BAC Information

Click to search

BAC

Clone NameB6Ng01-059O05
Chromosome2 (Build37)
Map Location 144,023,338 - 144,149,584
singlet/doubletdoublet
Overlap geneSnx5, 8430406I07Rik, Ovol2
Upstream geneLOC668915, LOC668916, Pcsk2, Bfsp1, LOC100043799, LOC100043534, Dstn, Rrbp1, 4930517K23Rik, LOC627160, EG433481
Downstream genePpia-ps2_1789.1, LOC635097, Csrp2bp, LOC100043552, 6330439K17Rik, Polr3f, Rbbp9, Sec23b, Gm561, Dtd1, 1700010M22Rik, Slc24a3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-059O05.bB6Ng01-059O05.g
ACCDH881035DH881036
length438166
definitionDH881035|Mus musculus domesticus DNA, BAC clone: B6Ng01-059O05, 5' end.DH881036|Mus musculus domesticus DNA, BAC clone: B6Ng01-059O05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(144,023,338 - 144,023,781)(144,149,430 - 144,149,584)
sequence
cttccctcttcatctcatctagtggagaaagaagttaagggggctggaga
gatggctcagccgttaaaggctacgctcacaaccaaaaatataagagaaa
gaagttaaggcatggagccagagaggtcatgcagaagttaagaacacaca
ctgcctttgcagagagccaggtctggtccctggtgcccatgttgggcagc
tcagaagtccagtctgtaactctagccccagcagatgcaaagccctcttc
tctcctctgcaggcagctgctgtgacatatgcacatatccacactcacac
acacataattaaaaataatatatatttttatattaaagtcagatttattc
gaaagttgctctcgggcaagagagctcactggccccatggacagaggcta
ggaaagtcgccatgggaagatggggaggagtgggggtg
tctctctcccatcagagaggcgaaaatttaaaagcaaagtaaggaactag
gaattttgatcaattatctttgtatgtgtatattttcctgttctggttaa
agtgtgtgtgtgtgtgtgtgagggtgtgtgtgtgtgtgtgtgtgtgtgtg
tgtgtgtgtgtatgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_144023338_144023781
seq2: B6Ng01-059O05.b_50_493

seq1  GAATTCCTTCCCTCTTCATCTCATCTAGTGGAGAAAGAAGTTAAGGGGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTCCCTCTTCATCTCATCTAGTGGAGAAAGAAGTTAAGGGGGC  50

seq1  TGGAGAGATGGCTCAGCCGTTAAAGGCTACGCTCACAACCAAAAATATAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGAGATGGCTCAGCCGTTAAAGGCTACGCTCACAACCAAAAATATAA  100

seq1  GAGAAAGAAGTTAAGGCATGGAGCCAGAGAGGTCATGCAGAAGTTAAGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAGAAGTTAAGGCATGGAGCCAGAGAGGTCATGCAGAAGTTAAGAA  150

seq1  CACACACTGCCTTTGCAGAGAGCCAGGTCTGGTCCCTGGTGCCCATGTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACTGCCTTTGCAGAGAGCCAGGTCTGGTCCCTGGTGCCCATGTTG  200

seq1  GGCAGCTCAGAAGTCCAGTCTGTAACTCTAGCCCCAGCAGATGCAAAGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGCTCAGAAGTCCAGTCTGTAACTCTAGCCCCAGCAGATGCAAAGCC  250

seq1  CTCTTCTCTCCTCTGCAGGCAGCTGCTGTGACATATGCACATATCCACAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCTCTCCTCTGCAGGCAGCTGCTGTGACATATGCACATATCCACAC  300

seq1  TCACACACACATAATTAAAAATAATATATATTTTTATATTAAAGTCAGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACACACACATAATTAAAAATAATATATATTTTTATATTAAAGTCAGAT  350

seq1  TTATTCGAAAGTTGCTCTCGGGCAAGAGAGCTCACTGGCCCCATGGACAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCGAAAGTTGCTCTCGGGCAAGAGAGCTCACTGGCCCCATGGACAG  400

seq1  AGGCTAGGAAAGTCGCCATGGGAAGATGGGGAGGAGTGGGGGTG  444
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTAGGAAAGTCGCCATGGGAAGATGGGGAGGAGTGGGGGTG  444

seq1: chr2_144149430_144149584
seq2: B6Ng01-059O05.g_76_225 (reverse)

seq1  CACACCACACACACATATACACAAACACACACCCTCACACACACACACAC  50
           |||||||||| | ||||| ||||||||||||||||||||||||||
seq2  -----CACACACACACACACACACACACACACCCTCACACACACACACAC  45

seq1  ACACTTTAACCAGAACAGGAAAATATACACATACAAAGATAATTGATCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTTTAACCAGAACAGGAAAATATACACATACAAAGATAATTGATCAA  95

seq1  AATTCCTAGTTCCTTACTTTGCTTTTAAATTTTCGCCTCTCTGATGGGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCCTAGTTCCTTACTTTGCTTTTAAATTTTCGCCTCTCTGATGGGAG  145

seq1  AGAGA  155
      |||||
seq2  AGAGA  150