BAC Information

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BAC

Clone NameB6Ng01-060F17
Chromosome5 (Build37)2 (Build37)
Map Location 17,501,223 - 17,502,360166,356,153 - 166,356,822
singlet/doubletsingletsinglet
Overlap geneGnat3
Upstream geneLOC626390, LOC668142, LOC100041749, LOC100041832, Speer4f, EG630927, Sema3c, Cd36
Downstream geneGnai1, LOC100041818, LOC668167
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-060F17.bB6Ng01-060F17.g
ACCDH881352DH881353
length1,1371,021
definitionDH881352|Mus musculus domesticus DNA, BAC clone: B6Ng01-060F17, 5' end.DH881353|Mus musculus domesticus DNA, BAC clone: B6Ng01-060F17, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(17,501,223 - 17,502,360)(166,356,153 - 166,356,822)
sequence
gaattcctgtaagcaatatatgtggatcacctgtgtcctacaacagatca
ggaattctcaacagctgtcaatattcaaagactgaaagtttagtagcaac
agcatttgacatttttaattacttctcaaacagacatgcaagtcttctat
tccgggatctgatatatctttttctctcttatttggaaatgtgattgcat
ggttcagaatgaattcaacaagattctaagtctgcccaaggcacataata
acaatgaagaatcattgtctcatttgtaaagaaacacttagcactaggaa
ggttgagaatcactgctttgggctacatggcgtcgaaaatgacctgtgac
ctttcaataccattcctcatgccatggggatcccccccaagcataaaatt
cttttcattgctacttcttctctataattttgctattgttatgacttaga
atgtaaatgcctgtttctgattgtcttgggaactcctgtgaaccctaaag
cgcagtaatcctcagggtttatttaaaatgaaattatagaggagtaaaaa
gcccttagtttttctagaattagcatatttgttactttggtttgcttgtt
caacaatattttagcaacacgtattttgttgctcatcagagtgtataaat
gaactaaaccacaaaagtctttgccattgtatacctatacactaaaaaaa
ccaataaagtaagaaggggaaaggcacttgaataaattctatgagtaaca
tgaaacaggggaaagtgtactttgagagtgctagaagaataaaaaggtag
agtaagattccttaagaatggttcaatcaaagggtccagggacacacaag
aacatgacccacattgtcaactgactagggacgcagacttgcagaaatca
gggagactatatgggtctgacataagtcctctactatgttgtgactgaat
agctaggaattcttgtaagattcctaacagtgggagcaggggctgtctct
gaccctttggactacttctgaggaccctattcttctactgggttgccttg
tccagcctgaatgtgacgtatgtgcctatccttattgtagcttgtttgat
gttcctggggaaatgtactcttttttgagggaaggca
gaattcatgcagttgaatccttctcaacagtctgttttatgggaaccttc
attaccataacctgcagttttggttccggaatgagggatcttccttgcgc
cggtgatggttaactcccgtcccgagttttcttgtattttctcgtctcgg
gttttttcttcccggattttctcgtcccggattttctcgtcccggatttt
ctcgtcccgggtttcggcaccaactcttaaacgcgttctcacgaccggcc
aggaagaacacaacaaaccagaatcttctgcggcaaaactttattgctta
catcttcaggagcaagagtgcaagcctcaaaccccttgcttacatcttta
ggagccagagcgccagagcgccagagcgccagagcgccagagcgagagct
ctattgtttacatctttaggagcaagcgagcaagagccagagccagagag
caaaagcgcaagagcgcaagcaagagagcgaatggcggaaaccccgtccc
ctttaaggagaattatccttcgcctaggacgcatcactccctgattggct
gcagcccatggccgagttgacgtcatgggaaaggcagagtacatggggta
gagaaatacccttggcacatgcgcagattatttgtttaccacttagaaca
caggatgtcagcgccatcttgtgacggcgaatgtgggggcggctcccaac
aatcatatagggtttcaatatatctacacacacagagagacacacatgtg
tatatatataaaatatatacacacatatgcatacatatttatgatgtatg
tgtgcatgaatgcatgcatgcatcatgtttctccaagactttactgattc
aattatttcccccttttcttttcttttctttcttttcttttcttttcttt
tcttttctttacttgtatttctctctctcatcgttgaaaggagaggcaca
aatcagttgtctaatgaaaccattcataaacatgaccacaatgtaatcta
aaagaattttcttaatgagca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_17501223_17502360
seq2: B6Ng01-060F17.b_46_1182

seq1  GAATTCCTGTAAGCAATATATGTGGATCACCTGTGTCCTACAACAGATCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGTAAGCAATATATGTGGATCACCTGTGTCCTACAACAGATCA  50

seq1  GGAATTCTCAACAGCTGTCAATATTCAAAGACTGAAAGTTTAGTAGCAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATTCTCAACAGCTGTCAATATTCAAAGACTGAAAGTTTAGTAGCAAC  100

seq1  AGCATTTGACATTTTTAATTACTTCTCAAACAGACATGCAAGTCTTCTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATTTGACATTTTTAATTACTTCTCAAACAGACATGCAAGTCTTCTAT  150

seq1  TCCGGGATCTGATATATCTTTTTCTCTCTTATTTGGAAATGTGATTGCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGGGATCTGATATATCTTTTTCTCTCTTATTTGGAAATGTGATTGCAT  200

seq1  GGTTCAGAATGAATTCAACAAGATTCTAAGTCTGCCCAAGGCACATAATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCAGAATGAATTCAACAAGATTCTAAGTCTGCCCAAGGCACATAATA  250

seq1  ACAATGAAGAATCATTGTCTCATTTGTAAAGAAACACTTAGCACTAGGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGAAGAATCATTGTCTCATTTGTAAAGAAACACTTAGCACTAGGAA  300

seq1  GGTTGAGAATCACTGCTTTGGGCTACATGGCGTCGAAAATGACCTGTGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGAGAATCACTGCTTTGGGCTACATGGCGTCGAAAATGACCTGTGAC  350

seq1  CTTTCAATACCATTCCTCATGCCATGGGGATCCCCCCCAAGCATAAAATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCAATACCATTCCTCATGCCATGGGGATCCCCCCCAAGCATAAAATT  400

seq1  CTTTTCATTGCTACTTCTTCTCTATAATTTTGCTATTGTTATGACTTAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCATTGCTACTTCTTCTCTATAATTTTGCTATTGTTATGACTTAGA  450

seq1  ATGTAAATGCCTGTTTCTGATTGTCTTGGGAACTCCTGTGAACCCTAAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAAATGCCTGTTTCTGATTGTCTTGGGAACTCCTGTGAACCCTAAAG  500

seq1  CGCAGTAATCCTCAGGGTTTATTTAAAATGAAATTATAGAGGAGTAAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCAGTAATCCTCAGGGTTTATTTAAAATGAAATTATAGAGGAGTAAAAA  550

seq1  GCCCTTAGTTTTTCTAGAATTAGCATATTTGTTACTTTGGTTTGCTTGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTTAGTTTTTCTAGAATTAGCATATTTGTTACTTTGGTTTGCTTGTT  600

seq1  CAACAATATTTTAGCAACACGTATTTTGTTGCTCATCAGAGTGTATAAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAATATTTTAGCAACACGTATTTTGTTGCTCATCAGAGTGTATAAAT  650

seq1  GAACTAAACCACAAAAGTCTTTGCCATTGTATACCTATACACTAAAAAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTAAACCACAAAAGTCTTTGCCATTGTATACCTATACACTAAAAAAA  700

seq1  CCAATAAAGTAAGAAGGGGAAAGGCACTTGAATAAATTCTATGAGTAACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATAAAGTAAGAAGGGGAAAGGCACTTGAATAAATTCTATGAGTAACA  750

seq1  TGAAACAGGGGAAAGTGTACTTTGAGAGTGCTAGAAGAATAAAAAGGTAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAACAGGGGAAAGTGTACTTTGAGAGTGCTAGAAGAATAAAAAGGTAG  800

seq1  AGTAAGATTCCTTAAGAATGGTTCAATCAAAGGGTCCAGGGACACACAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAGATTCCTTAAGAATGGTTCAATCAAAGGGTCCAGGGACACACAAG  850

seq1  AACATGACCCACATTGTCAACTGACTAGGGACGCAGACTTGCAGAAATCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATGACCCACATTGTCAACTGACTAGGGACGCAGACTTGCAGAAATCA  900

seq1  GGGAGACTATATGGGTCTGACATAAGTCCTCTACTATGTTGTGACTGAAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGACTATATGGGTCTGACATAAGTCCTCTACTATGTTGTGACTGAAT  950

seq1  AGCTAGGAATTCTTGTAAGATTCCTAACAGTGGGAGCAGGGGCTGTCTCT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAGGAATTCTTGTAAGATTCCTAACAGTGGGAGCAGGGGCTGTCTCT  1000

seq1  GACCCTTTGGACTACTTCTGAGGACCCTATTCTTCCTACTGGGTTGCCTT  1050
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  GACCCTTTGGACTACTTCTGAGGACCCTATTCTT-CTACTGGGTTGCCTT  1049

seq1  GTCCAGCCTTGATGTGACGGTATGTGCCTACTCTTATTGTAGCTTGTTTG  1100
      |||||||||  ||||||| |||||||||||  ||||||||||||||||||
seq2  GTCCAGCCTGAATGTGAC-GTATGTGCCTATCCTTATTGTAGCTTGTTTG  1098

seq1  ATGTCCCT-GGGAGATGTACTCCTTTTTGAGGGAAGGCA  1138
      |||| ||| |||| |||||||| ||||||||||||||||
seq2  ATGTTCCTGGGGAAATGTACTCTTTTTTGAGGGAAGGCA  1137

seq1: chr2_166356153_166356822
seq2: B6Ng01-060F17.g_67_767 (reverse)

seq1  TGTTGGGAGCCGCCCCCACATTTGCCGTCACAAGATGGCGCTGACATCCT  50
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TGTTGGGAGCCGCCCCCACATTCGCCGTCACAAGATGGCGCTGACATCCT  50

seq1  GTGTTCTAAGTGGTAAACAAATAATCTGCCCATGTGCCAAGGGTATTTTA  100
      ||||||||||||||||||||||||||||| ||||||||||||||||||  
seq2  GTGTTCTAAGTGGTAAACAAATAATCTGCGCATGTGCCAAGGGTATTTCT  100

seq1  TGACTACTTGTACTCTACCTTTCCCGTGACCGTCAGCTCGGCCATGGGCT  150
        ||  | |||||||| |||||||| ||| ||||| ||||||||||||||
seq2  CTACCCCATGTACTCTGCCTTTCCCATGA-CGTCAACTCGGCCATGGGCT  149

seq1  GCAGCCAATCAGGGAGTGATGCGTCCTAGGCGAAATATAACGCTCCTAAA  200
      ||||||||||||||||||||||||||||||||||  ||||  |||||   
seq2  GCAGCCAATCAGGGAGTGATGCGTCCTAGGCGAAGGATAATTCTCCT--T  197

seq1  AAAGGGGAC-GGGTTTCCGCCATT--CTCTCTCGCTGGC-----------  236
      ||||||||| ||||||||||||||  |||||| ||| ||           
seq2  AAAGGGGACGGGGTTTCCGCCATTCGCTCTCTTGCTTGCGCTCTTGCGCT  247

seq1  --ATCTCTCTGGCTCTGCGCGCCCTGCGCTCGCTCGCTGCCTAAAGATGT  284
          |||||||||||||   || ||  ||||||| ||| |||||||||||
seq2  TTTGCTCTCTGGCTCTG---GCTCT-TGCTCGCTTGCT-CCTAAAGATGT  292

seq1  AAACAATAGAGC----------ACGCTCT-ACGCTTTGGCGCGCCGGAGC  323
      ||||||||||||           ||||||  |||| |||||| | || ||
seq2  AAACAATAGAGCTCTCGCTCTGGCGCTCTGGCGCTCTGGCGCTCTGGCGC  342

seq1  TCTGGCTCCTAAAGATATTATAGAAGGGGTTTTCGCTTTTGGGGTTGGGG  373
      ||||||||||||||||  ||   |||||||              ||| ||
seq2  TCTGGCTCCTAAAGAT-GTAAGCAAGGGGT--------------TTGAGG  377

seq1  TTTTTGCACTCCTGCTCCTGAAGATGTAAGCAATAAAGTTTTGCCGCAGA  423
         |||||||| ||||||||||||||||||||||||||||||||||||||
seq2  --CTTGCACTCTTGCTCCTGAAGATGTAAGCAATAAAGTTTTGCCGCAGA  425

seq1  AGATTTTGGTTTGTTGCGTCTTTCCTGGCCGGTCGCGTGAGAACGCGATT  473
      ||||| |||||||||| ||  ||||||||||||  |||||||||||| ||
seq2  AGATTCTGGTTTGTTGTGTTCTTCCTGGCCGGT--CGTGAGAACGCGTTT  473

seq1  AAGAATTGGTGCCGAAACCCGGGAAGAGAAATTCCGGGACGAGAA-----  518
      |||| ||||||||||||||||||| |||||| |||||||||||||     
seq2  AAGAGTTGGTGCCGAAACCCGGGACGAGAAAATCCGGGACGAGAAAATCC  523

seq1  --------AAAATCCGGGAAGAAAAAACCCGGG-------------AGGA  547
              ||||||||||||||||||||||| |             || |
seq2  GGGACGAGAAAATCCGGGAAGAAAAAACCCGAGACGAGAAAATACAAGAA  573

seq1  AACTCGGGACGGGAGTT-----TCACCGGCGCAGGGAAGATCCCTCATTC  592
      |||||||||||||||||     ||||||||||| ||||||||||||||||
seq2  AACTCGGGACGGGAGTTAACCATCACCGGCGCAAGGAAGATCCCTCATTC  623

seq1  CAGAACCAGAACTGCGGGTCGCGGTAATAAAGGTTCCCGTAAAGCAGACT  642
      | |||||| |||||| |||   |||||| ||||||||| |||| ||||||
seq2  CGGAACCAAAACTGCAGGTTATGGTAATGAAGGTTCCCATAAAACAGACT  673

seq1  GTTAAGAAGGATTCAACTGCATGAATTC  670
      ||| ||||||||||||||||||||||||
seq2  GTTGAGAAGGATTCAACTGCATGAATTC  701