BAC Information

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BAC

Clone NameB6Ng01-058C04
Chromosome2 (Build37)
Map Location 67,986,262 - 68,119,780
singlet/doubletdoublet
Overlap geneStk39
Upstream geneGm1322, Cmya3, LOC621171, LOC227995, B3galt1
Downstream geneLOC100039683, Gm1323, 4933409G03Rik, 4932414N04Rik, LOC667443, Lass6, Nostrin, Spc25, G6pc2, Abcb11
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-058C04.bB6Ng01-058C04.g
ACCDH879795DH879796
length8851,091
definitionDH879795|Mus musculus domesticus DNA, BAC clone: B6Ng01-058C04, 5' end.DH879796|Mus musculus domesticus DNA, BAC clone: B6Ng01-058C04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(67,986,262 - 67,987,151)(68,118,665 - 68,119,780)
sequence
gaattccacacctggcagcacaatatcagaactgcatctcctcaaaagct
ccattttctcctcactgagcacacttggagaagagaaaataaattctctc
cattggggggaggggggaaggacacactgtaatgaaaaagaactttaaag
acactttagcacataaaatctttgagctccatcactgacaatgctttaca
aatttatttccaatttgcagttatgctgagcagacattctgggctgtgca
gaagcaaaattcgggctgcaagcttccgtctcatcagctgagcatccagg
actgcacaagagtgccttgtcacaggccatcaggtggccatttatccaga
ggtatcaccatgagatggccagccaagagagccctgaagttatttccctc
accattttttttagctaaatatacaactccgtgaaagcagatttcttagc
aaagaatttttgctgcacagagaagactttgagcagaagcaaagagagca
ctgagtttccctggatccccagccctggcacttgctaattggcaaccctt
gggtaaaccaagcaaaccctgtgaagacaacgccctctttataacaccaa
gggtacctggtttataaaacagtactgcagagaaaaatcaaaagagataa
tagtctttttcctcgtgttctataataagggggaatatttttatctcact
attatgtccccagcaattatcattgcagaggcacaaaagaggcccttagt
aactaggggctgcacagaagatgtatgaatagacactgtttagactctga
cacttggggacattgcaagactgttcatcttattatttctccagggggga
agccagtaattctttttcttttccctctctcagct
gaattcactgtagaaatgaaaatgatgaacttggaaaaccgagccaaatt
ctgtgaagtcgagatcattagaatttcaggaacatgccttttgttctctt
tccacttccctaataaccacatcaaggattttgaagagaggctaggagaa
aggcagaagagacgctgctgcagagaggcatgccctatttcctacccacc
gatcacaggactcctcatatgactggccatcctgtagctctttgcacgag
tggcttagcaacagagttttaaaagcacaaatgtggcatttctgagttac
tatgcatacccaagtgctggccgggccatagctagtatatcctagatatt
tgcctagattgagtttgcattccctactgttggctgtgggttctgctctt
gccagaaatctgagttgtgcagcaatttaagtgccttcatcacagaaagt
ttttgttgttgatgttaatttgattgtttgtttccatttggccatatata
cacctagaaaccttgtcaaatgtatttgtatttcacataatactgtgcag
caggaacagggtaatgtcacacccattcaaccaatttaattctaaaaatc
tttactcatcatttacctgggtcccaggtcctgctgctcacactggaaga
ccaggtcactgcccctgcttttagatcatgagtatttattgaaaagactc
atcactgattcctgatggccttattatccttccatcttcctcatggacat
tcagccatttgccttctctaatcaaatacttctcttgctttaaattaaag
ttgacagtgaatcaatgattatctcattttgtcagaaaccgatagagaga
gctcggccactgcattaaccacgtgggaaagggtcctcgtggctgtgctg
tggaaacccttcctgccaagcccacgggcacagtgtagtgccttcttgaa
agcacacgataggatttactgtactgggcaatagtgtatcagctcgtgga
gtgagaacttcttaacatttcggctgcctttttttctgagttagagtcag
aaatcaactataaaaagaagtactagtgactaagcctgtat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_67986262_67987151
seq2: B6Ng01-058C04.b_46_930

seq1  GAATTCCACACCTGGCAGCACAATATCAGAACTGCATCTCCTCAAAAGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACACCTGGCAGCACAATATCAGAACTGCATCTCCTCAAAAGCT  50

seq1  CCATTTTCTCCTCACTGAGCACACTTGGAGAAGAGAAAATAAATTCTCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTTCTCCTCACTGAGCACACTTGGAGAAGAGAAAATAAATTCTCTC  100

seq1  CATTGGGGGGAGGGGGGAAGGACACACTGTAATGAAAAAGAACTTTAAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGGGGGGAGGGGGGAAGGACACACTGTAATGAAAAAGAACTTTAAAG  150

seq1  ACACTTTAGCACATAAAATCTTTGAGCTCCATCACTGACAATGCTTTACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTTTAGCACATAAAATCTTTGAGCTCCATCACTGACAATGCTTTACA  200

seq1  AATTTATTTCCAATTTGCAGTTATGCTGAGCAGACATTCTGGGCTGTGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTATTTCCAATTTGCAGTTATGCTGAGCAGACATTCTGGGCTGTGCA  250

seq1  GAAGCAAAATTCGGGCTGCAAGCTTCCGTCTCATCAGCTGAGCATCCAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCAAAATTCGGGCTGCAAGCTTCCGTCTCATCAGCTGAGCATCCAGG  300

seq1  ACTGCACAAGAGTGCCTTGTCACAGGCCATCAGGTGGCCATTTATCCAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCACAAGAGTGCCTTGTCACAGGCCATCAGGTGGCCATTTATCCAGA  350

seq1  GGTATCACCATGAGATGGCCAGCCAAGAGAGCCCTGAAGTTATTTCCCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATCACCATGAGATGGCCAGCCAAGAGAGCCCTGAAGTTATTTCCCTC  400

seq1  ACCATTTTTTTTAGCTAAATATACAACTCCGTGAAAGCAGATTTCTTAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATTTTTTTTAGCTAAATATACAACTCCGTGAAAGCAGATTTCTTAGC  450

seq1  AAAGAATTTTTGCTGCACAGAGAAGACTTTGAGCAGAAGCAAAGAGAGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAATTTTTGCTGCACAGAGAAGACTTTGAGCAGAAGCAAAGAGAGCA  500

seq1  CTGAGTTTCCCTGGATCCCCAGCCCTGGCACTTGCTAATTGGCAACCCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGTTTCCCTGGATCCCCAGCCCTGGCACTTGCTAATTGGCAACCCTT  550

seq1  GGGTAAACCAAGCAAACCCTGTGAAGACAACGCCCTCTTTATAACACCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTAAACCAAGCAAACCCTGTGAAGACAACGCCCTCTTTATAACACCAA  600

seq1  GGGTACCTGGTTTATAAAACAGTACTGCAGAGAAAAATCAAAAGAGATAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTACCTGGTTTATAAAACAGTACTGCAGAGAAAAATCAAAAGAGATAA  650

seq1  TAGTC-TTTTCCTCGTGTTCTATAAAAAGGGGGAATATTTTTATCTCACT  699
      ||||| ||||||||||||||||||| ||||||||||||||||||||||||
seq2  TAGTCTTTTTCCTCGTGTTCTATAATAAGGGGGAATATTTTTATCTCACT  700

seq1  ATTATGTCCCCAGCAATTATCATTGCAGAGGCACAAAAGAGGCCCTTAGT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATGTCCCCAGCAATTATCATTGCAGAGGCACAAAAGAGGCCCTTAGT  750

seq1  AACTAGGGGCTGCACAGAAGAAGGTATGAATAGACACTGTTTAGACTCTG  799
      |||||||||||||||||||| | |||||||||||||||||||||||||||
seq2  AACTAGGGGCTGCACAGAAG-ATGTATGAATAGACACTGTTTAGACTCTG  799

seq1  ACACTTGGGGACATTGCAAGACTTGTTTATTCTTAATTATTTCTTCCAGG  849
      |||||||||||||||||||||| |||| | |||| |||||||| ||||||
seq2  ACACTTGGGGACATTGCAAGAC-TGTTCA-TCTT-ATTATTTC-TCCAGG  845

seq1  GGGGAAAGCCAGT-ATTCTTTTTCTTTTTCCCTCTCTCAACT  890
      |||| |||||||| |||||||||| |||||||||||||| ||
seq2  GGGG-AAGCCAGTAATTCTTTTTC-TTTTCCCTCTCTCAGCT  885

seq1: chr2_68118665_68119780
seq2: B6Ng01-058C04.g_68_1158 (reverse)

seq1  ATACAGGCTGTTAGTCACTAGTACTTTCTTTTTTAATTAGTTTAGATTTC  50
      ||||||||  |||||||||||||| ||||||||    |||||  ||||||
seq2  ATACAGGC--TTAGTCACTAGTAC-TTCTTTTT---ATAGTT--GATTTC  42

seq1  TTGACCTTCTAACTCAAGAAAAAAGAGGCCAGCCGGAAATGTATAAG-AG  99
       ||||  |||||||| |||||||| ||| ||||| ||||||| |||| ||
seq2  -TGAC--TCTAACTC-AGAAAAAA-AGG-CAGCC-GAAATGT-TAAGAAG  84

seq1  TTCTCACTCCACGGAGCTGGATACACTATTTGCCCAGTTACAGTAAATTC  149
      |||||||||||| ||||| ||||||||| |||||||| ||||||||| ||
seq2  TTCTCACTCCAC-GAGCT-GATACACTA-TTGCCCAG-TACAGTAAA-TC  129

seq1  CTATCCGTGTGCTTTCAAGAAGGCACTAACACTGGTGCCCGTGGGCTTGG  199
      |||| |||||||||||||||||||||| ||||| ||||||||||||||||
seq2  CTAT-CGTGTGCTTTCAAGAAGGCACT-ACACT-GTGCCCGTGGGCTTGG  176

seq1  CAGGAAGGGGTTTCCACAGCACAGCCACGAGGACCCCTTCCCACGTGGTT  249
      |||||| ||||||||||||||||||||||||||||| |||||||||||||
seq2  CAGGAA-GGGTTTCCACAGCACAGCCACGAGGACCCTTTCCCACGTGGTT  225

seq1  AATGCAGTGGCCGAGCTTCTCTCTATCGGTTTCTGACAAAATGAGATAAT  299
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  AATGCAGTGGCCGAGC-TCTCTCTATCGGTTTCTGACAAAATGAGATAAT  274

seq1  CATTGATTCACTGTCAACTTTAATTTAAAGCAAGAGAAGTATTTGATTAG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGATTCACTGTCAACTTTAATTTAAAGCAAGAGAAGTATTTGATTAG  324

seq1  AGAAGGCAAATGGCTGAATGTCCATGAGGAAGATGGAAGGATAATAAGGC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGCAAATGGCTGAATGTCCATGAGGAAGATGGAAGGATAATAAGGC  374

seq1  CATCAGGAATCAGTGATGAGTCTTTTCAATAAATACTCATGATCTAAAAG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAGGAATCAGTGATGAGTCTTTTCAATAAATACTCATGATCTAAAAG  424

seq1  CAGGGGCAGTGACCTGGTCTTCCAGTGTGAGCAGCAGGACCTGGGACCCA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGGCAGTGACCTGGTCTTCCAGTGTGAGCAGCAGGACCTGGGACCCA  474

seq1  GGTAAATGATGAGTAAAGATTTTTAGAATTAAATTGGTTGAATGGGTGTG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAATGATGAGTAAAGATTTTTAGAATTAAATTGGTTGAATGGGTGTG  524

seq1  ACATTACCCTGTTCCTGCTGCACAGTATTATGTGAAATACAAATACATTT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTACCCTGTTCCTGCTGCACAGTATTATGTGAAATACAAATACATTT  574

seq1  GACAAGGTTTCTAGGTGTATATATGGCCAAATGGAAACAAACAATCAAAT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAGGTTTCTAGGTGTATATATGGCCAAATGGAAACAAACAATCAAAT  624

seq1  TAACATCAACAACAAAAACTTTCTGTGATGAAGGCACTTAAATTGCTGCA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACATCAACAACAAAAACTTTCTGTGATGAAGGCACTTAAATTGCTGCA  674

seq1  CAACTCAGATTTCTGGCAAGAGCAGAACCCACAGCCAACAGTAGGGAATG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTCAGATTTCTGGCAAGAGCAGAACCCACAGCCAACAGTAGGGAATG  724

seq1  CAAACTCAATCTAGGCAAATATCTAGGATATACTAGCTATGGCCCGGCCA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACTCAATCTAGGCAAATATCTAGGATATACTAGCTATGGCCCGGCCA  774

seq1  GCACTTGGGTATGCATAGTAACTCAGAAATGCCACATTTGTGCTTTTAAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTTGGGTATGCATAGTAACTCAGAAATGCCACATTTGTGCTTTTAAA  824

seq1  ACTCTGTTGCTAAGCCACTCGTGCAAAGAGCTACAGGATGGCCAGTCATA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGTTGCTAAGCCACTCGTGCAAAGAGCTACAGGATGGCCAGTCATA  874

seq1  TGAGGAGTCCTGTGATCGGTGGGTAGGAAATAGGGCATGCCTCTCTGCAG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGAGTCCTGTGATCGGTGGGTAGGAAATAGGGCATGCCTCTCTGCAG  924

seq1  CAGCGTCTCTTCTGCCTTTCTCCTAGCCTCTCTTCAAAATCCTTGATGTG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCGTCTCTTCTGCCTTTCTCCTAGCCTCTCTTCAAAATCCTTGATGTG  974

seq1  GTTATTAGGGAAGTGGAAAGAGAACAAAAGGCATGTTCCTGAAATTCTAA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATTAGGGAAGTGGAAAGAGAACAAAAGGCATGTTCCTGAAATTCTAA  1024

seq1  TGATCTCGACTTCACAGAATTTGGCTCGGTTTTCCAAGTTCATCATTTTC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCTCGACTTCACAGAATTTGGCTCGGTTTTCCAAGTTCATCATTTTC  1074

seq1  ATTTCTACAGTGAATTC  1116
      |||||||||||||||||
seq2  ATTTCTACAGTGAATTC  1091