgtcagcctcttgctaactttcatc
tcttgagatcatttccattgaatttttttcacttgagaaagtctgttttc
actctggccggaggtggctttgagtctgccagactgtttcccagagactt
agcctcctttgatggttcctgatgcttatagaactgtctggattctgaaa
ggaacactttgtagaaagagatcctgggaaggatggaatgaagcaggaag
ccattaggagtccgacaaggatgatgacagctaactggtcctgatgcata
atgcaggatgagaaccaggaccatttctgtttgtagttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_92328000_92329149
seq2: B6Ng01-058A24.b_54_1194 (reverse)

seq1  CCGACCTCTCTCTTGCCAAGGCACAACAGGGAGGGTAGGCACCCTG--CA  48
      ||||||| ||| |||||| | ||||||| ||||||||||| |||||   |
seq2  CCGACCTTTCTTTTGCCAGGCCACAACA-GGAGGGTAGGCCCCCTGACTA  49

seq1  TCAGCTGAGGGACCTAGTTCAAGGAAATTCTCTTGA-GAAAGATAACATT  97
       | ||||| ||| ||||||||||||| |||| |||| |||||||||||||
seq2  CCGGCTGA-GGAACTAGTTCAAGGAATTTCT-TTGAGGAAAGATAACATT  97

seq1  GTCTGTGGACAAAGGCCCCTTCGGTCCTCCCTGCTGTCCTTGCAGTGGGA  147
      ||||||||||||||   ||||||||||| |||||||||| ||||||||||
seq2  GTCTGTGGACAAAG---CCTTCGGTCCT-CCTGCTGTCC-TGCAGTGGGA  142

seq1  GATAGGCTTCCCCTCTGAGCCACCAAGGGCTCTGCCGTCTGTTCTGCTTC  197
      ||||||| |||||||||||||||| || |||||| |||||| ||||||||
seq2  GATAGGC-TCCCCTCTGAGCCACC-AGAGCTCTG-CGTCTG-TCTGCTTC  188

seq1  TGTCTATGGAAACTGTCCAGCAGTGACAAGCCAGTCAGACCCGAAGGAAG  247
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTATGAAAACTGTCCAGCAGTGACAAGCCAGTCAGACCCGAAGGAAG  238

seq1  CACCATGCGTGATTTCCCCCTGACTGCCACTTTGAGGGGCGTTTGCCCCA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCATGCGTGATTTCCCCCTGACTGCCACTTTGAGGGGCGTTTGCCCCA  288

seq1  TTGGCCATGGCAGCTTCCCCTGGGAGGCTCAGGACGGAGAGTTCACTAAG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCCATGGCAGCTTCCCCTGGGAGGCTCAGGACGGAGAGTTCACTAAG  338

seq1  GCCAGCTGAAGCTTGGAGTTCAGCATGACCCATGACCCACATATTTATGA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGCTGAAGCTTGGAGTTCAGCATGACCCATGACCCACATATTTATGA  388

seq1  GAGTGAAAAGAAAAATTGTAGTCAGTGACTGAGCTTTCAGAACTGCTTGT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGAAAAGAAAAATTGTAGTCAGTGACTGAGCTTTCAGAACTGCTTGT  438

seq1  TACACAGCACTGGTGTGATAAACGCTGACCAGTAAAGAACTATTCCTCCC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACAGCACTGGTGTGATAAACGCTGACCAGTAAAGAACTATTCCTCCC  488

seq1  ACGGAAGTGGCTCGGCTGGATTCGGACTTTTAGACGTTATCTTTGGATGG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGAAGTGGCTCGGCTGGATTCGGACTTTTAGACGTTATCTTTGGATGG  538

seq1  GAAAGCAGAGCCAGCCTAAGAGAGAAGGCAGCACGGAAACAGAGCTGAGG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGCAGAGCCAGCCTAAGAGAGAAGGCAGCACGGAAACAGAGCTGAGG  588

seq1  TATGGTGATGGTCCTAAGCCTGTTGATGGCTCAGTCTCTGGGCATTTAGC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGTGATGGTCCTAAGCCTGTTGATGGCTCAGTCTCTGGGCATTTAGC  638

seq1  TCTACCTGAGACAGGGCTCTTTCAGTCTCGGGAGCAGAAAGAGGAAACTT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACCTGAGACAGGGCTCTTTCAGTCTCGGGAGCAGAAAGAGGAAACTT  688

seq1  CTCTGACTCAAACTAGAAAAGTCGAAAAAGTCCAGAAGCGATGAGCGTTT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGACTCAAACTAGAAAAGTCGAAAAAGTCCAGAAGCGATGAGCGTTT  738

seq1  CGGGTGCAGCTTGATCCAGGCGCTCTTCGCTGGACCTGCGCCTTTGTCTG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGTGCAGCTTGATCCAGGCGCTCTTCGCTGGACCTGCGCCTTTGTCTG  788

seq1  TCCATCTTGCCTCCCATACAGAGGCTGGCCCCCCTGCTGGAGCATGATGG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATCTTGCCTCCCATACAGAGGCTGGCCCCCCTGCTGGAGCATGATGG  838

seq1  CTCCCTCCCCCCATTCAGGTCTAACGGCACAGTTTCTCCTGGAAGACAAC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTCCCCCCATTCAGGTCTAACGGCACAGTTTCTCCTGGAAGACAAC  888

seq1  AGTTAGTAGTAACCATTTATCTTCCTTTTGCCAGGCAAAGCCAGAGGAGA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAGTAGTAACCATTTATCTTCCTTTTGCCAGGCAAAGCCAGAGGAGA  938

seq1  GAACCCTACCACTGTCCTGGCACCTACCGACCTCAGAGGTTGCATTATAT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCCTACCACTGTCCTGGCACCTACCGACCTCAGAGGTTGCATTATAT  988

seq1  AAGGAGTATGTTGGATTTCCTCAGCCAACCAGGCTGTGAGGAGGGCCTCT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGTATGTTGGATTTCCTCAGCCAACCAGGCTGTGAGGAGGGCCTCT  1038

seq1  CCTTGGCCTATAGGGGGCGTCCTAGGCCAAGTAGGAGTACAGGGCCTCAG  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGGCCTATAGGGGGCGTCCTAGGCCAAGTAGGAGTACAGGGCCTCAG  1088

seq1  GAGGGGTGCTACCAAGAGTGTGCTACACTGCTAGGACTGATGCAACACAG  1147
      ||||||||||||||||||||| ||||||||| ||||||||| ||||||||
seq2  GAGGGGTGCTACCAAGAGTGTCCTACACTGCCAGGACTGATCCAACACAG  1138

seq1  GAA  1150
      |||
seq2  GAA  1141

seq1: chr2_92193134_92194181
seq2: B6Ng01-058A24.g_65_1103

seq1  GAATTCAGGAGGCAGTGACAGGCAGATCTCTAGTCCAGCCTGGTCTACAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGAGGCAGTGACAGGCAGATCTCTAGTCCAGCCTGGTCTACAG  50

seq1  AGTGAGTTCTAGAATAGGGCTACACAGAGAAACCCTGTCTCAAAAAATAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAGTTCTAGAATAGGGCTACACAGAGAAACCCTGTCTCAAAAAATAA  100

seq1  AAAATGAAAATCCAAAAACAAAAACAAAAAAGGAATCTTTACCTCTAAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGAAAATCCAAAAACAAAAACAAAAAAGGAATCTTTACCTCTAAGA  150

seq1  ATAACAGTATTCTGTTGTATAGCTACCATGTGGTTATAATATTGTGGGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACAGTATTCTGTTGTATAGCTACCATGTGGTTATAATATTGTGGGAA  200

seq1  TTTAACATTGCTTACATGTCAGCGTGTAATACTAAGTTCATATTCCAATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAACATTGCTTACATGTCAGCGTGTAATACTAAGTTCATATTCCAATG  250

seq1  TTCCCACTTAACCCAGTAATTGCATTTGTCTGAGGTCACTCTTGGCATTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCACTTAACCCAGTAATTGCATTTGTCTGAGGTCACTCTTGGCATTT  300

seq1  ATTATCCTGGTTGTGTCACCTTACTCTCCTTTATTCTGAAATGGTTTCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATCCTGGTTGTGTCACCTTACTCTCCTTTATTCTGAAATGGTTTCTT  350

seq1  AGGCATTCCTTTCTTAAATTACAGTTTGTTCATTTAGAGCGTGTATGTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCATTCCTTTCTTAAATTACAGTTTGTTCATTTAGAGCGTGTATGTCT  400

seq1  GTGTGTACGTCCTTGCCATGGCACATGTGTAGAGATCAAAGGGCAGCTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTACGTCCTTGCCATGGCACATGTGTAGAGATCAAAGGGCAGCTTT  450

seq1  TGGGAGTCAGTTCTCTCCTCCCACTGTGTGGGTCTCAGGAACTGAACTCG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGTCAGTTCTCTCCTCCCACTGTGTGGGTCTCAGGAACTGAACTCG  500

seq1  GCTGTCAGGATTAGTGACAAGTGTGTGCGAGTGATGTCACCAGGCCCTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTCAGGATTAGTGACAAGTGTGTGCGAGTGATGTCACCAGGCCCTTT  550

seq1  GTGTCTGTGTGTCTGTCCAGTGGTGGCGTCCTCTTCACTGCCTCGGTTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCTGTGTGTCTGTCCAGTGGTGGCGTCCTCTTCACTGCCTCGGTTAT  600

seq1  TCTGCTGAGTTTGCCCCACTGCACTGTGCCAGTCCCCTTCAGGGTAGACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTGAGTTTGCCCCACTGCACTGTGCCAGTCCCCTTCAGGGTAGACT  650

seq1  GAAGCATAGGGTTTTGAATGAGCCTGGAGTCAGGGGTGACAGGCTCCTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCATAGGGTTTTGAATGAGCCTGGAGTCAGGGGTGACAGGCTCCTCA  700

seq1  GTGTCTCACAGCAGGAGGTATGTGCTGTCAGCCTCTTGCTAACTTTCATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCTCACAGCAGGAGGTATGTGCTGTCAGCCTCTTGCTAACTTTCATC  750

seq1  TCTTGAGATCATTTCCATTGAATTTTTTTCACTTGAGAAAGTCTGTTTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGAGATCATTTCCATTGAATTTTTTTCACTTGAGAAAGTCTGTTTTC  800

seq1  ACTCTGGCCGGAGGTGGCTTTGAGTCTGCCAGACTGTTTCCCAGAGACTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGGCCGGAGGTGGCTTTGAGTCTGCCAGACTGTTTCCCAGAGACTT  850

seq1  AGCCTCCTTTGATGGTTCCTGATGCTTATAGAACTGTCTGGATTCTGAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTCCTTTGATGGTTCCTGATGCTTATAGAACTGTCTGGATTCTGAAA  900

seq1  GGAACACTTTGTAGAAAGAGACCTTGGGAAGGATGGAATGAAGCAGGGAA  950
      ||||||||||||||||||||| | ||||||||||||||||||||| ||||
seq2  GGAACACTTTGTAGAAAGAGATCCTGGGAAGGATGGAATGAAGCA-GGAA  949

seq1  GCCAATAGGGAGGTCCGAACAAGGGATGATGACAGCTGACTGGTCCTGAT  1000
      |||| ||||   ||||| |||| |||||||||||||| ||||||||||||
seq2  GCCATTAGG--AGTCCG-ACAA-GGATGATGACAGCTAACTGGTCCTGAT  995

seq1  GCAGTAGATGCAGGGATGGAGAACAGGGACCAGTTCTGTTTGTAGTTT  1048
      ||| || ||||| |||| ||||||  |||||| |||||||||||||||
seq2  GCA-TA-ATGCA-GGAT-GAGAACCAGGACCATTTCTGTTTGTAGTTT  1039