BAC Information

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BAC

Clone NameB6Ng01-060A16
Chromosome2 (Build37)
Map Location 151,774,371 - 151,887,979
singlet/doubletdoublet
Overlap gene5430432M24Rik, 2310046K01Rik, Scrt2
Upstream gene4930519N13Rik, LOC668926, Nanp, LOC433486, LOC381390, 4930442J19Rik, LOC100043839, LOC100043840, 4921509C19Rik, Nsfl1c, Fkbp1a, Sdcbp2, Snph, LOC668929, BC052486, 5430405G05Rik, Psmf1, Rspo4, Angpt4
Downstream geneSrxn1, Tcf15, LOC100043843, Csnk2a1, Tbc1d20, Rbck1, Trib3, LOC628060, Nrsn2, Sox12, Zcchc3, 6820408C15Rik, EG629114, LOC668930, 9230107O10Rik, 9230002F21Rik, EG654457, OTTMUSG00000015852, Defb29, 4930525K10Rik, Defb19, OTTMUSG00000015859, Defb36, OTTMUSG00000015862, Rem1, H13, Mcts2, Id1, LOC629170, Cox4i2, Bcl2l1, Tpx2, Mylk2, Fkhl18, Dusp15, Ttll9, Pdrg1, Xkr7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-060A16.bB6Ng01-060A16.g
ACCDH881139DH881140
length8151,063
definitionDH881139|Mus musculus domesticus DNA, BAC clone: B6Ng01-060A16, 5' end.DH881140|Mus musculus domesticus DNA, BAC clone: B6Ng01-060A16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(151,887,346 - 151,887,979)(151,774,371 - 151,775,435)
sequence
gaattcttcctgttctagcatgatggatcacatttagattcaggcagcag
actaggggctgtcagtgtgatgagcagcgatgaactttaaatttggattt
tttcctaattagtcagaggttgggcccctattcagttgtttgaatcttta
gatggcttttctctttgattatcattgttttattgatctgtgggagtgct
ttagatattttgggtgatgattttttgttggtcaaacatctctcatcttg
tggcttgctttccccctcccttcccctcacttccttcttcccaccctctc
ctccttctccccgtcctcattttccccacccacccaccaccacttatttt
ttgaagtggggtctcattgtgtagtccactctataatccagattttaaaa
aagaggataacagagctggggagatggctcagtgaagacctgagctcaga
tccccagaaacagtaatacacatttcctatgatgagggcaaaggagaatc
tccagaaggtcacaggtcagctattctcacgtagtcatcagtgtacaaga
gaccctgtctcaagatgtaaagtgagggccagcactagaggttgtcctct
gccctccatacatgaacatgcacacacacatgcacacacacacacacaca
cacacacacacacacacacacacgtatatatgatcataggttttgaatta
tatagatgtgcatgtgtagaatgtgatgtggtatatgtgtgtgagtgtga
gacaaggtgtgctatattgatatataccttgagacaaggtatgtgagtgt
ggggagggggtgtgg
gaattccacttcctcttctctgtctcttaccgctgtccctgtcccaacct
ccctgctccccaatttttgcctcgggtagcagtttagccccaggttgcct
tggataatcaaggacctgaggtgtcctgcccagaggccccaggaatgatt
ctgaagagccttggttctctctgggagtcaatgtctcatgaagcacctgc
taacctctgacagccccgaggacagcagtgccaacccaccacagctgctg
ttggagtccggcagggacagggatggcttggagagcaggctgaatctcct
ggaggctgcagttcctgcaaacaggatcgggaatgtttgcagctgaaatt
cctaccccaaatctttgatccttcttcttgcctccactcggtgtcctatc
atttctgtggtgaagggagaaaaaggttcatgcaggtgcacagccattca
ctccagctcaccttccttccttcagctctctggagacatgtgtccaccta
ccataaaaaaactaaagtgctgtccttgctgcccatcacaaggctaacag
aactttctggaaggatctccaaaccaggctgttctcattggtgcctggtg
ggtccccagaggaggcagccagacagcacacactgttcctgagagcactg
catgaggccagtaaaggctgttgctatactggagttcactgtgttcatac
cacggacctaaccaaagacaagagggaaggtggctcttaggggagggagg
gaggaaacaggcagccttcattggaagggtcccacagtgacttcagaaat
ggattctctggttttccttcccattactgtctgtgtgagcctttgctact
ctcttttaaagatgctttgggaagcagataaattgttgtcttggcaactg
catcagcagcctctttgatagagcagtttttcagagatgtgcagcgttgg
acctgctgggttcatctggagctcactcattctttatgggtgcattccct
tgtacagctgtgaatggatgaagacctacctgaccagcctgggtggggca
tgagatggaacaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_151887346_151887979
seq2: B6Ng01-060A16.b_45_678 (reverse)

seq1  TGCATGTGTGTGTGCATGTTCATGTATGGAGGGCAGAGGACAACCTCTAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATGTGTGTGTGCATGTTCATGTATGGAGGGCAGAGGACAACCTCTAG  50

seq1  TGCTGGCCCTCACTTTACATCTTGAGACAGGGTCTCTTGTACACTGATGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGCCCTCACTTTACATCTTGAGACAGGGTCTCTTGTACACTGATGA  100

seq1  CTACGTGAGAATAGCTGACCTGTGACCTTCTGGAGATTCTCCTTTGCCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACGTGAGAATAGCTGACCTGTGACCTTCTGGAGATTCTCCTTTGCCCT  150

seq1  CATCATAGGAAATGTGTATTACTGTTTCTGGGGATCTGAGCTCAGGTCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATAGGAAATGTGTATTACTGTTTCTGGGGATCTGAGCTCAGGTCTT  200

seq1  CACTGAGCCATCTCCCCAGCTCTGTTATCCTCTTTTTTAAAATCTGGATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGAGCCATCTCCCCAGCTCTGTTATCCTCTTTTTTAAAATCTGGATT  250

seq1  ATAGAGTGGACTACACAATGAGACCCCACTTCAAAAAATAAGTGGTGGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAGTGGACTACACAATGAGACCCCACTTCAAAAAATAAGTGGTGGTG  300

seq1  GGTGGGTGGGGAAAATGAGGACGGGGAGAAGGAGGAGAGGGTGGGAAGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGGTGGGGAAAATGAGGACGGGGAGAAGGAGGAGAGGGTGGGAAGAA  350

seq1  GGAAGTGAGGGGAAGGGAGGGGGAAAGCAAGCCACAAGATGAGAGATGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGTGAGGGGAAGGGAGGGGGAAAGCAAGCCACAAGATGAGAGATGTT  400

seq1  TGACCAACAAAAAATCATCACCCAAAATATCTAAAGCACTCCCACAGATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCAACAAAAAATCATCACCCAAAATATCTAAAGCACTCCCACAGATC  450

seq1  AATAAAACAATGATAATCAAAGAGAAAAGCCATCTAAAGATTCAAACAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAACAATGATAATCAAAGAGAAAAGCCATCTAAAGATTCAAACAAC  500

seq1  TGAATAGGGGCCCAACCTCTGACTAATTAGGAAAAAATCCAAATTTAAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATAGGGGCCCAACCTCTGACTAATTAGGAAAAAATCCAAATTTAAAG  550

seq1  TTCATCGCTGCTCATCACACTGACAGCCCCTAGTCTGCTGCCTGAATCTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATCGCTGCTCATCACACTGACAGCCCCTAGTCTGCTGCCTGAATCTA  600

seq1  AATGTGATCCATCATGCTAGAACAGGAAGAATTC  634
      ||||||||||||||||||||||||||||||||||
seq2  AATGTGATCCATCATGCTAGAACAGGAAGAATTC  634

seq1: chr2_151774371_151775435
seq2: B6Ng01-060A16.g_66_1128

seq1  GAATTCCACTTCCTCTTCTCTGTCTCTTACCGCTGTCCCTGTCCCAACCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACTTCCTCTTCTCTGTCTCTTACCGCTGTCCCTGTCCCAACCT  50

seq1  CCCTGCTCCCCAATTTTTGCCTCGGGTAGCAGTTTAGCCCCAGGTTGCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGCTCCCCAATTTTTGCCTCGGGTAGCAGTTTAGCCCCAGGTTGCCT  100

seq1  TGGATAATCAAGGACCTGAGGTGTCCTGCCCAGAGGCCCCAGGAATGATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATAATCAAGGACCTGAGGTGTCCTGCCCAGAGGCCCCAGGAATGATT  150

seq1  CTGAAGAGCCTTGGTTCTCTCTGGGAGTCAATGTCTCATGAAGCACCTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGAGCCTTGGTTCTCTCTGGGAGTCAATGTCTCATGAAGCACCTGC  200

seq1  TAACCTCTGACAGCCCCGAGGACAGCAGTGCCAACCCACCACAGCTGCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCTCTGACAGCCCCGAGGACAGCAGTGCCAACCCACCACAGCTGCTG  250

seq1  TTGGAGTCCGGCAGGGACAGGGATGGCTTGGAGAGCAGGCTGAATCTCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAGTCCGGCAGGGACAGGGATGGCTTGGAGAGCAGGCTGAATCTCCT  300

seq1  GGAGGCTGCAGTTCCTGCAAACAGGATCGGGAATGTTTGCAGCTGAAATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGCTGCAGTTCCTGCAAACAGGATCGGGAATGTTTGCAGCTGAAATT  350

seq1  CCTACCCCAAATCTTTGATCCTTCTTCTTGCCTCCACTCGGTGTCCTATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACCCCAAATCTTTGATCCTTCTTCTTGCCTCCACTCGGTGTCCTATC  400

seq1  ATTTCTGTGGTGAAGGGAGAAAAAGGTTCATGCAGGTGCACAGCCATTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTGTGGTGAAGGGAGAAAAAGGTTCATGCAGGTGCACAGCCATTCA  450

seq1  CTCCAGCTCACCTTCCTTCCTTCAGCTCTCTGGAGACATGTGTCCACCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGCTCACCTTCCTTCCTTCAGCTCTCTGGAGACATGTGTCCACCTA  500

seq1  CCATAAAAAAACTAAAGTGCTGTCCTTGCTGCCCATCACAAGGCTAACAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAAAAAAACTAAAGTGCTGTCCTTGCTGCCCATCACAAGGCTAACAG  550

seq1  AACTTTCTGGAAGGATCTCCAAACCAGGCTGTTCTCATTGGTGCCTGGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTCTGGAAGGATCTCCAAACCAGGCTGTTCTCATTGGTGCCTGGTG  600

seq1  GGTCCCCAGAGGAGGCAGCCAGACAGCACACACTGTTCCTGAGAGCACTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCCCAGAGGAGGCAGCCAGACAGCACACACTGTTCCTGAGAGCACTG  650

seq1  CATGAGGCCAGTAAAGGCTGTTGCTATACTGGAGTTCACTGTGTTCATAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAGGCCAGTAAAGGCTGTTGCTATACTGGAGTTCACTGTGTTCATAC  700

seq1  CACGGACCTAACCAAAGACAAGAGGGAAGGTGGCTCTTAGGGGAGGGAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGGACCTAACCAAAGACAAGAGGGAAGGTGGCTCTTAGGGGAGGGAGG  750

seq1  GAGGAAACAGGCAGCCTTCATTGGAAGGGTCCCACAGTGACTTCAGAAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAAACAGGCAGCCTTCATTGGAAGGGTCCCACAGTGACTTCAGAAAT  800

seq1  GGATTCTCTGGTTTTCCTTCCCATTACTGTCTGTGTGAGCCTTTGCTACT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTCTCTGGTTTTCCTTCCCATTACTGTCTGTGTGAGCCTTTGCTACT  850

seq1  CTCTTTTAAAGATGCTTTGGGAAGCAGATAAATTGTTGCCTTGGCAACTG  900
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  CTCTTTTAAAGATGCTTTGGGAAGCAGATAAATTGTTGTCTTGGCAACTG  900

seq1  CATCAGCAGCCTCTTTGATAGAGCAGTTTTTCAGAGATGTGCAGCGTTGG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAGCAGCCTCTTTGATAGAGCAGTTTTTCAGAGATGTGCAGCGTTGG  950

seq1  ACCTGCTGGGTTCATCT-GAGCTCACTCATTCTGTATGGGTGCATTCACT  999
      ||||||||||||||||| ||||||||||||||| ||||||||||||| ||
seq2  ACCTGCTGGGTTCATCTGGAGCTCACTCATTCTTTATGGGTGCATTCCCT  1000

seq1  TGTACAGCTGTGAATGGTTGAAGACCTACCTGGACCAGGCCTGGTGGGGT  1049
      ||||||||||||||||| ||||||||||||| |||||| |  ||||||| 
seq2  TGTACAGCTGTGAATGGATGAAGACCTACCT-GACCAGCCTGGGTGGGGC  1049

seq1  AATGGAGATGGAACAA  1065
      |   ||||||||||||
seq2  A--TGAGATGGAACAA  1063