BAC Information

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BAC

Clone NameB6Ng01-060D04
Chromosome2 (Build37)
Map Location 25,916,849 - 26,033,686
singlet/doubletdoublet
Overlap geneBtbd14a, C330006A16Rik
Upstream geneNelf, Entpd8, Noxa1, Nrarp, A830007P12Rik, A730008L03Rik, 4933433C11Rik, BC061039, Tubb2c, Slc34a3, Gm757, 2310002J15Rik, Rnf208, LOC100039232, Ndor1, C730025P13Rik, C430004E15Rik, Ssna1, Anapc2, 4930571C24Rik, BC004853, Grin1, Man1b1, Dpp7, Uap1l1, 2010317E24Rik, Entpd2, Npdc1, Fut7, Abca2, Clic3, BC029214, Ptgds, EG665070, Lcn12, C8g, Fbxw5, Traf2, Edf1, Mamdc4, Phpt1, Gm996, LOC100039887, B230208H17Rik, 4921530D09Rik, Tmem141, Fcna, Lcn8, Lcn5, LOC620709, Lcn10, Lcn13, Bmyc, LOC383678, Lcn3, Lcn11, LOC620858, Glt6d1, Lcn9, Sohlh1, Kcnt1, Camsap1, LOC100040100, LOC665199, Ubadc1
Downstream geneLhx3, Qscn6l1, C030048H21Rik, 4932418E24Rik, Gpsm1, D2Bwg1335e, Card9, Snapc4, Sdccag3, Pmpca, Inpp5e, AU024582, Notch1, Egfl7, Agpat2, B230317C12Rik, 5730588L14Rik, LOC100039446, Lcn4, LOC669582, Abo, Surf6, Surf5-ps, Surf5, Rpl7a, Surf1, Surf2, Surf4, Gm711, Rexo4, Adamts13, 5930434B04Rik, Slc2a6, LOC665315, 1110002H13Rik, Adamtsl2, C630035N08Rik, Dbh
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-060D04.bB6Ng01-060D04.g
ACCDH881243DH881244
length1,058242
definitionDH881243|Mus musculus domesticus DNA, BAC clone: B6Ng01-060D04, 5' end.DH881244|Mus musculus domesticus DNA, BAC clone: B6Ng01-060D04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(25,916,849 - 25,917,906)(26,033,445 - 26,033,686)
sequence
gaattcatcacacttggaaacctaccaaggacgttaacacctcgagacga
gttctacttgctgctcttttctctctcctggtcccggtgctataggccaa
agcaagcatgcaggacaggagccgatggcccagaatgaccctggggcctt
agcctgcctcggttgagatctcaagtccagatggattgattcctagagtc
tcccagacctaccctacgggagtgatcattcactgcccactcacgtttca
cagcgttcaggactcggctgtccagtggctttcggctcggatcactggtg
gaggagcgaatgccagtgccacagctgttggccagtgtgttcctggagga
gggataaggaaaggaggcagagttggtccagagcttcccgttcacatacc
aggtgaaagagctcatgtgtcgcacacccacccatgtgtcccctgaaaaa
gtatgtgtgtctcctgtgtcatgtacactctaagggacagaactcccagt
gagtgggcagcctgagtgacaagactaggaagctgactgtcccaggcatt
atccatgggaaatcctgagccccctgagtggcttgttttgccttagggaa
ggggctcttttgactcatgcacatggtagtgtacatagagcttttcactt
cctttggggaggggtacacagccagtatttcaccagactgggccctaata
tacaaggatctttccagagcctctctagggcatctccatatcagacgccc
acatctgtattaggaaaaagcagaaggctataaaagctcaaaccgttcat
gaccaatgcagctcacagctaccggaaaactctagaagcttctgcagccc
cctaaacacctacctgtcaaagaacgtggccaggagcctccgcagcagac
cttgtgcttcacccctgcacacaggtggcagttcatgagctggccacgtg
tgatgtagaccccggagcctaaagccagcagacatcaatgtggtgaggtc
tttagtctgataaactaaggcagggctcatgctcctctaagggggagggg
tggtgagg
atcagtcgtttgggaaagaggcatgtgcagtggacatgtgctatgtagtc
tttgctcaggctctccttgtccaccatcaagaaggcctaagggatataga
gaggtctgagaagtggctgcatctttaccgcccatgcgtgaaagtggctt
agatgaggacgtcaaggcaaatttcaccagaagtcaacctgagtcattca
cagctggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgattgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_25916849_25917906
seq2: B6Ng01-060D04.b_44_1101

seq1  GAATTCATCACACTTGGAAACCTACCAAGGACGTTAACACCTCGAGACGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCACACTTGGAAACCTACCAAGGACGTTAACACCTCGAGACGA  50

seq1  GTTCTACTTGCTGCTCTTTTCTCTCTCCTGGTCCCGGTGCTATAGGCCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTACTTGCTGCTCTTTTCTCTCTCCTGGTCCCGGTGCTATAGGCCAA  100

seq1  AGCAAGCATGCAGGACAGGAGCCGATGGCCCAGAATGACCCTGGGGCCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGCATGCAGGACAGGAGCCGATGGCCCAGAATGACCCTGGGGCCTT  150

seq1  AGCCTGCCTCGGTTGAGATCTCAAGTCCAGATGGATTGATTCCTAGAGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGCCTCGGTTGAGATCTCAAGTCCAGATGGATTGATTCCTAGAGTC  200

seq1  TCCCAGACCTACCCTACGGGAGTGATCATTCACTGCCCACTCACGTTTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGACCTACCCTACGGGAGTGATCATTCACTGCCCACTCACGTTTCA  250

seq1  CAGCGTTCAGGACTCGGCTGTCCAGTGGCTTTCGGCTCGGATCACTGGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCGTTCAGGACTCGGCTGTCCAGTGGCTTTCGGCTCGGATCACTGGTG  300

seq1  GAGGAGCGAATGCCAGTGCCACAGCTGTTGGCCAGTGTGTTCCTGGAGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGCGAATGCCAGTGCCACAGCTGTTGGCCAGTGTGTTCCTGGAGGA  350

seq1  GGGATAAGGAAAGGAGGCAGAGTTGGTCCAGAGCTTCCCGTTCACATACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATAAGGAAAGGAGGCAGAGTTGGTCCAGAGCTTCCCGTTCACATACC  400

seq1  AGGTGAAAGAGCTCATGTGTCGCACACCCACCCATGTGTCCCCTGAAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGAAAGAGCTCATGTGTCGCACACCCACCCATGTGTCCCCTGAAAAA  450

seq1  GTATGTGTGTCTCCTGTGTCATGTACACTCTAAGGGACAGAACTCCCAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGTGTGTCTCCTGTGTCATGTACACTCTAAGGGACAGAACTCCCAGT  500

seq1  GAGTGGGCAGCCTGAGTGACAAGACTAGGAAGCTGACTGTCCCAGGCATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGGGCAGCCTGAGTGACAAGACTAGGAAGCTGACTGTCCCAGGCATT  550

seq1  ATCCATGGGAAATCCTGAGCCCCCTGAGTGGCTTGTTTTGCCTTAGGGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCATGGGAAATCCTGAGCCCCCTGAGTGGCTTGTTTTGCCTTAGGGAA  600

seq1  GGGGCTCTTTTGACTCATGCACATGGTAGTGTACATAGAGCTTTTCACTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCTCTTTTGACTCATGCACATGGTAGTGTACATAGAGCTTTTCACTT  650

seq1  CCTTTGGGGAGGGGTACACAGCCAGTATTTCACCAGACTGGGCCCTAATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGGGGAGGGGTACACAGCCAGTATTTCACCAGACTGGGCCCTAATA  700

seq1  TACAAGGATCTTTCCAGAGCCTCTCTAGGGCATCTCCATATCAGACGCCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAGGATCTTTCCAGAGCCTCTCTAGGGCATCTCCATATCAGACGCCC  750

seq1  ACATCTGTATTAGGAAAAAGCAGAAGGCTATAAAAGCTCAAACCGTTCAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCTGTATTAGGAAAAAGCAGAAGGCTATAAAAGCTCAAACCGTTCAT  800

seq1  GACCAAGGCAGCTCACAGCTACCGGAAAACTCTAGAAGCTTCTGCAGCCC  850
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAATGCAGCTCACAGCTACCGGAAAACTCTAGAAGCTTCTGCAGCCC  850

seq1  CCTAAACACCTACCTGTCAAAGAAGGTGGCCAGGAGCCTCCGCAGCAGGA  900
      |||||||||||||||||||||||| |||||||||||||||||||||| ||
seq2  CCTAAACACCTACCTGTCAAAGAACGTGGCCAGGAGCCTCCGCAGCA-GA  899

seq1  CCTTGTGCTTCACCCCTGCACACAGGTGGCAGTTCATGAGCTGGCCACGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGTGCTTCACCCCTGCACACAGGTGGCAGTTCATGAGCTGGCCACGT  949

seq1  GTGATGTAGACCCCGGAGCCTAAAGCCAGCAGACATCAATGT-GTGAGGT  999
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  GTGATGTAGACCCCGGAGCCTAAAGCCAGCAGACATCAATGTGGTGAGGT  999

seq1  CTTTAGTCTGATAAACTAAGCCAGGGCTCATGC-CCTCTAAGGGGGGAGG  1048
      |||||||||||||||||||| |||||||||||| ||||||| ||||||||
seq2  CTTTAGTCTGATAAACTAAGGCAGGGCTCATGCTCCTCTAA-GGGGGAGG  1048

seq1  GGTGGTGAGG  1058
      ||||||||||
seq2  GGTGGTGAGG  1058

seq1: chr2_26033445_26033686
seq2: B6Ng01-060D04.g_73_314 (reverse)

seq1  ACAATCACACACACACACACACACACACACACACACCAGCTGTGAATGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATCACACACACACACACACACACACACACACACCAGCTGTGAATGAC  50

seq1  TCAGGTTGACTTCTGGTGAAATTTGCCTTGACGTCCTCATCTAAGCCACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGTTGACTTCTGGTGAAATTTGCCTTGACGTCCTCATCTAAGCCACT  100

seq1  TTCACGCATGGGCGGTAAAGATGCAGCCACTTCTCAGACCTCTCTATATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACGCATGGGCGGTAAAGATGCAGCCACTTCTCAGACCTCTCTATATC  150

seq1  CCTTAGGCCTTCTTGATGGTGGACAAGGAGAGCCTGAGCAAAGACTACAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAGGCCTTCTTGATGGTGGACAAGGAGAGCCTGAGCAAAGACTACAT  200

seq1  AGCACATGTCCACTGCACATGCCTCTTTCCCAAACGACTGAT  242
      ||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACATGTCCACTGCACATGCCTCTTTCCCAAACGACTGAT  242