BAC Information

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BAC

Clone NameB6Ng01-060C09
Chromosome2 (Build37)
Map Location 16,757,621 - 16,809,329
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC625457, Plxdc2
Downstream gene4930515L03Rik, LOC383665, Nebl, LOC100041319, LOC100041047
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-060C09.bB6Ng01-060C09.g
ACCDH881212DH881213
length1,1391,059
definitionDH881212|Mus musculus domesticus DNA, BAC clone: B6Ng01-060C09, 5' end.DH881213|Mus musculus domesticus DNA, BAC clone: B6Ng01-060C09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(16,757,621 - 16,758,781)(16,808,258 - 16,809,329)
sequence
gaattcattcgagattcagaaagtgcctaaagcaatagagctttcagcac
accctactagaaaacagccatctaaaaaagcattttccaagattctaccc
tgaagatgtagaaaggctgctagggctgtgttccaagggggccgggctac
atttcaagctgcttgcacaaactgttatcatacatcatgaaaatggtgct
ggatcagcagagctgcaaatttcaggacttgagactgtcatggaggcttg
cagacattccagaaaccctgtgaagttagacagtgcatattatagccata
tactttgtatgcagctcttgatagaccatgggaagcaatgaaggtgagct
ctaagttgcattggagatcccaagatgtcaagaatgtccaagagagaggt
caaaagtagtgcagaaatataactgggaaagtgaaattgcccaggctgac
agtgcccagacaatggcaccttgttttccagatgatgggtgtggagctgc
ttatgctagcaaatgtggctaatgtctaggttagggaattctgaggacca
tctgtcaaggctattgtcatttttctaaggccattagatcttctaaacca
tttctcccttaagtttctcagctcccttctctctctctttctcccccact
ctccctctgtccctcatctagtagatatggtttcctaaagcaatcattta
tcaacatataattgattcccttaaaaagaaatcagattcacacttctttc
cagaataggcctttctgtgtctttagatatccggtaagatgcttgagaaa
cattgcccttaatttctaaaattccttttacttaaaggatctatgatcct
taagcccaggccttttgattctcatgagtcctacatagtcacacctggaa
atctctctgaagtcttaatatagactcctagagccatgctgagatttaat
accctgttattctagagtgcctcagatttggtctctaccccgaagctatt
tctgacaatttttttttcctgagagcaaataggttattttcatagtaaaa
gtttctaaacttacactgaagtactgtgttgttgaaggtagttggctttc
ctccttatttaccttgttactaatggaatgctggctttc
gaattcttttagaaaatgtaacttccaatatcattttgagaaagggaggc
tacagagctcagtgaatattttattttctatgggaaataattttaaaata
gctttataaaatcctttctgtgaactgaatgagttattaaataactgaat
acgttattagaagcaaggcatgcacacctcatttccatcctcattcgtat
agtaaccaccagtctcttggtgagtgtgtgtatggatgtgtgggctgaga
taatgattcacggtaacaatacatttttttgttttattattttctgacat
tgactaataatacttatagagtttatacttaatgtatatgaccatactga
tggaaatttaatctcttattttatttcatttgtatgaaagattccataca
cataatattttcattttctttactttctgaaatgtactttaggtttcata
ccaagttatattttcacataatagcctttttacatttaaaatgaaacaat
tatgctatcatgttataatattttctgcagaagcaattaactcagagtaa
atattaacaaatgtctttaaaaataggccataagaaaaataagtgatatt
cataaaagcacttcttttagttgtaatacttaaaaatttctatttgccac
aaaaaataatttttgtgatttaaacttcttttacttcatttatttcttac
tacatatagatgaaataatgggctgttctatttttatagccatggaaaga
atgttcatgtgctaaaaatctaaaaaatttcaacatccagctcagactca
gtttcaaagtatagtggctcaagggagtaaattgtatttaattattttta
tgtctttgaggacatattgattttctttgtagtgttcttttctttcagaa
aatagtcatttaaaaattgctgtgccttgtaagtacaggcataaaagtgt
gctggtcacacacacacacaattccgagttgaattctattttagttgttg
cttctgtatgcataatttcacctaaaagaaataatagactgcatagacat
ctataatga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_16757621_16758781
seq2: B6Ng01-060C09.b_46_1184

seq1  GAATTCATTCGAGATTCAGAAAGTGCCTAAAGCAATAGAGCTTTCAGCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTCGAGATTCAGAAAGTGCCTAAAGCAATAGAGCTTTCAGCAC  50

seq1  ACCCTACTAGAAAACAGCCATCTAAAAAAGCATTTTCCAAGATTCTACCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTACTAGAAAACAGCCATCTAAAAAAGCATTTTCCAAGATTCTACCC  100

seq1  TGAAGATGTAGAAAGGCTGCTAGGGCTGTGTTCCAAGGGGGCCGGGCTAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGATGTAGAAAGGCTGCTAGGGCTGTGTTCCAAGGGGGCCGGGCTAC  150

seq1  ATTTCAAGCTGCTTGCACAAACTGTTATCATACATCATGAAAATGGTGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCAAGCTGCTTGCACAAACTGTTATCATACATCATGAAAATGGTGCT  200

seq1  GGATCAGCAGAGCTGCAAATTTCAGGACTTGAGACTGTCATGGAGGCTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCAGCAGAGCTGCAAATTTCAGGACTTGAGACTGTCATGGAGGCTTG  250

seq1  CAGACATTCCAGAAACCCTGTGAAGTTAGACAGTGCATATTATAGCCATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACATTCCAGAAACCCTGTGAAGTTAGACAGTGCATATTATAGCCATA  300

seq1  TACTTTGTATGCAGCTCTTGATAGACCATGGGAAGCAATGAAGGTGAGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTGTATGCAGCTCTTGATAGACCATGGGAAGCAATGAAGGTGAGCT  350

seq1  CTAAGTTGCATTGGAGATCCCAAGATGTCAAGAATGTCCAAGAGAGAGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGTTGCATTGGAGATCCCAAGATGTCAAGAATGTCCAAGAGAGAGGT  400

seq1  CAAAAGTAGTGCAGAAATATAACTGGGAAAGTGAAATTGCCCAGGCTGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGTAGTGCAGAAATATAACTGGGAAAGTGAAATTGCCCAGGCTGAC  450

seq1  AGTGCCCAGACAATGGCACCTTGTTTTCCAGATGATGGGTGTGGAGCTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCCCAGACAATGGCACCTTGTTTTCCAGATGATGGGTGTGGAGCTGC  500

seq1  TTATGCTAGCAAATGTGGCTAATGTCTAGGTTAGGGAATTCTGAGGACCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGCTAGCAAATGTGGCTAATGTCTAGGTTAGGGAATTCTGAGGACCA  550

seq1  TCTGTCAAGGCTATTGTCATTTTTCTAAGGCCATTAGATCTTCTAAACCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCAAGGCTATTGTCATTTTTCTAAGGCCATTAGATCTTCTAAACCA  600

seq1  TTTCTCCCTTAAGTTTCTCAGCTCCCTTCTCTCTCTCTTTCTCCCCCACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCCCTTAAGTTTCTCAGCTCCCTTCTCTCTCTCTTTCTCCCCCACT  650

seq1  CTCCCTCTGTCCCTCATCTAGTAGATATGGTTTCCTAAAGCAATCATTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTCTGTCCCTCATCTAGTAGATATGGTTTCCTAAAGCAATCATTTA  700

seq1  TCAACATATAATTGATTCCCTTAAAAAGAAATCAGATTCACACTTCTTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACATATAATTGATTCCCTTAAAAAGAAATCAGATTCACACTTCTTTC  750

seq1  CAGAATAGGCCTTTCTGTGTCTTTAGATATCCGGTAAGATGCTTGAGAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATAGGCCTTTCTGTGTCTTTAGATATCCGGTAAGATGCTTGAGAAA  800

seq1  CATTGCCCTTAATTTCTAAAATTCCTTTTACTTAAAGGATCTATGATCCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGCCCTTAATTTCTAAAATTCCTTTTACTTAAAGGATCTATGATCCT  850

seq1  TAAGCCCAGGCCTTTTGATTCTCATGAGTCCTACATAGTCACACCTGGAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCCCAGGCCTTTTGATTCTCATGAGTCCTACATAGTCACACCTGGAA  900

seq1  ATCTCTCTGAAGTCTTAATATAGACTCCTAGAGCCATGCTGAGATTTAAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTCTGAAGTCTTAATATAGACTCCTAGAGCCATGCTGAGATTTAAT  950

seq1  ACCCTGTTATTCTAGGAGTGCCTCAGATTTGGTCTCTACCCCGAAGCTAT  1000
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  ACCCTGTTATTCTA-GAGTGCCTCAGATTTGGTCTCTACCCCGAAGCTAT  999

seq1  TTCTGACAATTTTTTTTTCCTGAGAGCAAAATAGTTTATTTTCAATAGTA  1050
      ||||||||||||||||||||||||||| |||||| |||||||| ||||||
seq2  TTCTGACAATTTTTTTTTCCTGAGAGC-AAATAGGTTATTTTC-ATAGTA  1047

seq1  AAAGTTTCTAAACTTACATTGAAAAGTTAACTGTTGTTGTTTGTAGGTTA  1100
      |||||||||||||||||| ||  ||||  |||| ||||| ||| ||||  
seq2  AAAGTTTCTAAACTTACACTG--AAGT--ACTG-TGTTG-TTGAAGGT--  1089

seq1  AGTTTGGCTTTCTCTTCCTTTATTTTACCTTGTTTACCTAAAATGGAAAT  1150
      || |||||||  || |||||   ||||||||| ||||    |||||||  
seq2  AG-TTGGCTT--TCCTCCTT--ATTTACCTTG-TTAC---TAATGGAA--  1128

seq1  GGCTGGCTTTC  1161
       ||||||||||
seq2  TGCTGGCTTTC  1139

seq1: chr2_16808258_16809329
seq2: B6Ng01-060C09.g_68_1126 (reverse)

seq1  TCATTAAATAGATGTCTATGCAGTCTTATTATTTCTTTTAGTGAAAATTA  50
      |||||  |||||||||||||||||| |||||||||||||||   ||||||
seq2  TCATT--ATAGATGTCTATGCAGTC-TATTATTTCTTTTAGGTGAAATTA  47

seq1  TGACAATACAGAAGCAAACAACTAAAATTAGAATTCAACTCGGAATTGTG  100
      ||   |||||||||| ||||||||||| ||||||||||||||||||||||
seq2  TG--CATACAGAAGC-AACAACTAAAA-TAGAATTCAACTCGGAATTGTG  93

seq1  TGTGTGTGTGACCAGCGACACTTTTATGCCTGTACTTGACAAAGGCACAG  150
      |||||||||||||||| |||||||||||||||||||| || |||||||||
seq2  TGTGTGTGTGACCAGC-ACACTTTTATGCCTGTACTT-AC-AAGGCACAG  140

seq1  CAATTTTTAAATGACTAATTTTCTGAAAGAAAAGAACACTACAAAGAAAA  200
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  CAATTTTTAAATGACT-ATTTTCTGAAAGAAAAGAACACTACAAAGAAAA  189

seq1  TCAATATGTCCTCAAAGACATAAAAATAATTAAATACAATTTACTCCCTT  250
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TCAATATGTCCTCAAAGACATAAAAATAATTAAATACAATTTACTCCC-T  238

seq1  TGAGCCACTATACTTTGAAACTGAGTTCTGAGCTGGATGTTGAAATTTTT  300
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TGAGCCACTATACTTTGAAACTGAG-TCTGAGCTGGATGTTGAAATTTTT  287

seq1  TAGATTTTTAGCACATGAACATTCTTTCCATGGCTATAAAAATAGAACAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATTTTTAGCACATGAACATTCTTTCCATGGCTATAAAAATAGAACAG  337

seq1  CCCATTATTTCATCTATATGTAGTAAGAAATAAATGAAGTAAAAGAAGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATTATTTCATCTATATGTAGTAAGAAATAAATGAAGTAAAAGAAGTT  387

seq1  TAAATCACAAAAATTATTTTTTGTGGCAAATAGAAATTTTTAAGTATTAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATCACAAAAATTATTTTTTGTGGCAAATAGAAATTTTTAAGTATTAC  437

seq1  AACTAAAAGAAGTGCTTTTATGAATATCACTTATTTTTCTTATGGCCTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAAAAGAAGTGCTTTTATGAATATCACTTATTTTTCTTATGGCCTAT  487

seq1  TTTTAAAGACATTTGTTAATATTTACTCTGAGTTAATTGCTTCTGCAGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAAGACATTTGTTAATATTTACTCTGAGTTAATTGCTTCTGCAGAA  537

seq1  AATATTATAACATGATAGCATAATTGTTTCATTTTAAATGTAAAAAGGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTATAACATGATAGCATAATTGTTTCATTTTAAATGTAAAAAGGCT  587

seq1  ATTATGTGAAAATATAACTTGGTATGAAACCTAAAGTACATTTCAGAAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATGTGAAAATATAACTTGGTATGAAACCTAAAGTACATTTCAGAAAG  637

seq1  TAAAGAAAATGAAAATATTATGTGTATGGAATCTTTCATACAAATGAAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGAAAATGAAAATATTATGTGTATGGAATCTTTCATACAAATGAAAT  687

seq1  AAAATAAGAGATTAAATTTCCATCAGTATGGTCATATACATTAAGTATAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAAGAGATTAAATTTCCATCAGTATGGTCATATACATTAAGTATAA  737

seq1  ACTCTATAAGTATTATTAGTCAATGTCAGAAAATAATAAAACAAAAAAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTATAAGTATTATTAGTCAATGTCAGAAAATAATAAAACAAAAAAAT  787

seq1  GTATTGTTACCGTGAATCATTATCTCAGCCCACACATCCATACACACACT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTGTTACCGTGAATCATTATCTCAGCCCACACATCCATACACACACT  837

seq1  CACCAAGAGACTGGTGGTTACTATACGAATGAGGATGGAAATGAGGTGTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAAGAGACTGGTGGTTACTATACGAATGAGGATGGAAATGAGGTGTG  887

seq1  CATGCCTTGCTTCTAATAACGTATTCAGTTATTTAATAACTCATTCAGTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCCTTGCTTCTAATAACGTATTCAGTTATTTAATAACTCATTCAGTT  937

seq1  CACAGAAAGGATTTTATAAAGCTATTTTAAAATTATTTCCCATAGAAAAT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAAAGGATTTTATAAAGCTATTTTAAAATTATTTCCCATAGAAAAT  987

seq1  AAAATATTCACTGAGCTCTGTAGCCTCCCTTTCTCAAAATGATATTGGAA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATTCACTGAGCTCTGTAGCCTCCCTTTCTCAAAATGATATTGGAA  1037

seq1  GTTACATTTTCTAAAAGAATTC  1072
      ||||||||||||||||||||||
seq2  GTTACATTTTCTAAAAGAATTC  1059