BAC Information

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BAC

Clone NameB6Ng01-058N18
Chromosome2 (Build37)
Map Location 137,928,969 - 138,057,583
singlet/doubletdoublet
Overlap genenone
Upstream geneJag1
Downstream geneBtbd3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-058N18.bB6Ng01-058N18.g
ACCDH880320DH880321
length7571,062
definitionDH880320|Mus musculus domesticus DNA, BAC clone: B6Ng01-058N18, 5' end.DH880321|Mus musculus domesticus DNA, BAC clone: B6Ng01-058N18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(138,056,827 - 138,057,583)(137,928,969 - 137,930,045)
sequence
gaattctccctttagtggcttctgagtcagattatcatgctcttttaatt
acttccttccttggtctctagaacaatacactagtttggtttttgacctt
ccttgacgcatttttccatcttttttactggatcttgtctcattcctgag
ctctatagtagaaacaacacaggaagtaaccatttccaagcattctgtgc
gtggtagggaggataaacatctaagtctgatggctgaaaagaaaagagga
gatgagaaattgaaggtagtacaagagacagtaggaaattttctttcaca
aagctttactatgaagggatacataacaaagatgctttctagaggtgaaa
atagagcctataaaagatgttcaagataggagaaatgactcctgaataac
ccgaatcctgatgagaatgacctagtggtggtggtggtcgtgggtgcaga
tgagaggtggattcgggggcagtgtaatggttgtgggcacctattgagca
agtcgagggcttactctagctggaaataggagaaacatcttaaccaagag
aagagaaacaagtaagcatgggggcatttgcttagagacttcttggtgtt
gtgggcatggaaagaatgctacagggtgctttaattttcgaagtcatctt
tgaactggagtgagctgaaaggcatttgggagtctgaagaacagaatttg
gattgaagtgagaaaagcagttggatatgatgacgaatgaaacctggaga
gtaagga
gaattccatgcatttattttgatcgtatctctactcctcaccctagctcc
ttgcagatacactcccacctccatattcaatcttatatcatctctttatt
tttttttttggtttttaattaaaaatagaattctttcatattccctcccc
cctttcttctctcttattttctgcattctgaccatttgtgagtctttgta
ttaatcttcatttactgtaaaaaaaaaaaaacagttcctgggtgagggtt
gattaatatataatctacggtataaagataagcatttatagcagtggtcc
tcaagctgtgggctgtggaccctttggcttgcatatcagatattctgcat
atcagatatttatagtataattcataatagcaaaattgtagtttttggag
caacaacaagataattttatggtggatgtcgcaacagcatgagatatcgt
attaaaggctcgcagcattaggaaggttgagaaccactgatttagagggt
agtttgacattacaaccatttagcagaataaaagtggtaatttctcccct
agggaatatgacatacacaaacatgaatttttgactccggggttgaaacc
aaaaatgggttacctagtgttgaatcaccagcattttttttttacaaagt
taatagaatcaaggatatactcactagctgagtgacacttccctcgattt
gttttcaacacgtgagcagtaattgtagaagtcaacttattcgatgtgtt
gatctaataataattgatacttctccagtgcttttatcattaaaattaac
tagccataatatcattgagattctcaagtttattagcaaaacttattagt
ataatttattaaaatacttttgctctattaacactttaatatactcttaa
tgtcttttccataagtcatactcattataaatttgataaattttcacatc
cagtgtcaattcttttcagaacatctttcagtttatatatcccttttttg
tttcaaaatctattatatctgtattattttctgttatgttgctaaaaatt
aaaaaaataagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_138056827_138057583
seq2: B6Ng01-058N18.b_48_804 (reverse)

seq1  TCCTTACTCCTCAGGTTTCATTCGTCATCATATCCAACTGCTTTTCTCAC  50
      |||||||||  |||||||||||||||||||||||||||||||||||||||
seq2  TCCTTACTCTCCAGGTTTCATTCGTCATCATATCCAACTGCTTTTCTCAC  50

seq1  TTCCATCCGAATTCTGTTCTTCAGACTCCCAAATGCCTTTCAGCACACTC  100
      ||| |||| ||||||||||||||||||||||||||||||||||| |||||
seq2  TTCAATCCAAATTCTGTTCTTCAGACTCCCAAATGCCTTTCAGCTCACTC  100

seq1  CAGTTCAAAGATGACTTCGAAAATTAAAGCACCCTGTAGCATTCTTTCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTCAAAGATGACTTCGAAAATTAAAGCACCCTGTAGCATTCTTTCCA  150

seq1  TGCCCACAACACCAAGAAGTCTCTAAGCAAATGCCCCCATGCTTACTTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCACAACACCAAGAAGTCTCTAAGCAAATGCCCCCATGCTTACTTGT  200

seq1  TTCTCTTCTCTTGGTTAAGATGTTTCTCCTATTTCCAGCTAGAGTAAGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTTCTCTTGGTTAAGATGTTTCTCCTATTTCCAGCTAGAGTAAGCC  250

seq1  CTCGACTTGCTCAATAGGTGCCCACAACCATTACACTGCCCCCGAATCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGACTTGCTCAATAGGTGCCCACAACCATTACACTGCCCCCGAATCCA  300

seq1  CCTCTCATCTGCACCCACGACCACCACCACCACTAGGTCATTCTCATCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCATCTGCACCCACGACCACCACCACCACTAGGTCATTCTCATCAG  350

seq1  GATTCGGGTTATTCAGGAGTCATTTCTCCTATCTTGAACATCTTTTATAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCGGGTTATTCAGGAGTCATTTCTCCTATCTTGAACATCTTTTATAG  400

seq1  GCTCTATTTTCACCTCTAGAAAGCATCTTTGTTATGTATCCCTTCATAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTATTTTCACCTCTAGAAAGCATCTTTGTTATGTATCCCTTCATAGT  450

seq1  AAAGCTTTGTGAAAGAAAATTTCCTACTGTCTCTTGTACTACCTTCAATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTTTGTGAAAGAAAATTTCCTACTGTCTCTTGTACTACCTTCAATT  500

seq1  TCTCATCTCCTCTTTTCTTTTCAGCCATCAGACTTAGATGTTTATCCTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATCTCCTCTTTTCTTTTCAGCCATCAGACTTAGATGTTTATCCTCC  550

seq1  CTACCACGCACAGAATGCTTGGAAATGGTTACTTCCTGTGTTGTTTCTAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCACGCACAGAATGCTTGGAAATGGTTACTTCCTGTGTTGTTTCTAC  600

seq1  TATAGAGCTCAGGAATGAGACAAGATCCAGTAAAAAAGATGGAAAAATGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGAGCTCAGGAATGAGACAAGATCCAGTAAAAAAGATGGAAAAATGC  650

seq1  GTCAAGGAAGGTCAAAAACCAAACTAGTGTATTGTTCTAGAGACCAAGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAGGAAGGTCAAAAACCAAACTAGTGTATTGTTCTAGAGACCAAGGA  700

seq1  AGGAAGTAATTAAAAGAGCATGATAATCTGACTCAGAAGCCACTAAAGGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGTAATTAAAAGAGCATGATAATCTGACTCAGAAGCCACTAAAGGG  750

seq1  AGAATTC  757
      |||||||
seq2  AGAATTC  757

seq1: chr2_137928969_137930045
seq2: B6Ng01-058N18.g_70_1131

seq1  GAATTCCATGCATTTATTTTGATCGTATCTCTACTCCTCACCCTAGCTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATGCATTTATTTTGATCGTATCTCTACTCCTCACCCTAGCTCC  50

seq1  TTGCAGATACACTCCCACCTCCATATTCAATCTTATATCATCTCTTTATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAGATACACTCCCACCTCCATATTCAATCTTATATCATCTCTTTATT  100

seq1  TTTTTTTTTGGTTTTTAATTAAAAATAGAATTCTTTCATATTCCCTCCCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTGGTTTTTAATTAAAAATAGAATTCTTTCATATTCCCTCCCC  150

seq1  CCTTTCTTCTCTCTTATTTTCTGCATTCTGACCATTTGTGAGTCTTTGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCTTCTCTCTTATTTTCTGCATTCTGACCATTTGTGAGTCTTTGTA  200

seq1  TTAATCTTCATTTACTGTAAAAAAAAAAAAACAGTTCCTGGGTGAGGGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATCTTCATTTACTGTAAAAAAAAAAAAACAGTTCCTGGGTGAGGGTT  250

seq1  GATTAATATATAATCTACGGTATAAAGATAAGCATTTATAGCAGTGGTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAATATATAATCTACGGTATAAAGATAAGCATTTATAGCAGTGGTCC  300

seq1  TCAAGCTGTGGGCTGTGGACCCTTTGGCTTGCATATCAGATATTCTGCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGCTGTGGGCTGTGGACCCTTTGGCTTGCATATCAGATATTCTGCAT  350

seq1  ATCAGATATTTATAGTATAATTCATAATAGCAAAATTGTAGTTTTTGGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGATATTTATAGTATAATTCATAATAGCAAAATTGTAGTTTTTGGAG  400

seq1  CAACAACAAGATAATTTTATGGTGGATGTCGCAACAGCATGAGATATCGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAACAAGATAATTTTATGGTGGATGTCGCAACAGCATGAGATATCGT  450

seq1  ATTAAAGGCTCGCAGCATTAGGAAGGTTGAGAACCACTGATTTAGAGGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAGGCTCGCAGCATTAGGAAGGTTGAGAACCACTGATTTAGAGGGT  500

seq1  AGTTTGACATTACAACCATTTAGCAGAATAAAAGTGGTAATTTCTCCCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTGACATTACAACCATTTAGCAGAATAAAAGTGGTAATTTCTCCCCT  550

seq1  AGGGAATATGACATACACAAACATGAATTTTTGACTCCGGGGTTGAAACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAATATGACATACACAAACATGAATTTTTGACTCCGGGGTTGAAACC  600

seq1  AAAAATGGGTTACCTAGTGTTGAATCACCAGCATTTTTTTTTTACAAAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATGGGTTACCTAGTGTTGAATCACCAGCATTTTTTTTTTACAAAGT  650

seq1  TAATAGAATCAAGGATATACTCACTAGCTGAGTGACACTTCCCTCGATTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAGAATCAAGGATATACTCACTAGCTGAGTGACACTTCCCTCGATTT  700

seq1  GTTTTCAACACGTGAGCAGTAATTGTAGAAGTCAACTTATTCGATGTGTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCAACACGTGAGCAGTAATTGTAGAAGTCAACTTATTCGATGTGTT  750

seq1  GATCTAATAATAATTGATACTTCTCCAGTGCTTTTATCATTAAAATTAAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTAATAATAATTGATACTTCTCCAGTGCTTTTATCATTAAAATTAAC  800

seq1  TAGCCATAATATCATTGAGATTCTCAAGTTTATTAGCAAAACTTATTAGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCATAATATCATTGAGATTCTCAAGTTTATTAGCAAAACTTATTAGT  850

seq1  ATAATTTATTAAAATACTTTTGCTCTATTAACACTTTAATATACTCTTAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTTATTAAAATACTTTTGCTCTATTAACACTTTAATATACTCTTAA  900

seq1  TGTCTTTTCCAATAAGTCAATACTCATTATAAATTTTGATTAAATTTTCC  950
      |||||||||| ||||||| |||||||||||||| ||||| |||||||| |
seq2  TGTCTTTTCC-ATAAGTC-ATACTCATTATAAA-TTTGA-TAAATTTT-C  945

seq1  ACATCCAAGTGTCAATTCTTTTCAGAACAATCTTTCAAGTATATAATATC  1000
      |||||| ||||||||||||||||||||| ||||||| ||| ||| |||||
seq2  ACATCC-AGTGTCAATTCTTTTCAGAAC-ATCTTTC-AGTTTAT-ATATC  991

seq1  CCTTTTTTGTTTCCAAAATTCTATTTATATCTGTATTATTTTTCTGTTAT  1050
      |||||||||||||  ||| |||| |||||||||||||| |||||||||||
seq2  CCTTTTTTGTTTC--AAAATCTA-TTATATCTGTATTA-TTTTCTGTTAT  1037

seq1  GTTGTCTAAAATTTAAAAAATATAATT  1077
      |||| |||||| |||||||| |||| |
seq2  GTTG-CTAAAAATTAAAAAA-ATAAGT  1062