BAC Information

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BAC

Clone NameB6Ng01-059N01
Chromosome2 (Build37)
Map Location 83,642,192 - 83,758,415
singlet/doubletdoublet
Overlap geneItgav, D430039N05Rik, Zswim2
Upstream geneLOC433440, Fsip2, LOC545429, Ppia-ps2_981.1, LOC100040818, LOC668077, Zc3h15, Dnmt3l-ps1
Downstream geneLOC668096, LOC668100, LOC545432, LOC668107, LOC668113, LOC668115, LOC668119, LOC383725, Calcrl, Tfpi, LOC672763, Ctnnd1, 2700094K13Rik, Txndc14, Med19, Zdhhc5, Clp1, Ypel4, Serping1, Ube2l6, Smtnl1, Timm10, Slc43a1, Rtn4rl2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-059N01.bB6Ng01-059N01.g
ACCDH880981DH880982
length1,0021,116
definitionDH880981|Mus musculus domesticus DNA, BAC clone: B6Ng01-059N01, 5' end.DH880982|Mus musculus domesticus DNA, BAC clone: B6Ng01-059N01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(83,642,192 - 83,643,190)(83,757,294 - 83,758,415)
sequence
gaattcccttacaagaacctgccgatcgaggatctcttcaactctacact
agtaagtcaccggcttcagagcacggatacctgccgtgcaaacaccttag
tgattttagtggaagtttaactagaacaagtgaaaagataagttattgga
gaggattatagaatggaaagcattctctttctttttttaaattacatttg
ttgttgctgaggagggtcacgtatcacagtgtgcaggtcagaggacagct
tttcagaactgattctgggacgtgaggattggaccttggatatgaggtgt
ggtgaccagggcctttagctgacgagtcatcccaccgacccaggctctgg
tcccttggtgttcttgtacttcattgtcctagaattagtagagctggccc
tttttctttagcacttggtgctgtgtaacagggtttttttttttaactgt
ataccaaatttgtcaggggatattttggggttactttctccccacagtta
taaggttggaaactaactactaactactaactaactactgctaagtaaac
atattttgaagatatctaagtattgaaaataggatcagctgccatgatct
gtattgggaaatttactagtcatttcaatttaaatctgatgtcaacctat
tgtcagagtcttgtgtgtgcgcttttgtgtgtgtgtgtacgcatgtgcta
tggatgcctaacgtgcactcactaaatgattgtatgagaaaaagaacgtg
gtgtgactaccactaaatttattattaaaagaaagttgagtactcactga
ctaggccagtgagctatttaagactcagtgtgttttctgcaacaggtcac
cactaacatcacctggggcattcagccggcgcccatgcctgtgcctgggg
tgggtggatctcttggcagttctcgcagggctgctgctactggctgtgtg
ggtttttgttatgtacagggtttagttattgggcgttgaagggggtaggg
gg
gaattcaaagtaatggatgttgctcagtgttccattggttaaaccagtgt
tgagaaagagtgtaaagccattctagtaaacccacagcaggatgtgagat
ctcttagtaatttgatattgtaatgtggtaaagtagatattctaaaatga
gtattttacaatatattgttaatatgaagccttgattgatttaatcagaa
aacaattcttaatgatttacaaagtaacatctacttttttccccgccaat
ttcagaaaagaaaccaaagatggagatcagtagaaaaaagatcagaagtc
atgaaatatttaaatactgaaaatgagggtgaagcaaagccgggatgttt
tcaagaaaagcaggggtaagagtctcagtgaagttcacacttttctggtg
tgacaggattggtaaaaaaaatttttttaatttaaacggattatatgtgt
tctttggtttcaaatttgttgaacaattgcacatgtatcccaagtaccat
ttcacatcccagcaaagggcaagggtcttgtgtcagcccactcaaatcca
gtcctagtcaagcacacactatcaagatggctttggggatacaaacttca
cttctctctgcacatttttcccgttttaaaagatggataacattgtgcca
ttgtgggtatgtatctgtacagtaatgggaaacatgaacttttttgttga
ctatgtgaataaggtccatatctcctttaactctgcttttgttcttgaat
gccattctgtctgtctcaccagtttctaatggcactgagaaccagttatt
tcaatctgtcatcttatgataattgtacttttaacattgcactgttagtc
tcaccataagggggtaagcacggaattctctcacaaactgtcatctacca
attgccatcactatccttgagtatttgagcttactgctgtgcaactcatc
tgttgacaagtaagctggtttgtgtctctaatggtatgtctaattattga
ctctccaatgttgtctttatttgacttgaaagtataacaaaaatccaatc
aatatttctacttgaatgtggctaagtaaacggtgttatgaaatcagcct
aacagattccggatct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_83642192_83643190
seq2: B6Ng01-059N01.b_44_1045

seq1  GAATTCCCTTACAAGAACCTGCCGATCGAGGATCTCTTCAACTCTACACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTTACAAGAACCTGCCGATCGAGGATCTCTTCAACTCTACACT  50

seq1  AGTAAGTCACCGGCTTCAGAGCACGGATACCTGCCGTGCAAACACCTTAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAGTCACCGGCTTCAGAGCACGGATACCTGCCGTGCAAACACCTTAG  100

seq1  TGATTTTAGTGGAAGTTTAACTAGAACAAGTGAAAAGATAAGTTATTGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTTAGTGGAAGTTTAACTAGAACAAGTGAAAAGATAAGTTATTGGA  150

seq1  GAGGATTATAGAATGGAAAGCATTCTCTTTCTTTTTTTAAATTACATTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGATTATAGAATGGAAAGCATTCTCTTTCTTTTTTTAAATTACATTTG  200

seq1  TTGTTGCTGAGGAGGGTCACGTATCACAGTGTGCAGGTCAGAGGACAGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGCTGAGGAGGGTCACGTATCACAGTGTGCAGGTCAGAGGACAGCT  250

seq1  TTTCAGAACTGATTCTGGGACGTGAGGATTGGACCTTGGATATGAGGTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGAACTGATTCTGGGACGTGAGGATTGGACCTTGGATATGAGGTGT  300

seq1  GGTGACCAGGGCCTTTAGCTGACGAGTCATCCCACCGACCCAGGCTCTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGACCAGGGCCTTTAGCTGACGAGTCATCCCACCGACCCAGGCTCTGG  350

seq1  TCCCTTGGTGTTCTTGTACTTCATTGTCCTAGAATTAGTAGAGCTGGCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTGGTGTTCTTGTACTTCATTGTCCTAGAATTAGTAGAGCTGGCCC  400

seq1  TTTTTCTTTAGCACTTGGTGCTGTGTAACAGGGTTTTTTTTTTTAACTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTTTAGCACTTGGTGCTGTGTAACAGGGTTTTTTTTTTTAACTGT  450

seq1  ATACCAAATTTGTCAGGGGATATTTTGGGGTTACTTTCTCCCCACAGTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCAAATTTGTCAGGGGATATTTTGGGGTTACTTTCTCCCCACAGTTA  500

seq1  TAAGGTTGGAAACTAACTACTAACTACTAACTAACTACTGCTAAGTAAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGTTGGAAACTAACTACTAACTACTAACTAACTACTGCTAAGTAAAC  550

seq1  ATATTTTGAAGATATCTAAGTATTGAAAATAGGATCAGCTGCCATGATCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTGAAGATATCTAAGTATTGAAAATAGGATCAGCTGCCATGATCT  600

seq1  GTATTGGGAAATTTACTAGTCATTTCAATTTAAATCTGATGTCAACCTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTGGGAAATTTACTAGTCATTTCAATTTAAATCTGATGTCAACCTAT  650

seq1  TGTCAGAGTCTTGTGTGTGCGCTTTTGTGTGTGTGTGTACGCATGTGCTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAGAGTCTTGTGTGTGCGCTTTTGTGTGTGTGTGTACGCATGTGCTA  700

seq1  TGGATGCCTAACGTGCACTCACTAAATGATTGTATGAGAAAAAGAACGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATGCCTAACGTGCACTCACTAAATGATTGTATGAGAAAAAGAACGTG  750

seq1  GTGTGACTACCACTAAATTTATTATTAAAAGAAAGTTGAGTACTCACTGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGACTACCACTAAATTTATTATTAAAAGAAAGTTGAGTACTCACTGA  800

seq1  CTAGGCCAGTGAGCTATTTAAGACTCAGTGTGTTTTCTGCAACAGGTCAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGCCAGTGAGCTATTTAAGACTCAGTGTGTTTTCTGCAACAGGTCAC  850

seq1  CACTAACATCACCTGGGGCATTCAGCCGGCGCCCATGCCTGTGCCT-GTG  899
      |||||||||||||||||||||||||||||||||||||||||||||| | |
seq2  CACTAACATCACCTGGGGCATTCAGCCGGCGCCCATGCCTGTGCCTGGGG  900

seq1  TGGGT-GATCATCTTGGCAGTTCTCGCAGGGCTGCTGCTACTGGCTGTGT  948
      ||||| |||| |||||||||||||||||||||||||||||||||||||||
seq2  TGGGTGGATC-TCTTGGCAGTTCTCGCAGGGCTGCTGCTACTGGCTGTGT  949

seq1  TGGTATTTGTAATGTACAGGG--TAAGTAATGGGCGTTGAAGGGGGTAGG  996
       ||| ||||| ||||||||||  ||  || ||||||||||||||||||||
seq2  GGGTTTTTGTTATGTACAGGGTTTAGTTATTGGGCGTTGAAGGGGGTAGG  999

seq1  GGG  999
      |||
seq2  GGG  1002

seq1: chr2_83757294_83758415
seq2: B6Ng01-059N01.g_66_1181 (reverse)

seq1  AGATCCGGAATCTGGTAGGGCTGATATCATAACACCGTTTAACTTAGCCA  50
      |||||||||||||| || ||||||| |||||||||||||| |||||||||
seq2  AGATCCGGAATCTGTTA-GGCTGATTTCATAACACCGTTT-ACTTAGCCA  48

seq1  CA-TCAAGTAGAAATATTGATGTGATTTTTGTTTATACTTTCAAGTCAAT  99
      || ||||||||||||||||||  |||||||| ||||||||||||||||| 
seq2  CATTCAAGTAGAAATATTGATTGGATTTTTG-TTATACTTTCAAGTCAA-  96

seq1  AAAAAGACAACATTTGGAGAGTCAAATAATTAGACATACATTTAGAGAAC  149
      | |||||||||| |||||||||| |||||||||||||||  |||||| ||
seq2  ATAAAGACAACA-TTGGAGAGTC-AATAATTAGACATACCATTAGAG-AC  143

seq1  ACAAACCAGCTTACTTGTCAACAGATGAGGTGCACAGCAGTAAGCTCAAA  199
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  ACAAACCAGCTTACTTGTCAACAGATGAGTTGCACAGCAGTAAGCTCAAA  193

seq1  TACTCAAGGATAGTGATGGCAATTGGTAGATGACAGTTTGTGAGAGAATT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCAAGGATAGTGATGGCAATTGGTAGATGACAGTTTGTGAGAGAATT  243

seq1  CCGTGCTTACCCCCTTATGGTGAGACTAACAGTGCAATGTTAAAAGTACA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTGCTTACCCCCTTATGGTGAGACTAACAGTGCAATGTTAAAAGTACA  293

seq1  ATTATCATAAGATGACAGATTGAAATAACTGGTTCTCAGTGCCATTAGAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATCATAAGATGACAGATTGAAATAACTGGTTCTCAGTGCCATTAGAA  343

seq1  ACTGGTGAGACAGACAGAATGGCATTCAAGAACAAAAGCAGAGTTAAAGG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGTGAGACAGACAGAATGGCATTCAAGAACAAAAGCAGAGTTAAAGG  393

seq1  AGATATGGACCTTATTCACATAGTCAACAAAAAAGTTCATGTTTCCCATT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATATGGACCTTATTCACATAGTCAACAAAAAAGTTCATGTTTCCCATT  443

seq1  ACTGTACAGATACATACCCACAATGGCACAATGTTATCCATCTTTTAAAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTACAGATACATACCCACAATGGCACAATGTTATCCATCTTTTAAAA  493

seq1  CGGGAAAAATGTGCAGAGAGAAGTGAAGTTTGTATCCCCAAAGCCATCTT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGAAAAATGTGCAGAGAGAAGTGAAGTTTGTATCCCCAAAGCCATCTT  543

seq1  GATAGTGTGTGCTTGACTAGGACTGGATTTGAGTGGGCTGACACAAGACC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGTGTGTGCTTGACTAGGACTGGATTTGAGTGGGCTGACACAAGACC  593

seq1  CTTGCCCTTTGCTGGGATGTGAAATGGTACTTGGGATACATGTGCAATTG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCCCTTTGCTGGGATGTGAAATGGTACTTGGGATACATGTGCAATTG  643

seq1  TTCAACAAATTTGAAACCAAAGAACACATATAATCCGTTTAAATTAAAAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAACAAATTTGAAACCAAAGAACACATATAATCCGTTTAAATTAAAAA  693

seq1  AATTTTTTTTACCAATCCTGTCACACCAGAAAAGTGTGAACTTCACTGAG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTTTTTACCAATCCTGTCACACCAGAAAAGTGTGAACTTCACTGAG  743

seq1  ACTCTTACCCCTGCTTTTCTTGAAAACATCCCGGCTTTGCTTCACCCTCA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTTACCCCTGCTTTTCTTGAAAACATCCCGGCTTTGCTTCACCCTCA  793

seq1  TTTTCAGTATTTAAATATTTCATGACTTCTGATCTTTTTTCTACTGATCT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAGTATTTAAATATTTCATGACTTCTGATCTTTTTTCTACTGATCT  843

seq1  CCATCTTTGGTTTCTTTTCTGAAATTGGCGGGGAAAAAAGTAGATGTTAC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTTTGGTTTCTTTTCTGAAATTGGCGGGGAAAAAAGTAGATGTTAC  893

seq1  TTTGTAAATCATTAAGAATTGTTTTCTGATTAAATCAATCAAGGCTTCAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTAAATCATTAAGAATTGTTTTCTGATTAAATCAATCAAGGCTTCAT  943

seq1  ATTAACAATATATTGTAAAATACTCATTTTAGAATATCTACTTTACCACA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAACAATATATTGTAAAATACTCATTTTAGAATATCTACTTTACCACA  993

seq1  TTACAATATCAAATTACTAAGAGATCTCACATCCTGCTGTGGGTTTACTA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAATATCAAATTACTAAGAGATCTCACATCCTGCTGTGGGTTTACTA  1043

seq1  GAATGGCTTTACACTCTTTCTCAACACTGGTTTAACCAATGGAACACTGA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGGCTTTACACTCTTTCTCAACACTGGTTTAACCAATGGAACACTGA  1093

seq1  GCAACATCCATTACTTTGAATTC  1122
      |||||||||||||||||||||||
seq2  GCAACATCCATTACTTTGAATTC  1116