BAC Information

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BAC

Clone NameB6Ng01-060C15
Chromosome2 (Build37)3 (Build37)
Map Location 142,776,651 - 142,777,69817,729,873 - 17,730,933
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC668913, LOC668914, Kif16b
Downstream geneSnrpb2, Otor, LOC668915, LOC668916, Pcsk2, Bfsp1, LOC100043799, LOC100043534, Dstn, Rrbp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-060C15.bB6Ng01-060C15.g
ACCDH881221DH881222
length9471,075
definitionDH881221|Mus musculus domesticus DNA, BAC clone: B6Ng01-060C15, 5' end.DH881222|Mus musculus domesticus DNA, BAC clone: B6Ng01-060C15, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(142,776,651 - 142,777,698)(17,729,873 - 17,730,933)
sequence
gaattgtttgttcagttctgagccccatttttaatggggttatttgattt
tctgaagtccaccttcttgagttctttatatatgttggatattagtcccc
tatctgatttaggataggtaaatatcctttcccaatctgttggtggtctt
tttgtcttattgacggtgtcttttgccttgcagaaactttggagtttcat
taggtcccatttgtcaattctcgatcttacagcacaagccattgctgatc
agttcaggaatttttcccctgtgcccatatcttcaaggcttttccccact
ttctcctctataagtttcagtgtctctggttttatgtgaagttccttgat
ccacttagatttgaccttagtacaaggagataagtatggatcaattcgca
ttcttctacacgataacaaccagttgtgccagcaccaattgttgaatatg
ctgtctttcttccactggatggttttagctcccttgttgaagatcaagtg
accataggtgtgtgggttcatttctgggtcttcaattctattccattggt
ctacttgtctgtctctataccagtaccatgcagtttttatcacaattgct
ctgtagtaaagctttaggtctggcatggtgattctgccagaagttctttt
atccttgagaagactttttgctatcctaggttttttgttattccagacaa
atttgcaaattgctccttccaattcggtgaagaattgagttggaattttg
atggggattgcattgaatctgtagattgcttttggcaagatagccatttt
tacaatgttgatcctgccaatccatgagcatgggagatctttccatcttc
tgagatcttccttaatttctttcttcagagatttgaagtttttatcatac
agatctttcacttccttagttagagtcatgccaagatattttatatt
gaattccttttgatgggtttttggtacactctcaaagaatattgaaatta
cctatagtgtctgttacaacatactgttgtttctaatgtacagtggggta
aggttggattttcttcatatacttccacccaaactacatctcaaaacaga
tcaatgagggagacagacatgagcattctgctgtcttctattaatccaga
caccaaaagacatttgttaaagtatataataatgccaaacttgtcacaaa
atgcagatatttttagaaaaccttgatatttgttttaatatgttgtggtt
ttatgatacattttaatgatatacagtttcaatttcttctgtgatagact
ttgatagatataatttatattcataaacagtgtttgacatattcaattgt
taagggtttacaggaatgctgaaagcaaaagtgatatatctatctattca
tttgtctatcaaaaccccgaatattaagcaggcatgaaatccattcagct
cttttaattttaatgagtctgttttagcatcttaaatactgagtgcagaa
aaacatacaagtgactagaaagcaacaaagatattcgttgtaaaaataaa
aatatcaagagaagaagcatcgtagcttttattcaaaaatcctttgtgtg
aatgagttcaaagttcaaagttaaagtacagttttgcagcatgcagtttt
aaaaaacaaaccaagctaaaccagctaagcacaagcaactgaggtcttgt
ctgcccccatagttccgttggctagtttgctggcaagcctctcacatttc
ccaggccatttagcccctgaggctagcctgcacctgataaaatgatagca
ctagagacttgtaataaccagtcggatccataacagtaaatctccaaccc
caaatgcctccacaaagaacacaaaactcaagctgcacacctagactggg
caatgtacttacagtgcttatgcccatctatgaaatgcctagctacttgt
ggctcttcagaccacgtggggaagcccaatcttctctgatcatctttcct
cttctctttctctctcttctctctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_142776651_142777698
seq2: B6Ng01-060C15.b_42_628 (reverse)

seq1  AAAACTGCATGGTACTGGTATAGAGACAGACAAGTAGACCAATGGAATAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTGCATGGTACTGGTATAGAGACAGACAAGTAGACCAATGGAATAG  50

seq1  AATTGAAGACCCAGAAATGAACCCACACACCTATGGTCACTTGATCTTCG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  AATTGAAGACCCAGAAATGAACCCACACACCTATGGTCACTTGATCTTCA  100

seq1  ACAAGGGAGCTAAAACCATCCAGAGGAAGAAAGACAGCATTTTCAACAAT  150
      ||||||||||||||||||||||| |||||||||||||||| |||||||||
seq2  ACAAGGGAGCTAAAACCATCCAGTGGAAGAAAGACAGCATATTCAACAAT  150

seq1  TGGTGCTGGCACAACTGGTTGTTATCATGTAGAAGAATGGGAATCGATCC  200
      |||||||||||||||||||||||||| |||||||||||| |||| |||||
seq2  TGGTGCTGGCACAACTGGTTGTTATCGTGTAGAAGAATGCGAATTGATCC  200

seq1  ATACTTATCTCCTTGTACTAAGGTCAAATCTAAGTGGATCAAGGAACTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTTATCTCCTTGTACTAAGGTCAAATCTAAGTGGATCAAGGAACTTC  250

seq1  ACATAAAACCAGAGACACTGAAACTTATAGAGGAGAAAGTGGGGAAAAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAAAACCAGAGACACTGAAACTTATAGAGGAGAAAGTGGGGAAAAGC  300

seq1  CTTGAAGATATGGGCACAGGGGACAAATTCCTGAACAGAACAGCAATGGC  350
      ||||||||||||||||||||||| |||||||||||| || ||||||||||
seq2  CTTGAAGATATGGGCACAGGGGAAAAATTCCTGAACTGATCAGCAATGGC  350

seq1  TTGTGCTGTAAGATCGAGAATTGACAAATGGGACCTAATGAAACTCCAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGCTGTAAGATCGAGAATTGACAAATGGGACCTAATGAAACTCCAAA  400

seq1  GTTTCTGCAAGGCAAAAGACACCGTCAATAAGACAAAAAGACCACCAACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTGCAAGGCAAAAGACACCGTCAATAAGACAAAAAGACCACCAACA  450

seq1  GATTGGGAAAGGATCTTTACCTATCCTAAATCAGATAGGGGACTAATATC  500
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  GATTGGGAAAGGATATTTACCTATCCTAAATCAGATAGGGGACTAATATC  500

seq1  CAACATATATAAAGAACTCAAGAAGGTGGACTTCAGAAAATCAAATAACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACATATATAAAGAACTCAAGAAGGTGGACTTCAGAAAATCAAATAACC  550

seq1  CCATTAAAAAATGGGGCTCACA-------AAACCATCCAGTGGAAGAAAG  593
      ||||| |||||||||||||| |       |||| || |            
seq2  CCATT-AAAAATGGGGCTCAGAACTGAACAAACAATTC------------  587

seq1  ACAGCATTTTCAACAATTGGTGCTGGCACAACTGGTTGTTATCATGTAGA  643
                                                        
seq2  --------------------------------------------------  587

seq1  AGAATGCGAATCGATCCATACTTATCTCCTTGTACTAAGGTCAAATCTAA  693
                                                        
seq2  --------------------------------------------------  587

seq1  GTGGATCAAGGAACTTCACATAAAACCAGAGACACTGAAACTTATAGAGG  743
                                                        
seq2  --------------------------------------------------  587

seq1  AGAAAGTGGGGAAAAGCCTTGAAGATATGGGCACAGGGGAAAAATTCCTG  793
                                                        
seq2  --------------------------------------------------  587

seq1  AACAGAAGAGCAATGGCTTGTGCTGTAAGATCGAGAATTGACAAATGGGA  843
                                                        
seq2  --------------------------------------------------  587

seq1  CCTAATGAAACTCCAAAGTTTCTGCAAGGCAAAAGACACTGTCTATAAGA  893
                                                        
seq2  --------------------------------------------------  587

seq1  CAAAAAGACCACCAACAGACTGGGAAAGGATCTTTACCTATCCTAAATCA  943
                                                        
seq2  --------------------------------------------------  587

seq1  GATAGGGGACTAATATCCAACATATATAAAGAACTCAAGAAGGTGGACCT  993
                                                        
seq2  --------------------------------------------------  587

seq1  CAGAAAATCAAATAACCCCATTAAAAAATGGGGCTCAGAACTGAACAAAG  1043
                                                        
seq2  --------------------------------------------------  587

seq1  AATTC  1048
           
seq2  -----  587

seq1: chr3_17729873_17730933
seq2: B6Ng01-060C15.g_67_1141 (reverse)

seq1  ---------------GAGAGAGAAGATGGA-----ATCAGGAGAAGATAG  30
                     || |||||||| | |     |||| |||||||| |
seq2  GAGAGAGAAGAGAGAGAAAGAGAAGAGGAAAGATGATCA-GAGAAGATTG  49

seq1  AGCTTCCCCACGTGGTCTGGAAGAGCCACAAGTAGCTAGGCATTTCATAG  80
       ||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  GGCTTCCCCACGTGGTCT-GAAGAGCCACAAGTAGCTAGGCATTTCATAG  98

seq1  ATGGGCAATAAGCACTGTAAGGTACATTTGCCCAGTCTAGGTGTGCAGCT  130
      |||||| ||||||||||||| ||||| |||||||||||||||||||||||
seq2  ATGGGC-ATAAGCACTGTAA-GTACA-TTGCCCAGTCTAGGTGTGCAGCT  145

seq1  TGAGTTTTGTGTTCTTTGTGGAGGCATTTTGGGGTTGGAGATTTACTGTT  180
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TGAGTTTTGTGTTCTTTGTGGAGGCA-TTTGGGGTTGGAGATTTACTGTT  194

seq1  ATGGATCCGACTGGTTATTACAAGTCTCTAGTGCTATCATTTTATCAGGT  230
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGATCCGACTGGTTATTACAAGTCTCTAGTGCTATCATTTTATCAGGT  244

seq1  GCAGGCTAGCCTCAGGGGCTAAATGGCCTGGGAAATGTGAGAGGCTTGCC  280
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGCTAGCCTCAGGGGCTAAATGGCCTGGGAAATGTGAGAGGCTTGCC  294

seq1  AGCAAACTAGCCAACGGAACTATGGGGGCAGACAAGACCTCAGTTGCTTG  330
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAACTAGCCAACGGAACTATGGGGGCAGACAAGACCTCAGTTGCTTG  344

seq1  TGCTTAGCTGGTTTAGCTTGGTTTGTTTTTTAAAACTGCATGCTGCAAAA  380
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTAGCTGGTTTAGCTTGGTTTGTTTTTTAAAACTGCATGCTGCAAAA  394

seq1  CTGTACTTTAACTTTGAACTTTGAACTCATTCACACAAAGGATTTTTGAA  430
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTACTTTAACTTTGAACTTTGAACTCATTCACACAAAGGATTTTTGAA  444

seq1  TAAAAGCTACGATGCTTCTTCTCTTGATATTTTTATTTTTACAACGAATA  480
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGCTACGATGCTTCTTCTCTTGATATTTTTATTTTTACAACGAATA  494

seq1  TCTTTGTTGCTTTCTAGTCACTTGTATGTTTTTCTGCACTCAGTATTTAA  530
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGTTGCTTTCTAGTCACTTGTATGTTTTTCTGCACTCAGTATTTAA  544

seq1  GATGCTAAAACAGACTCATTAAAATTAAAAGAGCTGAATGGATTTCATGC  580
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCTAAAACAGACTCATTAAAATTAAAAGAGCTGAATGGATTTCATGC  594

seq1  CTGCTTAATATTCGGGGTTTTGATAGACAAATGAATAGATAGATATATCA  630
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTAATATTCGGGGTTTTGATAGACAAATGAATAGATAGATATATCA  644

seq1  CTTTTGCTTTCAGCATTCCTGTAAACCCTTAACAATTGAATATGTCAAAC  680
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGCTTTCAGCATTCCTGTAAACCCTTAACAATTGAATATGTCAAAC  694

seq1  ACTGTTTATGAATATAAATTATATCTATCAAAGTCTATCACAGAAGAAAT  730
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTTTATGAATATAAATTATATCTATCAAAGTCTATCACAGAAGAAAT  744

seq1  TGAAACTGTATATCATTAAAATGTATCATAAAACCACAACATATTAAAAC  780
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAACTGTATATCATTAAAATGTATCATAAAACCACAACATATTAAAAC  794

seq1  AAATATCAAGGTTTTCTAAAAATATCTGCATTTTGTGACAAGTTTGGCAT  830
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATCAAGGTTTTCTAAAAATATCTGCATTTTGTGACAAGTTTGGCAT  844

seq1  TATTATATACTTTAACAAATGTCTTTTGGTGTCTGGATTAATAGAAGACA  880
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATATACTTTAACAAATGTCTTTTGGTGTCTGGATTAATAGAAGACA  894

seq1  GCAGAATGCTCATGTCTGTCTCCCTCATTGATCTGTTTTGAGATGTAGTT  930
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAATGCTCATGTCTGTCTCCCTCATTGATCTGTTTTGAGATGTAGTT  944

seq1  TGGGTGGAAGTATATGAAGAAAATCCAACCTTACCCCACTGTACATTAGA  980
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTGGAAGTATATGAAGAAAATCCAACCTTACCCCACTGTACATTAGA  994

seq1  AACAACAGTATGTTGTAACAGACACTATAGGTAATTTCAATATTCTTTGA  1030
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAACAGTATGTTGTAACAGACACTATAGGTAATTTCAATATTCTTTGA  1044

seq1  GAGTGTACCAAAAACCCATCAAAAGGAATTC  1061
      |||||||||||||||||||||||||||||||
seq2  GAGTGTACCAAAAACCCATCAAAAGGAATTC  1075