BAC Information

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BAC

Clone NameB6Ng01-058E04
Chromosome2 (Build37)6 (Build37)
Map Location 142,776,490 - 142,777,698137,411,531 - 137,412,479
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC668913, LOC668914, Kif16b
Downstream geneSnrpb2, Otor, LOC668915, LOC668916, Pcsk2, Bfsp1, LOC100043799, LOC100043534, Dstn, Rrbp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-058E04.bB6Ng01-058E04.g
ACCDH879888DH879889
length975950
definitionDH879888|Mus musculus domesticus DNA, BAC clone: B6Ng01-058E04, 5' end.DH879889|Mus musculus domesticus DNA, BAC clone: B6Ng01-058E04, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(142,776,490 - 142,777,698)(137,411,531 - 137,412,479)
sequence
gaattctttgttcagttctgagccccattttttaatggggttatttgatt
ttctgaagtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggtct
ttttgtcctattgacggtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcaattctcgatcttacagagcaagccattgctgtt
ctgttcaggaatctttcccctgtacccatatcttcaaggcttttccccac
tttctcctctataagtttcagtgtctctgcttttatgtgaagttccttga
tccacttagatttgaccttagtacaaggagataagtatggatcgattccc
attcttctacatgataacaaccagttgtgccagcaccaattgttgaaaat
gctgtctttcttccactggatggttttagctcccttgtcgaagatcaagt
gaccataggtgtgtgggttcatttctgggtcttcaattctattccattgg
tctacttgtctgtctctataccagtaccatgcagtttttatcacaattgc
cctgtagtaaagctttaggtcaggcatggtgattccaccagaggttcttt
tatccttgagaagagtttttgctatcctaggttttttgttattccagatg
aatttgcaaattgctccttctaattcgttgaagaattgagttggaatttg
caatatttttttattgtgctttttttctcactttcagttttggttgtcca
gcccaggtcctgactcacccagggcaagtttgagaacattgagctaaccc
tgcagccctgatacccatcatgttactatggaaatacagtgggatttcaa
aagcctaaaagccatttcttatctataaaacttaatttgtagatagtggg
tattcttcttaataagcaaatatta
gaattcagaagtcacgacaacaacaaactcagcatgtaaggacaggtatt
ggacaccatcccttaagaacattgttgagtgtctctatggattccgacag
gagattctctgggtcttctttgcatttctgttgtcagagtcattttaacc
tgtgtagctagtggcattatattctttggattttgtatgattaaagtaca
tgattgtgtgttgtgaccatgaaagttgttgaaatgaacatcaatgctgt
cgtgggaacctgttattttatgctactttctaagatcagagaggaggtga
tggtctagaccagtggttctctgttgtgggaaatattaaaaaaagaagaa
gaaggaggaagaggaggaggaggaggagacatcctaagacatcctagagg
tcaacattcgagttgaaagtgatacatttggcagcttccatgtaggaatg
gggttattgtgagcccacttgtgtgtctgatatttgtcccctaccccaag
tttccctccattcccatctatcttatttctttcaggatttattttatttg
taactatgtatgagattgtgtgtggagcgatgtgcgagcacggtgtccac
cggagttcagaaggtggtatcagatcccctggtgctggctggagtcatag
gtagctgtgagtcatctgacatgggtgtcgggtcctctgtaagaatggta
catgctcttaacagctgagatatctctcccagtcatcttcttgaacctgt
atgtaagatcagcttagtattttgtcagtgaccttcataaacggtaaagc
acaccaactaaatagctaataccctgctgaattctatgactgtagagtcc
tggaatacagcagaccttggtgatgtccagaaagatcaggccattaagtc
ttctttgctggcaagggcattggcagaatgtgtctgtaccttgcagctga

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_142776490_142777698
seq2: B6Ng01-058E04.b_42_790 (reverse)

seq1  AAATTCCAACTCAATTCTTCAACGAATTAGAAGGAGCAATTTGCAAATTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCCAACTCAATTCTTCAACGAATTAGAAGGAGCAATTTGCAAATTC  50

seq1  ATCTGGAATAACAAAAAACCTAGGATAGCAAAAAGTCTTCTCAAGGATAA  100
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  ATCTGGAATAACAAAAAACCTAGGATAGCAAAAACTCTTCTCAAGGATAA  100

seq1  AAGAACCTCTGGTGGAATCACCATGCCTGACCTAAAGCTTTACTACAGAG  150
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  AAGAACCTCTGGTGGAATCACCATGCCTGACCTAAAGCTTTACTACAGGG  150

seq1  CAATTGTGATAAAAACTGCATGGTACTGGTATAGAGACAGACAAGTAGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTGTGATAAAAACTGCATGGTACTGGTATAGAGACAGACAAGTAGAC  200

seq1  CAATGGAATAGAATTGAAGACCCAGAAATGAACCCACACACCTATGGTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGGAATAGAATTGAAGACCCAGAAATGAACCCACACACCTATGGTCA  250

seq1  CTTGATCTTCGACAAGGGAGCTAAAACCATCCAGAGGAAGAAAGACAGCA  300
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  CTTGATCTTCGACAAGGGAGCTAAAACCATCCAGTGGAAGAAAGACAGCA  300

seq1  TTTTCAACAATTGGTGCTGGCACAACTGGTTGTTATCATGTAGAAGAATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAACAATTGGTGCTGGCACAACTGGTTGTTATCATGTAGAAGAATG  350

seq1  GGAATCGATCCATACTTATCTCCTTGTACTAAGGTCAAATCTAAGTGGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATCGATCCATACTTATCTCCTTGTACTAAGGTCAAATCTAAGTGGAT  400

seq1  CAAGGAACTTCACATAAAACCAGAGACACTGAAACTTATAGAGGAGAAAG  450
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  CAAGGAACTTCACATAAAAGCAGAGACACTGAAACTTATAGAGGAGAAAG  450

seq1  TGGGGAAAAGCCTTGAAGATATGGGCACAGGGGACAAATTCCTGAACAGA  500
      ||||||||||||||||||||||||| |||||||| | |||||||||||||
seq2  TGGGGAAAAGCCTTGAAGATATGGGTACAGGGGAAAGATTCCTGAACAGA  500

seq1  ACAGCAATGGCTTGTGCTGTAAGATCGAGAATTGACAAATGGGACCTAAT  550
      ||||||||||||||  ||||||||||||||||||||||||||||||||||
seq2  ACAGCAATGGCTTGCTCTGTAAGATCGAGAATTGACAAATGGGACCTAAT  550

seq1  GAAACTCCAAAGTTTCTGCAAGGCAAAAGACACCGTCAATAAGACAAAAA  600
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  GAAACTCCAAAGTTTCTGCAAGGCAAAAGACACCGTCAATAGGACAAAAA  600

seq1  GACCACCAACAGATTGGGAAAGGATCTTTACCTATCCTAAATCAGATAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCACCAACAGATTGGGAAAGGATCTTTACCTATCCTAAATCAGATAGG  650

seq1  GGACTAATATCCAACATATATAAAGAACTCAAGAAGGTGGACTTCAGAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTAATATCCAACATATATAAAGAACTCAAGAAGGTGGACTTCAGAAA  700

seq1  ATCAAATAACCCCATTAAAAAATGGGGCTCACAAAACCATCCAGTGGAAG  750
      ||||||||||||||||||||||||||||||| ||            ||| 
seq2  ATCAAATAACCCCATTAAAAAATGGGGCTCAGAA----------CTGAAC  740

seq1  AAAGACAGCATTTTCAACAATTGGTGCTGGCACAACTGGTTGTTATCATG  800
      |||||    |||                                      
seq2  AAAGA----ATTC-------------------------------------  749

seq1  TAGAAGAATGCGAATCGATCCATACTTATCTCCTTGTACTAAGGTCAAAT  850
                                                        
seq2  --------------------------------------------------  749

seq1  CTAAGTGGATCAAGGAACTTCACATAAAACCAGAGACACTGAAACTTATA  900
                                                        
seq2  --------------------------------------------------  749

seq1  GAGGAGAAAGTGGGGAAAAGCCTTGAAGATATGGGCACAGGGGAAAAATT  950
                                                        
seq2  --------------------------------------------------  749

seq1  CCTGAACAGAAGAGCAATGGCTTGTGCTGTAAGATCGAGAATTGACAAAT  1000
                                                        
seq2  --------------------------------------------------  749

seq1  GGGACCTAATGAAACTCCAAAGTTTCTGCAAGGCAAAAGACACTGTCTAT  1050
                                                        
seq2  --------------------------------------------------  749

seq1  AAGACAAAAAGACCACCAACAGACTGGGAAAGGATCTTTACCTATCCTAA  1100
                                                        
seq2  --------------------------------------------------  749

seq1  ATCAGATAGGGGACTAATATCCAACATATATAAAGAACTCAAGAAGGTGG  1150
                                                        
seq2  --------------------------------------------------  749

seq1  ACCTCAGAAAATCAAATAACCCCATTAAAAAATGGGGCTCAGAACTGAAC  1200
                                                        
seq2  --------------------------------------------------  749

seq1  AAAGAATTC  1209
               
seq2  ---------  749

seq1: chr6_137411531_137412479
seq2: B6Ng01-058E04.g_67_1016

seq1  GAATTCAGAAGTCACGACAACAACAAACTCAGCATGTAAGGACAGGTATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAAGTCACGACAACAACAAACTCAGCATGTAAGGACAGGTATT  50

seq1  GGACACCATCCCTTAAGAACATTGTTGAGTGTCTCTATGGATTCCGACAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACACCATCCCTTAAGAACATTGTTGAGTGTCTCTATGGATTCCGACAG  100

seq1  GAGATTCTCTGGGTCTTCTTTGCATTTCTGTTGTCAGAGTCATTTTAACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATTCTCTGGGTCTTCTTTGCATTTCTGTTGTCAGAGTCATTTTAACC  150

seq1  TGTGTAGCTAGTGGCATTATATTCTTTGGATTTTGTATGATTAAAGTACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTAGCTAGTGGCATTATATTCTTTGGATTTTGTATGATTAAAGTACA  200

seq1  TGATTGTGTGTTGTGACCATGAAAGTTGTTGAAATGAACATCAATGCTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTGTGTGTTGTGACCATGAAAGTTGTTGAAATGAACATCAATGCTGT  250

seq1  CGTGGGAACCTGTTATTTTATGCTACTTTCTAAGATCAGAGAGGAGGTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGGGAACCTGTTATTTTATGCTACTTTCTAAGATCAGAGAGGAGGTGA  300

seq1  TGGTCTAGACCAGTGGTTCTCTGTTGTGGGAAATATTAAAAAAAGAAGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCTAGACCAGTGGTTCTCTGTTGTGGGAAATATTAAAAAAAGAAGAA  350

seq1  GAAGGAGGAAGAGGAGGAGGAGGAGGAGACATCCTAAGACATCCTAGAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAGGAAGAGGAGGAGGAGGAGGAGACATCCTAAGACATCCTAGAGG  400

seq1  TCAACATTCGAGTTGAAAGTGATACATTTGGCAGCTTCCATGTAGGAATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACATTCGAGTTGAAAGTGATACATTTGGCAGCTTCCATGTAGGAATG  450

seq1  GGGTTATTGTGAGCCCACTTGTGTGTCTGATATTTGTCCCCTACCCCAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTATTGTGAGCCCACTTGTGTGTCTGATATTTGTCCCCTACCCCAAG  500

seq1  TTTCCCTCCATTCCCATCTATCTTATTTCTTTCAGGATTTATTTTATTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCTCCATTCCCATCTATCTTATTTCTTTCAGGATTTATTTTATTTG  550

seq1  TAACTATGTATGAGATTGTGTGTGGAGCGATGTGCGAGCACGGTGTCCAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTATGTATGAGATTGTGTGTGGAGCGATGTGCGAGCACGGTGTCCAC  600

seq1  CGGAGTTCAGAAGGTGGTATCAGATCCCCTGGTGCTGGCTGGAGTCATAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGAGTTCAGAAGGTGGTATCAGATCCCCTGGTGCTGGCTGGAGTCATAG  650

seq1  GTAGCTGTGAGTCATCTGACATGGGTGTCGGGTCCTCTGTAAGAATGGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCTGTGAGTCATCTGACATGGGTGTCGGGTCCTCTGTAAGAATGGTA  700

seq1  CATGCTCTTAACAGCTGAGATATCTCTCCCAGTCATCTTCTTGAACCTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCTCTTAACAGCTGAGATATCTCTCCCAGTCATCTTCTTGAACCTGT  750

seq1  ATGTAAGATCAGCTTAGTATTTTGTCAGTGACCTTCATAAACGGTAAAGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAAGATCAGCTTAGTATTTTGTCAGTGACCTTCATAAACGGTAAAGC  800

seq1  ACACCAACTAAATAGCTAATACCCTGCTGAATCCTATGACTGTAGAGTCC  850
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  ACACCAACTAAATAGCTAATACCCTGCTGAATTCTATGACTGTAGAGTCC  850

seq1  TGG-ACACAGCAGACCTTGGTGATGTCCAGAAAGATCAGGCCAGTAAG-C  898
      ||| | ||||||||||||||||||||||||||||||||||||| |||| |
seq2  TGGAATACAGCAGACCTTGGTGATGTCCAGAAAGATCAGGCCATTAAGTC  900

seq1  CTCTTTGCCTGGCAAGGGCA-TGGCAGGATGTGTCTGTACCCTGCAGGCT  947
       |||||| |||||||||||| |||||| ||||||||||||| |||| |||
seq2  TTCTTTG-CTGGCAAGGGCATTGGCAGAATGTGTCTGTACCTTGCA-GCT  948

seq1  GA  949
      ||
seq2  GA  950