BAC Information

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BAC

Clone NameB6Ng01-059J08
Chromosome2 (Build37)
Map Location 160,269,203 - 160,427,463
singlet/doubletdoublet
Overlap geneLOC100043892
Upstream geneLOC100043689, Gm826, Mafb
Downstream geneTop1, Plcg1, Zhx3, Lpin3, Emilin3, Chd6, LOC100043693, LOC100043694, LOC383769, LOC629655, LOC383770, Ptprt
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-059J08.bB6Ng01-059J08.g
ACCDH880815DH880816
length9721,049
definitionDH880815|Mus musculus domesticus DNA, BAC clone: B6Ng01-059J08, 5' end.DH880816|Mus musculus domesticus DNA, BAC clone: B6Ng01-059J08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(160,426,881 - 160,427,463)(160,269,203 - 160,270,262)
sequence
gaattcacaaagatccacttacctctttctcctgagtgctgggattaagt
ctggctggtacacctccctccttccccttcccctacccagagtttctcag
tgtagccctggttgtcctggaactcaagctgtggaccaggctggccttga
actcagagatctgcctgtgtctgcctcttgagtgctgggattaaagacgt
gcaccactgacatctggcatggggctccagttttgttttgttttataaaa
tttatttgcttgtttgttttatatgagtacactgtacctctcttcggaca
ctccagaagagggcatcagaacccattacagatggttgtgagccaccatg
tggttgctgggaattgaactcaggacctctggaagagccatctctccagc
ccagtgctccatttttatgtgggtgttggagattcatgtacatctacgtg
ccacgtgcatgcctggtccacttggaagccagaagaagtccttggatctc
ctggaactggagttacagatggttacatctgccatgtttgtgctgggaac
cccacctgggtcctctgggagtaaccactgagccaactcaactctccagc
tgaaacgaacagcagtttttataatcaaacttttagtcaggtgtgccacc
ctacataattttaaccccagcggtctggaaggagagacaggcagatctcc
tagtctgagtccagcttgctctacttgtgagtttcagaccagctgtggag
catacagaaactttgtctcaaaaccaatgaaacagaaatcacactctgta
acagggttctttgttacatgccgaggaactgcagttgggaactatgaatt
tactttttgtatctaaagcactacattcctatgagcgctataagctgtgt
ccctaataaaagcattgcatttcatgacatgtgtgtgagttgcagatctg
acccaagctgtttgggcagcgt
gaattcacagttcattgcgtgggcagattcagtgggaccatctcctgcgt
gttgcttcctctgtgcaattactactaaaattcatcaaacggaactgaga
ggttttaacgccggtaattgtggtgcaaaacgctctgtaattggtctcac
aaatgaagctggggaacgccactggaaatgcagccctgcccgacccagga
gcagctagctcaagagcgctcgccctagaagccttctgggcccctctact
gagaccccactgttagttcccgggtctgtgctggtgagttcttgctcgcc
aggaccttagctcgtggagagtggggctttatctgcaggtcccaaccccc
acctcccagggttgccatttctcacctctgggtcttcacttttcccattc
cttccttctccagccctcactctcatttcctacatctgccctccctgggc
agagacagctgattcctgattccctactctgtcttgggcccctctaacac
aggagatttctaccaaagcttctcctgctgttaatgaagtgcttgttcta
acaaggggaggattttagttcaaatgccaacagcagagagcttgggagga
tgtagtcagtgtaatagagtgcttgtctatagtctgcacagaggcctgcg
ttctatccccagcatggtgtaaatcccaatatgagatttatgggggactg
gaaagatggttcagcggttaaaattttgctttttgccaggtgatgctggc
acatggaggcagaggcaggcagatctctgagttcgaggccagccttgttt
acagtgaattccaggacaatcaaggctacacagtgacaccacccaccacc
aacaacaaaatttttgcttttcttccagaggactcaaaatcggtttccat
catccgcagagtgcagcctacagccagctgcctgcactcagctcagaaaa
tctgatgctttcttgtagtagcctaggtactgcatcctgtggatatgcca
cacacagtacacaccaattatgattaaaaaattaaacatttagcagcat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_160426881_160427463
seq2: B6Ng01-059J08.b_44_626 (reverse)

seq1  GCTCAGTGGTTACTCCCAGAGGACCCAGGTGGGGTTCCCAGCACAAACAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAGTGGTTACTCCCAGAGGACCCAGGTGGGGTTCCCAGCACAAACAT  50

seq1  GGCAGATGTAACCATCTGTAACTCCAGTTCCAGGAGATCCAAGGACTTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGATGTAACCATCTGTAACTCCAGTTCCAGGAGATCCAAGGACTTCT  100

seq1  TCTGGCTTCCAAGTGGACCAGGCATGCACGTGGCACGTAGATGTACATGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGCTTCCAAGTGGACCAGGCATGCACGTGGCACGTAGATGTACATGA  150

seq1  ATCTCCAACACCCACATAAAAATGGAGCACTGGGCTGGAGAGATGGCTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCCAACACCCACATAAAAATGGAGCACTGGGCTGGAGAGATGGCTCT  200

seq1  TCCAGAGGTCCTGAGTTCAATTCCCAGCAACCACATGGTGGCTCACAACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGAGGTCCTGAGTTCAATTCCCAGCAACCACATGGTGGCTCACAACC  250

seq1  ATCTGTAATGGGTTCTGATGCCCTCTTCTGGAGTGTCCGAAGAGAGGTAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTAATGGGTTCTGATGCCCTCTTCTGGAGTGTCCGAAGAGAGGTAC  300

seq1  AGTGTACTCATATAAAACAAACAAGCAAATAAATTTTATAAAACAAAACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTACTCATATAAAACAAACAAGCAAATAAATTTTATAAAACAAAACA  350

seq1  AAACTGGAGCCCCATGCCAGATGTCAGTGGTGCACGTCTTTAATCCCAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGGAGCCCCATGCCAGATGTCAGTGGTGCACGTCTTTAATCCCAGC  400

seq1  ACTCAAGAGGCAGACACAGGCAGATCTCTGAGTTCAAGGCCAGCCTGGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAAGAGGCAGACACAGGCAGATCTCTGAGTTCAAGGCCAGCCTGGTC  450

seq1  CACAGCTTGAGTTCCAGGACAACCAGGGCTACACTGAGAAACTCTGGGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCTTGAGTTCCAGGACAACCAGGGCTACACTGAGAAACTCTGGGTA  500

seq1  GGGGAAGGGGAAGGAGGGAGGTGTACCAGCCAGACTTAATCCCAGCACTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAAGGGGAAGGAGGGAGGTGTACCAGCCAGACTTAATCCCAGCACTC  550

seq1  AGGAGAAAGAGGTAAGTGGATCTTTGTGAATTC  583
      |||||||||||||||||||||||||||||||||
seq2  AGGAGAAAGAGGTAAGTGGATCTTTGTGAATTC  583

seq1: chr2_160269203_160270262
seq2: B6Ng01-059J08.g_67_1115

seq1  GAATTCACAGTTCATTGCGTGGGCAGATTCAGTGGGACCATCTCCTGCGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAGTTCATTGCGTGGGCAGATTCAGTGGGACCATCTCCTGCGT  50

seq1  GTTGCTTCCTCTGTGCAATTACTACTAAAATTCATCAAACGGAACTGAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCTTCCTCTGTGCAATTACTACTAAAATTCATCAAACGGAACTGAGA  100

seq1  GGTTTTAACGCCGGTAATTGTGGTGCAAAACGCTCTGTAATTGGTCTCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTAACGCCGGTAATTGTGGTGCAAAACGCTCTGTAATTGGTCTCAC  150

seq1  AAATGAAGCTGGGGAACGCCACTGGAAATGCAGCCCTGCCCGACCCAGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAAGCTGGGGAACGCCACTGGAAATGCAGCCCTGCCCGACCCAGGA  200

seq1  GCAGCTAGCTCAAGAGCGCTCGCCCTAGAAGCCTTCTGGGCCCCTCTACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCTAGCTCAAGAGCGCTCGCCCTAGAAGCCTTCTGGGCCCCTCTACT  250

seq1  GAGACCCCACTGTTAGTTCCCGGGTCTGTGCTGGTGAGTTCTTGCTCGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACCCCACTGTTAGTTCCCGGGTCTGTGCTGGTGAGTTCTTGCTCGCC  300

seq1  AGGACCTTAGCTCGTGGAGAGTGGGGCTTTATCTGCAGGTCCCAACCCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACCTTAGCTCGTGGAGAGTGGGGCTTTATCTGCAGGTCCCAACCCCC  350

seq1  ACCTCCCAGGGTTGCCATTTCTCACCTCTGGGTCTTCACTTTTCCCATTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCCCAGGGTTGCCATTTCTCACCTCTGGGTCTTCACTTTTCCCATTC  400

seq1  CTTCCTTCTCCAGCCCTCACTCTCATTTCCTACATCTGCCCTCCCTGGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTTCTCCAGCCCTCACTCTCATTTCCTACATCTGCCCTCCCTGGGC  450

seq1  AGAGACAGCTGATTCCTGATTCCCTACTCTGTCTTGGGCCCCTCTAACAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACAGCTGATTCCTGATTCCCTACTCTGTCTTGGGCCCCTCTAACAC  500

seq1  AGGAGATTTCTACCAAAGCTTCTCCTGCTGTTAATGAAGTGCTTGTTCTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGATTTCTACCAAAGCTTCTCCTGCTGTTAATGAAGTGCTTGTTCTA  550

seq1  ACAAGGGGAGGATTTTAGTTCAAATGCCAACAGCAGAGAGCTTGGGAGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGGGGAGGATTTTAGTTCAAATGCCAACAGCAGAGAGCTTGGGAGGA  600

seq1  TGTAGTCAGTGTAATAGAGTGCTTGTCTATAGTCTGCACAGAGGCCTGCG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGTCAGTGTAATAGAGTGCTTGTCTATAGTCTGCACAGAGGCCTGCG  650

seq1  TTCTATCCCCAGCATGGTGTAAATCCCAATATGAGATTTATGGGGGACTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATCCCCAGCATGGTGTAAATCCCAATATGAGATTTATGGGGGACTG  700

seq1  GAAAGATGGTTCAGCGGTTAAAATTTTGCTTTTTGCCAGGTGATGCTGGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGATGGTTCAGCGGTTAAAATTTTGCTTTTTGCCAGGTGATGCTGGC  750

seq1  ACATGGAGGCAGAGGCAGGCAGATCTCTGAGTTCGAGGCCAGCCTTGTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGGAGGCAGAGGCAGGCAGATCTCTGAGTTCGAGGCCAGCCTTGTTT  800

seq1  ACAGTGAATTCCAGGACAATCAAGGCTACACAGTGACACCACCCACCACC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGAATTCCAGGACAATCAAGGCTACACAGTGACACCACCCACCACC  850

seq1  AACAACAAAATTTTTGCTTTTCTTCCAGAGGACTCAAAATCGGTTTCCAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAACAAAATTTTTGCTTTTCTTCCAGAGGACTCAAAATCGGTTTCCAT  900

seq1  CATCCGCAGAGTGCAGCCTACAGCCAGCTGCCTGCAACTCCAGCTCCAGA  950
      ||||||||||||||||||||||||||||||||||| ||| ||||| ||||
seq2  CATCCGCAGAGTGCAGCCTACAGCCAGCTGCCTGC-ACT-CAGCT-CAGA  947

seq1  GAATCTGATGCTTTCTTGTAGTAGCCTAGGGTACCTGCATCCCTGTGCAT  1000
       ||||||||||||||||||||||||||| |||| |||||| |||||| ||
seq2  AAATCTGATGCTTTCTTGTAGTAGCCTA-GGTA-CTGCAT-CCTGTGGAT  994

seq1  ATGCCACACACAGATACACACACATATATATGATTAAAAAAATTAAACAT  1050
      ||||||||||||| |||||||  ||   ||||||| ||||||||||||||
seq2  ATGCCACACACAG-TACACACCAAT---TATGATT-AAAAAATTAAACAT  1039

seq1  TTAGCAGCAT  1060
      ||||||||||
seq2  TTAGCAGCAT  1049