BAC Information

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BAC

Clone NameB6Ng01-060M10
Chromosome2 (Build37)
Map Location 50,384,594 - 50,499,962
singlet/doubletdoublet
Overlap genenone
Upstream geneEpc2, Kif5c, 2310010M24Rik, Lypd6, 2010311D03Rik, LOC666781
Downstream geneLOC227885, Rnd3, LOC666802, LOC666810, LOC100041614, Tas2r134
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-060M10.bB6Ng01-060M10.g
ACCDH881657DH881658
length1,1801,153
definitionDH881657|Mus musculus domesticus DNA, BAC clone: B6Ng01-060M10, 5' end.DH881658|Mus musculus domesticus DNA, BAC clone: B6Ng01-060M10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(50,498,779 - 50,499,962)(50,384,594 - 50,385,738)
sequence
gaattccaaaggcaactctaaaaattaaatacttacttcgatggtatgaa
ggacattgttgctattgtggtttggatgtgtatattgtatgtgttccctc
atatgctgggactttggccaccagagtggcaatgctgagaagcagtgaaa
tctttaggctatggagatcaatgcaaggtaactaggtctttaggtcattg
acaaggaggagattaatgcttgcctcctcaagtgaattagttcttgtcag
agtgagttgtcaaaagaagacatgcctagcctagatcctctctagctacc
tctttgttgtgctatctattgttcacttgcttgtgacactgtaaccttat
gctctatcatatgttcaacagaggctgaaaacatggggctgtccagtctt
ggctgttcatcctcccaaacggtgaactaaatgaacctcttctttctata
aaatgcttaggtttggataccttgcaaatcaatcaatcaatcaatcaatc
agttattcaataaataaaaaataaatagtgggcagatagaaaaataaaca
aataaaaaaatgacaggtatatgccaaaataaacaaataaaccaaaatca
gtaaggctaagcagtgaccagatataaaagaactgaaaggataaaagtag
agaaaacaatatctatttacaaaatgtgatgaaagtcagatcttcttgct
gagttgtggttaagttttccaattttggaataattacaaaaacaatcatt
ggaaataagcttctttcaaatacaaaattgagaaaagtatcaaaattgtg
ggtatcctggtacattgtaaagccttttctgaagacttttttcttcatct
ttgtgtgcttttcagtgtgactttgtagaccccctttagtgtggcagagt
ctactttcacatcctgagatcggagatgctcttgtgactgactttggccc
atagaactggttgtgagtgaaactgtgccaggtctcatgaggcctctgct
ttctctccttctcacctccccgaagatcatggaacccgcttgtggtagca
cacccgaagggacatgcatggaagaagatccatcttacttagagctaact
gcatactgtcaacaggcaaattccaaccaagcaattcggaaaggagcgcc
aggcataggacaaagaccacactcccctgc
gaattctgtgacccacccagcagaggagaaatttctttcttgtattattg
atataaagaaactcagctaacaaatctaaatcaggagctttgggcagtat
agctcagtaatagaacgtttatgtggcctagtacatgtgagtccctagac
ttaatgcccagtactgaaaaacaagacaaataaaacaaaacaagacgaaa
caaagcaagatgaacctaatccaaacaagagccaggggtgaccttgaatt
ggaaagacaatctaggctcagtcctgggagttctctagccaaccctctcc
cccttcctggctctcagaatgcttatggacactgctttagtcagggactg
gatggctcctatcctcaggtcaaaagccaggtcccaagcccaaagcttac
aaaaggtgtcttgagggcacttcaggtgaaagaggaaggctccaccatga
ctcatccaacacaggagctgttggttcacagcctttacaacccacatttt
ccaattcaatttaaaccacattctctttttctttttctttttctttttct
ttttctttttctttttctttttctttttctttttctttttctttttcttt
ttctttttctttttctttttctttttctttttcttttccttttccttttt
ctttttctttttctttttctttttctttttctttttctttttctttttct
tttccttttccttttcctttttttcttttttcttttttcttttttttttg
tttttgtttgtttgtttgtttgttttttgaggcagggtttctctgtatat
ccctggctgtcctggaactcaaacccctgccagggaaaaaaagctctttc
atatgaactctccaatgtgacagatcagaagggaaaaacagaaaagggaa
attttttctgataaaacaaagagtaaaacttgaaaaacaatttgtaattt
ggcacttgtaagatatggcactgtactggaagccctcagggcctcttcaa
cactgaaacatctccatgaccaaaaaaacacttctgcagacgatagccaa
ggtaacagaaaatcttaaactgcaaaatctgagaaggcgagtatttccag
agacattcaagaacaacaggttgaaaagtgaaatgaaaaattagagaaaa
ata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_50498779_50499962
seq2: B6Ng01-060M10.b_46_1225 (reverse)

seq1  GCAGGGGAGTTGTGCTGTTCTGTCCTATGCCTGGCTGCTCCCTTCTCGAA  50
      ||||||||| |||| | || ||||||||||||||| ||||| ||| ||||
seq2  GCAGGGGAG-TGTGGTCTT-TGTCCTATGCCTGGC-GCTCCTTTC-CGAA  46

seq1  TTGCTTGTGTTGGGAATTTGCCTGTTGACAGTATTGCAGTTAGCTCTAAG  100
      ||||||| ||| ||||||||||||||||||||| ||||||||||||||||
seq2  TTGCTTG-GTT-GGAATTTGCCTGTTGACAGTA-TGCAGTTAGCTCTAAG  93

seq1  TAAGATGATTCTTCTCTCATGCATGTCCC-TCGGGTGTGCTACCACAAGC  149
      |||||||  ||||||  |||||||||||| ||||||||||||||||||||
seq2  TAAGATGGATCTTCTTCCATGCATGTCCCTTCGGGTGTGCTACCACAAGC  143

seq1  GTGTTTCCATGATC-TCGGGGAGGTGAG-AGGAGAGAAAGCAGAGGCCTC  197
      | | |||||||||| ||||||||||||| |||||||||||||||||||||
seq2  G-GGTTCCATGATCTTCGGGGAGGTGAGAAGGAGAGAAAGCAGAGGCCTC  192

seq1  ATGAGACCTGGCACAGTGTCACTCACAACCAGTTCTATGGGCCAAAGTCA  247
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  ATGAGACCTGGCACAGTTTCACTCACAACCAGTTCTATGGGCCAAAGTCA  242

seq1  GTCACAAGAGCATCTCCGATCTCAGGATGTGAAAGTAGACTCTGCCACAC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACAAGAGCATCTCCGATCTCAGGATGTGAAAGTAGACTCTGCCACAC  292

seq1  TAAAGGGGGTCTACAAAGTCACACTGAAAAGCACACAAAGATGAAGAAAA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGGGGGTCTACAAAGTCACACTGAAAAGCACACAAAGATGAAGAAAA  342

seq1  AAGTCTTCAG-AAAGGCTTTACAATGTACCAGGATACCCACAATTTTGAT  396
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  AAGTCTTCAGAAAAGGCTTTACAATGTACCAGGATACCCACAATTTTGAT  392

seq1  ACTTTTCTCAATTTTGTATTTGAAAGAAGCTTATTTCCAATGATTGTTTT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTCTCAATTTTGTATTTGAAAGAAGCTTATTTCCAATGATTGTTTT  442

seq1  TGTAATTATTCCAAAATTGGAAAACTTAACCACAACTCAGCAAGAAGATC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAATTATTCCAAAATTGGAAAACTTAACCACAACTCAGCAAGAAGATC  492

seq1  TGACTTTCATCACATTTTGTAAATAGATATTGTTTTCTCTACTTTTATCC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTTCATCACATTTTGTAAATAGATATTGTTTTCTCTACTTTTATCC  542

seq1  TTTCAGTTCTTTTATATCTGGTCACTGCTTAGCCTTACTGATTTTGGTTT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGTTCTTTTATATCTGGTCACTGCTTAGCCTTACTGATTTTGGTTT  592

seq1  ATTTGTTTATTTTGGCATATACCTGTCATTTTTTTATTTGTTTATTTTTC  646
      ||||||||||||||||||||||||||||||||||                
seq2  ATTTGTTTATTTTGGCATATACCTGTCATTTTTTNNNNNNNNNNNNNNNN  642

seq1  TATCTGCCCACTATTTATTTTTTATTTATTGAATAACTGATTGATTGATT  696
        ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  NNTCTGCCCACTATTTATTTTTTATTTATTGAATAACTGATTGATTGATT  692

seq1  GATTGATTGATTTGCAAGGTATCCAAACCTAAGCATTTTATAGAAAGAAG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGATTGATTTGCAAGGTATCCAAACCTAAGCATTTTATAGAAAGAAG  742

seq1  AGGTTCATTTAGTTCACCGTTTGGGAGGATGAACAGCCAAGACTGGACAG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTCATTTAGTTCACCGTTTGGGAGGATGAACAGCCAAGACTGGACAG  792

seq1  CCCCATGTTTTCAGCCTCTGTTGAACATATGATAGAGCATAAGGTTACAG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCATGTTTTCAGCCTCTGTTGAACATATGATAGAGCATAAGGTTACAG  842

seq1  TGTCACAAGCAAGTGAACAATAGATAGCACAACAAAGAGGTAGCTAGAGA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCACAAGCAAGTGAACAATAGATAGCACAACAAAGAGGTAGCTAGAGA  892

seq1  GGATCTAGGCTAGGCATGTCTTCTTTTGACAACTCACTCTGACAAGAACT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCTAGGCTAGGCATGTCTTCTTTTGACAACTCACTCTGACAAGAACT  942

seq1  AATTCACTTGAGGAGGCAAGCATTAATCTCCTCCTTGTCAATGACCTAAA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCACTTGAGGAGGCAAGCATTAATCTCCTCCTTGTCAATGACCTAAA  992

seq1  GACCTAGTTACCTTGCATTGATCTCCATAGCCTAAAGATTTCACTGCTTC  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTAGTTACCTTGCATTGATCTCCATAGCCTAAAGATTTCACTGCTTC  1042

seq1  TCAGCATTGCCACTCTGGTGGCCAAAGTCCCAGCATATGAGGGAACACAT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCATTGCCACTCTGGTGGCCAAAGTCCCAGCATATGAGGGAACACAT  1092

seq1  ACAATATACACATCCAAACCACAATAGCAACAATGTCCTTCATACCATCG  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATATACACATCCAAACCACAATAGCAACAATGTCCTTCATACCATCG  1142

seq1  AAGTAAGTATTTAATTTTTAGAGTTGCCTTTGGAATTC  1184
      ||||||||||||||||||||||||||||||||||||||
seq2  AAGTAAGTATTTAATTTTTAGAGTTGCCTTTGGAATTC  1180

seq1: chr2_50384594_50385738
seq2: B6Ng01-060M10.g_68_1220

seq1  GAATTCTGTGACCCACCCAGCAGAGGAGAAATTTCTTTCTTGTATTATTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTGACCCACCCAGCAGAGGAGAAATTTCTTTCTTGTATTATTG  50

seq1  ATATAAAGAAACTCAGCTAACAAATCTAAATCAGGAGCTTTGGGCAGTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAAAGAAACTCAGCTAACAAATCTAAATCAGGAGCTTTGGGCAGTAT  100

seq1  AGCTCAGTAATAGAACGTTTATGTGGCCTAGTACATGTGAGTCCCTAGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCAGTAATAGAACGTTTATGTGGCCTAGTACATGTGAGTCCCTAGAC  150

seq1  TTAATGCCCAGTACTGAAAAACAAGACAAATAAAACAAAACAAGACGAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATGCCCAGTACTGAAAAACAAGACAAATAAAACAAAACAAGACGAAA  200

seq1  CAAAGCAAGATGAACCTAATCCAAACAAGAGCCAGGGGTGACCTTGAATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGCAAGATGAACCTAATCCAAACAAGAGCCAGGGGTGACCTTGAATT  250

seq1  GGAAAGACAATCTAGGCTCAGTCCTGGGAGTTCTCTAGCCAACCCTCTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGACAATCTAGGCTCAGTCCTGGGAGTTCTCTAGCCAACCCTCTCC  300

seq1  CCCTTCCTGGCTCTCAGAATGCTTATGGACACTGCTTTAGTCAGGGACTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTCCTGGCTCTCAGAATGCTTATGGACACTGCTTTAGTCAGGGACTG  350

seq1  GATGGCTCCTATCCTCAGGTCAAAAGCCAGGTCCCAAGCCCAAAGCTTAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGCTCCTATCCTCAGGTCAAAAGCCAGGTCCCAAGCCCAAAGCTTAC  400

seq1  AAAAGGTGTCTTGAGGGCACTTCAGGTGAAAGAGGAAGGCTCCACCATGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGTGTCTTGAGGGCACTTCAGGTGAAAGAGGAAGGCTCCACCATGA  450

seq1  CTCATCCAACACAGGAGCTGTTGGTTCACAGCCTTTACAACCCACATTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATCCAACACAGGAGCTGTTGGTTCACAGCCTTTACAACCCACATTTT  500

seq1  CCAATTCAATTTAAACCACATTCTCTTTTTCTTTTTCTTTTTCTTTTTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATTCAATTTAAACCACATTCTCTTTTTCTTTTTCTTTTTCTTTTTCT  550

seq1  TTTTCTTTTTCTTTTTCTTTTTCTTTTTCTTTTTCTTTTTCTTTTTCTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTTTTCTTTTTCTTTTTCTTTTTCTTTTTCTTTTTCTTTTTCTTT  600

seq1  TTCTTTTTCTTTTTCTTTTTCTTTTTCTTTTTCTTTTCCTTTTCCTTTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTTTCTTTTTCTTTTTCTTTTTCTTTTTCTTTTCCTTTTCCTTTTT  650

seq1  CTTTTTCTTTTTCTTTTTCTTTTTCTTTTTCTTTTTCTTTTTCTTTTTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTCTTTTTCTTTTTCTTTTTCTTTTTCTTTTTCTTTTTCTTTTTCT  700

seq1  TTTCCTTTTCCTTTTCCTTTTTTTCTTTTTTCTTTTTTCTTTTTTTTTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTTTTCCTTTTCCTTTTTTTCTTTTTTCTTTTTTCTTTTTTTTTTG  750

seq1  TTTTTGTTTGTTTGTTTGTTTGTTTTTTGAGGCAGGGTTTCTCTGTATAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGTTTGTTTGTTTGTTTGTTTTTTGAGGCAGGGTTTCTCTGTATAT  800

seq1  CCCTGGCTGTCCTGGAACTCAAACCCCTGCCAGGGAAAAAAAGC-CCTTC  849
      |||||||||||||||||||||||||||||||||||||||||||| | |||
seq2  CCCTGGCTGTCCTGGAACTCAAACCCCTGCCAGGGAAAAAAAGCTCTTTC  850

seq1  ATATGAACTCTCCAATGTGACAGATCAGAAGGGAAAAACAGAAAAGGGAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGAACTCTCCAATGTGACAGATCAGAAGGGAAAAACAGAAAAGGGAA  900

seq1  A-TTTTTCTGATAAAACAAAGAGTAAAACTTGAAAAACAATTTGTAATTT  948
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTCTGATAAAACAAAGAGTAAAACTTGAAAAACAATTTGTAATTT  950

seq1  GGCACTTGTAAGATATGGCACTGTACTGGAAG-CCACAGGG-CTCTCCAA  996
      |||||||||||||||||||||||||||||||| || ||||| |||| |||
seq2  GGCACTTGTAAGATATGGCACTGTACTGGAAGCCCTCAGGGCCTCTTCAA  1000

seq1  CACTGAAACATC-CCATGACCAAGAAAACACTCTGGCAGACGATAGCCAA  1045
      |||||||||||| |||||||||| ||||||||   |||||||||||||||
seq2  CACTGAAACATCTCCATGACCAAAAAAACACTTCTGCAGACGATAGCCAA  1050

seq1  GGTAACAG-AAATCTGAACATGCAAACATCTGAG-AGGC-AGTATTTCCA  1092
      |||||||| |||||| ||  |||||| ||||||| |||| ||||||||||
seq2  GGTAACAGAAAATCTTAAACTGCAAA-ATCTGAGAAGGCGAGTATTTCCA  1099

seq1  GAGACA-TCAAGAGACAA-AGGATGAAAAGTGAAATGAAAAATTAGAGAA  1140
      |||||| |||||| |||| ||| |||||||||||||||||||||||||||
seq2  GAGACATTCAAGA-ACAACAGGTTGAAAAGTGAAATGAAAAATTAGAGAA  1148

seq1  AAATA  1145
      |||||
seq2  AAATA  1153