MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	B6Ng01-061J18
Chromosome	2 (Build37)
Map Location	4,357,322 - 4,486,732
singlet/doublet	doublet
Overlap gene	Frmd4a
Upstream gene	Dclre1c, Suv39h2, Hspa14, Armetl1, LOC100040219, LOC666495, 3110001A13Rik, LOC100040257, LOC100040163, LOC666944, 1700080N15Rik, EG634452
Downstream gene	Prpf18, LOC623483, E130319B15Rik, LOC666973, Sephs1, Phyh, LOC381346, LOC100040250, LOC100040426, 1110017I16Rik, Mcm10, Optn, Ccdc3, LOC100040292, Camk1d
Link	Open Mouse BAC browser

Click to get alignment info.

name	Dclre1c (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:227525 MGI:2441769
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	Suv39h2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:64707 MGI:1890396
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Hspa14 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:50497 MGI:1354164
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Armetl1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:227526 MGI:3606576
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100040219 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100040219
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 6 mRNAs, 107 ESTs, 4 Proteins

name	LOC666495 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:666495
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 106 ESTs, 2 Proteins pseudo : _no_value

name	3110001A13Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:66540 MGI:1913790
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100040257 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100040257
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA

name	LOC100040163 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100040163
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 Proteins pseudo : _no_value

name	LOC666944 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:666944
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 Proteins pseudo : _no_value

name	1700080N15Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:73489 MGI:1920739
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST

name	Frmd4a (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:209630 MGI:1919850
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG634452 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:634452 MGI:3645372
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 Proteins pseudo : _no_value

name	Prpf18 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:67229 MGI:1914479
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC623483 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:623483
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 ESTs, 3 Proteins

name	E130319B15Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:209645 MGI:2443100
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC666973 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:666973
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs, 5 Proteins pseudo : _no_value

name	Sephs1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:109079 MGI:1923580
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Phyh (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:16922 MGI:891978
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC381346 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:381346
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 6 Proteins

name	LOC100040250 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100040250
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 Proteins pseudo : _no_value

name	LOC100040426 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100040426
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 488 ESTs, 2 Proteins

name	1110017I16Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:68527 MGI:1915777
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Mcm10 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:70024 MGI:1917274
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Optn (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:71648 MGI:1918898
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ccdc3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:74186 MGI:1921436
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100040292 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100040292
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 Proteins pseudo : _no_value

name	Camk1d (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:227541 MGI:2442190
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Dclre1c (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142368826 GeneID:227525 MGI:2441769
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : DNA cross-link repair 1C, PSO2 homolog (S. cerevisiae) transcript_id : NM_146114.2

name	Dclre1c (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141803344 GeneID:227525 MGI:2441769
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : DNA cross-link repair 1C, PSO2 homolog (S. cerevisiae) transcript_id : NM_175683.3

name	Suv39h2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141801869 GeneID:64707 MGI:1890396
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : suppressor of variegation 3-9 homolog 2 (Drosophila) transcript_id : NM_022724.3

name	Hspa14 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:82880661 GeneID:50497 MGI:1354164
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : heat shock protein 14 transcript_id : NM_015765.2

name	Armetl1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130456 GeneID:227526 MGI:3606576
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : arginine-rich, mutated in early stage tumors-like 1 transcript_id : NM_177647.4

name	LOC100040219 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149248850 GeneID:100040219
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 6 mRNAs, 107 ESTs, 4 Proteins product : similar to LSM7 homolog, U6 small nuclear RNA associated transcript_id : XM_001474285.1

name	3110001A13Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142383883 GeneID:66540 MGI:1913790
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 3110001A13 gene transcript_id : NM_025626.4

name	LOC100040257 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149248855 GeneID:100040257
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA product : hypothetical protein LOC100040257 transcript_id : XM_001474392.1

name	1700080N15Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149248857 GeneID:73489 MGI:1920739
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST product : RIKEN cDNA 1700080N15 gene transcript_id : XM_001474419.1

name	Frmd4a (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:40254209 GeneID:209630 MGI:1919850
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : FERM domain containing 4A transcript_id : NM_172475.2

name	Prpf18 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:41053869 GeneID:67229 MGI:1914479
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : PRP18 pre-mRNA processing factor 18 homolog (yeast) transcript_id : NM_026045.3

name	LOC623483 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149248847 GeneID:623483
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 ESTs, 3 Proteins product : similar to ribosomal protein L22 transcript_id : XM_887942.3

name	E130319B15Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141803215 GeneID:209645 MGI:2443100
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA E130319B15 gene transcript_id : NM_178663.3

name	Sephs1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:42734497 GeneID:109079 MGI:1923580
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : selenophosphate synthetase 1 transcript_id : NM_175400.5

name	Phyh (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:6754563 GeneID:16922 MGI:891978
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : phytanoyl-CoA hydroxylase transcript_id : NM_010726.1

name	LOC381346 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149248852 GeneID:381346
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 6 Proteins product : similar to ribosomal protein L36a transcript_id : XM_355309.6

name	LOC100040426 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149248868 GeneID:100040426
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 488 ESTs, 2 Proteins product : similar to ribosomal protein S28 transcript_id : XM_001474602.1

name	1110017I16Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141803179 GeneID:68527 MGI:1915777
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 1110017I16 gene transcript_id : NM_026754.2

name	Mcm10 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142369377 GeneID:70024 MGI:1917274
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : minichromosome maintenance deficient 10 (S. cerevisiae) transcript_id : NM_027290.2

name	Optn (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:133893033 GeneID:71648 MGI:1918898
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : optineurin transcript_id : NM_181848.4

name	Ccdc3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:58037350 GeneID:74186 MGI:1921436
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : coiled-coil domain containing 3 transcript_id : NM_028804.1

name	Camk1d (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:79750128 GeneID:227541 MGI:2442190
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : calcium/calmodulin-dependent protein kinase ID transcript_id : NM_177343.3

name	Dclre1c (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:28316788 CCDS:CCDS15649.1 GeneID:227525 MGI:2441769
definition	GO_component : GO:0005634 - nucleus [Evidence IC] GO_function : GO:0008409 - 5'-3' exonuclease activity [Evidence ISS]; GO:0004519 - endonuclease activity [Evidence IEA]; GO:0004527 - exonuclease activity [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0000287 - magnesium ion binding [Evidence IEA]; GO:0004518 - nuclease activity [Evidence IEA]; GO:0000014 - single-stranded DNA specific endodeoxyribonuclease activity [Evidence ISS] GO_process : GO:0030183 - B cell differentiation [Evidence IMP]; GO:0007001 - chromosome organization and biogenesis (sensu Eukaryota) [Evidence IMP]; GO:0006310 - DNA recombination [Evidence IMP]; GO:0006281 - DNA repair [Evidence IEA]; GO:0006302 - double-strand break repair [Evidence IMP]; GO:0006955 - immune response [Evidence IEA]; GO:0006974 - response to DNA damage stimulus [Evidence IEA]; GO:0010212 - response to ionizing radiation [Evidence IMP]; GO:0000723 - telomere maintenance [Evidence IMP] codon_start : 1 note : isoform 2 is encoded by transcript variant 2; SNM1-like; artemis; DNA cross-link repair 1A, PSO2 homolog product : DNA cross-link repair 1A, PSO2 homolog isoform 2 protein_id : NP_783614.1

name	Dclre1c (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:22122633 CCDS:CCDS15650.1 GeneID:227525 MGI:2441769
definition	GO_component : GO:0005634 - nucleus [Evidence IC] GO_function : GO:0008409 - 5'-3' exonuclease activity [Evidence ISS]; GO:0004519 - endonuclease activity [Evidence IEA]; GO:0004527 - exonuclease activity [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0000287 - magnesium ion binding [Evidence IEA]; GO:0004518 - nuclease activity [Evidence IEA]; GO:0000014 - single-stranded DNA specific endodeoxyribonuclease activity [Evidence ISS] GO_process : GO:0030183 - B cell differentiation [Evidence IMP]; GO:0007001 - chromosome organization and biogenesis (sensu Eukaryota) [Evidence IMP]; GO:0006310 - DNA recombination [Evidence IMP]; GO:0006281 - DNA repair [Evidence IEA]; GO:0006302 - double-strand break repair [Evidence IMP]; GO:0006955 - immune response [Evidence IEA]; GO:0006974 - response to DNA damage stimulus [Evidence IEA]; GO:0010212 - response to ionizing radiation [Evidence IMP]; GO:0000723 - telomere maintenance [Evidence IMP] codon_start : 1 exception : mismatches in translation note : isoform 1 is encoded by transcript variant 1; SNM1-like; artemis; DNA cross-link repair 1A, PSO2 homolog product : DNA cross-link repair 1A, PSO2 homolog isoform 1 protein_id : NP_666226.1

name	Suv39h2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31543790 CCDS:CCDS15652.1 GeneID:64707 MGI:1890396
definition	GO_component : GO:0000785 - chromatin [Evidence IEA] [Evidence ISS]; GO:0005720 - nuclear heterochromatin [Evidence IDA]; GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0003682 - chromatin binding [Evidence IDA] [Evidence IEA]; GO:0046974 - histone lysine N-methyltransferase activity (H3-K9 specific) [Evidence ISS]; GO:0018024 - histone-lysine N-methyltransferase activity [Evidence IEA]; GO:0008168 - methyltransferase activity [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0008276 - protein methyltransferase activity [Evidence IDA]; GO:0016740 - transferase activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0006333 - chromatin assembly or disassembly [Evidence ISS] [Evidence IEA]; GO:0016568 - chromatin modification [Evidence IEA]; GO:0006338 - chromatin remodeling [Evidence ISS]; GO:0007140 - male meiosis [Evidence IEP] codon_start : 1 note : Suv39h histone methyltransferase product : suppressor of variegation 3-9 homologue 2 protein_id : NP_073561.2

name	Hspa14 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:82880662 CCDS:CCDS15653.1 GeneID:50497 MGI:1354164
definition	GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA] GO_process : GO:0006457 - protein folding [Evidence IEA]; GO:0006986 - response to unfolded protein [Evidence IEA] codon_start : 1 note : isoform 1 is encoded by transcript variant 1; heat shock protein, 70 kDa 4; heat shock protein 4; heat shock 70kDa protein 14 product : heat shock 70kDa protein 14 isoform 1 protein_id : NP_056580.2

name	Armetl1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:29244056 CCDS:CCDS15654.1 GeneID:227526 MGI:3606576
definition	codon_start : 1 product : arginine-rich, mutated in early stage tumors-like 1 protein_id : NP_808315.1

name	LOC100040219 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149248851 GeneID:100040219
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001474335.1

name	3110001A13Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:13385088 CCDS:CCDS15655.1 GeneID:66540 MGI:1913790
definition	GO_component : GO:0005575 - cellular_component [Evidence ND] GO_function : GO:0003674 - molecular_function [Evidence ND] GO_process : GO:0008150 - biological_process [Evidence ND] codon_start : 1 note : novel DUF1151 domain containing protein product : hypothetical protein LOC66540 protein_id : NP_079902.1

name	LOC100040257 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149248856 GeneID:100040257
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001474442.1

name	1700080N15Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149248858 GeneID:73489 MGI:1920739
definition	codon_start : 1 product : hypothetical protein LOC73489 protein_id : XP_001474469.1

name	Frmd4a (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:40254210 CCDS:CCDS15656.1 GeneID:209630 MGI:1919850
definition	GO_component : GO:0005737 - cytoplasm [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005488 - binding [Evidence IEA]; GO:0008092 - cytoskeletal protein binding [Evidence IEA] codon_start : 1 product : FERM domain containing 4A protein_id : NP_766063.2

name	Prpf18 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:40254503 CCDS:CCDS15657.1 GeneID:67229 MGI:1914479
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] GO_process : GO:0006397 - mRNA processing [Evidence IEA]; GO:0000398 - nuclear mRNA splicing, via spliceosome [Evidence IEA] codon_start : 1 note : HPRP18 homolog product : PRP18 pre-mRNA processing factor 18 homolog protein_id : NP_080321.2

name	LOC623483 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149248848 GeneID:623483
definition	codon_start : 1 product : similar to ribosomal protein L22 protein_id : XP_893035.2

name	E130319B15Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31542577 CCDS:CCDS15658.1 GeneID:209645 MGI:2443100
definition	codon_start : 1 product : hypothetical protein LOC209645 protein_id : NP_848778.1

name	Sephs1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:42734498 CCDS:CCDS15659.1 GeneID:109079 MGI:1923580
definition	GO_function : GO:0000166 - nucleotide binding [Evidence IEA] codon_start : 1 exception : mismatches in translation product : selenophosphate synthetase 1 protein_id : NP_780609.3

name	Phyh (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6754564 CCDS:CCDS15660.1 GeneID:16922 MGI:891978
definition	GO_component : GO:0005777 - peroxisome [Evidence TAS] GO_function : GO:0003824 - catalytic activity [Evidence IDA]; GO:0005506 - iron ion binding [Evidence IEA]; GO:0031418 - L-ascorbic acid binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]; GO:0048244 - phytanoyl-CoA dioxygenase activity [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI] GO_process : GO:0001561 - fatty acid alpha-oxidation [Evidence IDA] codon_start : 1 note : lupus nephritis-associated peptide 1 product : phytanoyl-CoA hydroxylase protein_id : NP_034856.1

name	LOC381346 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149248853 GeneID:381346
definition	codon_start : 1 product : similar to ribosomal protein L36a protein_id : XP_355309.5

name	LOC100040426 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149248869 GeneID:100040426
definition	codon_start : 1 product : similar to ribosomal protein S28 protein_id : XP_001474652.1

name	1110017I16Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:27229068 CCDS:CCDS15661.1 GeneID:68527 MGI:1915777
definition	codon_start : 1 note : unique cartilage matrix-associated protein product : hypothetical protein LOC68527 protein_id : NP_081030.1

name	Mcm10 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:29789189 CCDS:CCDS15662.1 GeneID:70024 MGI:1917274
definition	codon_start : 1 exception : mismatches in translation product : minichromosome maintenance complex component 10 protein_id : NP_081566.1

name	Optn (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:32469491 CCDS:CCDS15663.1 GeneID:71648 MGI:1918898
definition	GO_component : GO:0005575 - cellular_component [Evidence ND] GO_function : GO:0003674 - molecular_function [Evidence ND] GO_process : GO:0008150 - biological_process [Evidence ND] codon_start : 1 note : TFIIIA-INTP product : optineurin protein_id : NP_862896.1

name	Ccdc3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:58037351 CCDS:CCDS15664.1 GeneID:74186 MGI:1921436
definition	GO_component : GO:0005575 - cellular_component [Evidence ND] GO_function : GO:0003674 - molecular_function [Evidence ND] GO_process : GO:0008150 - biological_process [Evidence ND] codon_start : 1 product : coiled-coil domain containing 3 protein_id : NP_083080.1

name	Camk1d (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:79750129 CCDS:CCDS15665.1 GeneID:227541 MGI:2442190
definition	GO_component : GO:0005737 - cytoplasm [Evidence ISS]; GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0005509 - calcium ion binding [Evidence IEA]; GO:0004685 - calcium- and calmodulin-dependent protein kinase activity [Evidence ISS]; GO:0005516 - calmodulin binding [Evidence IEA]; GO:0003824 - catalytic activity [Evidence IEA]; GO:0016301 - kinase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0004672 - protein kinase activity [Evidence IEA]; GO:0004674 - protein serine/threonine kinase activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA] GO_process : GO:0006468 - protein amino acid phosphorylation [Evidence IEA]; GO:0042981 - regulation of apoptosis [Evidence IDA] codon_start : 1 product : calcium/calmodulin-dependent protein kinase 1D protein_id : NP_796317.2

name	LOC100040163 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100040163
definition	number : 3 pseudo : _no_value

name	LOC100040163 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100040163
definition	number : 2 pseudo : _no_value

name	LOC100040163 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100040163
definition	number : 1 pseudo : _no_value

name	LOC666944 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:666944
definition	number : 1 pseudo : _no_value

name	EG634452 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:634452
definition	number : 3 pseudo : _no_value

name	EG634452 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:634452
definition	number : 2 pseudo : _no_value

name	EG634452 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:634452
definition	number : 1 pseudo : _no_value

name	LOC100040250 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100040250
definition	number : 1 pseudo : _no_value

name	LOC100040292 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100040292
definition	number : 1 pseudo : _no_value

name	LOC666495 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149248854 GeneID:666495
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 106 ESTs, 2 Proteins product : similar to Presenilin associated, rhomboid-like pseudo : _no_value transcript_id : XR_031723.1

name	LOC666973 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149248849 GeneID:666973
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs, 5 Proteins product : similar to Protein regulator of cytokinesis 1 pseudo : _no_value transcript_id : XR_031694.1

clone name	MSMg01-059J23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-527K01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-204F09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-346H07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-289K06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-180A13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-437J21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-315E04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-544I02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-179E10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-392L15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-262G15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-494D07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-155I06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-403M23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-378J18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-080F09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-107D19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-152B20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-278N12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-511K15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-535G20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-141N08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-134L02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-363B13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-343L13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-389B07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-315E23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-487H07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-524E12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-279A01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-343D10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-342O01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-456C18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-525I17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-131I15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-499L02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-063H23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-352L12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-499K01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-543F09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-232P02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-358N03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-355I04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-163K23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-407M02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-387H11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-442P16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-113B15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-368M14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-290J09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-072I01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-512L03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-523J06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-214E08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-455J16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-509G11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-421I12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-172N23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-068I23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-545K06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-417J24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-139B03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-526I16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-184J06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-168J10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-482K16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-195L03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-324I13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-515D08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-502L14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-212M02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-442I05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-318G03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-105M10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-445M05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-055E14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-514F12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-376E01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-235L04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-502C24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-467O15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-418D14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-453G04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-359K03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-518P08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-330L04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-112C17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-412D22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-443N15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-137A01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-533O04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-506L12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-055G07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-500G05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-265B15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-475A15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-470I17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-175F20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-087P24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-075J03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-135O02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-002G24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-271M17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-131I19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-089D16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-324D09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-196P16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-141A08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-310I18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-195K03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-077B23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-261P06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-156F23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-327J07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-312C04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-266D15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-296H10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-246D10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-149M19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-182A22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-122K12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-021K04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-320D16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-071K22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-252L16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-302M16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-097C05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-252M06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-338L16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-299F01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-250E17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-041K02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-297K08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-015F10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-237I17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-301K05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-213P17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-317L09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-067O13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-175L17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-135H23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-285F20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-062P16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-164K16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-208O16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-051A20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-259O05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-177C04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-250B11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-167D01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-331N07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-049J20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-029M24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-046A05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-263L18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-262C22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-016P01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-061J18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-292E15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-091H07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-226L05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-075P22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-023J20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-146P06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-150B11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-318H21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-232O09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-261I03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-274F08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-124J16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-290G24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-014A10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-189G19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-024B19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-309H23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-012I12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-238G05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-076D15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-315G09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-285D17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-137L22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-339N17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-210N15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-027N12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-027B24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-014B23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-171O16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-329C12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-069C24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-157C20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-096L04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-293C24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-301F01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-063F18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-065H24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-175D17
singlet/doublet	singlet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	B6Ng01-061J18.b	B6Ng01-061J18.g
ACC	DH882238	DH882239
length	693	166
definition	DH882238\|Mus musculus domesticus DNA, BAC clone: B6Ng01-061J18, 5' end.	DH882239\|Mus musculus domesticus DNA, BAC clone: B6Ng01-061J18, 3' end.
singlet/doublet	doublet	doublet
BLAST hit	unique	unique
Map location.	(4,357,322 - 4,358,014)	(4,486,567 - 4,486,732)
sequence	gaattccctcaaagcacatgttgccaaaaaaaaaaaaaaaaagacaagac aagttgatttcatgtcttctcagctgaacagggtaggcaggtggtatctt ctgattggctggctgacccgtctgctgaagtctggcccgtatctgccatc tgcttccttctgtgctccattcaccaggagtccctgcctcagccaagggc taaggatgcacgcagaggcaaggagtagacaaagggactcagcatcataa accgtctgtcctggatctctcaggccaccttgtcaagacgagccagagcg ggcgggacagcgccgccgtgagctgacctctaccttcagagtgattgcca gcatcatttattaagctctgttctgtgaagcaggcacactaccaaatgag caaaccagatgtcgccccagcccctgggggtggccaataatatttaacat cttaaaggcacatggtaaagcaaacaaatgtgacgatagagtatagccag atgacgtgatggtaattccatatgtcatcgagagttcatttaacagcgtg aaggaataggaaacagctcatgaggtatgcacgcacagatgaatagtttc ccctttggggaggagctagaagatgccaaaccttcccccctctccagcaa ggacttttaaaaacattcgggagtgggagtgggagtgggggag	tttcctcctctccacagtccagagcatttcctacatggggagacttcctg catcactctaagtagacagatgttccctgaaaggtctgcttatccagtac agatacattcccagtgaagtggtagtagtaatctgctctaaactccctgg tgtgtgtgtgtgtgtg
quality values	Open. Hide. 50 37 24 26 50 43 50 43 50 38 29 47 55 55 55 50 55 52 47 55 55 52 41 43 40 27 19 14 13 12 13 12 13 13 18 18 19 39 59 59 59 59 41 59 52 52 59 49 59 52 59 49 61 61 61 44 34 61 61 61 59 59 59 59 59 36 59 59 59 59 59 39 31 41 43 35 30 28 35 36 36 61 61 59 61 59 61 61 59 52 61 59 61 59 59 59 61 43 50 52 49 52 59 61 61 61 61 59 59 61 61 61 59 61 59 59 52 52 52 39 45 59 59 59 59 59 59 61 59 49 59 59 59 59 59 45 59 52 52 45 52 59 52 52 59 52 43 39 49 44 35 41 49 59 52 44 49 52 59 52 59 59 52 59 45 59 49 45 39 52 59 36 36 45 52 39 39 59 45 31 45 33 37 37 44 59 49 49 49 45 39 28 49 52 39 45 52 55 55 50 59 52 61 59 61 37 41 49 49 30 44 39 52 43 43 59 52 59 52 45 52 61 61 61 59 55 44 31 59 49 43 52 61 61 52 49 52 45 52 39 49 36 52 49 59 52 39 59 59 52 52 52 49 45 39 49 52 59 45 41 45 49 52 39 40 59 41 49 36 49 39 45 33 59 45 43 39 39 39 49 49 59 49 45 43 49 45 59 49 30 59 39 49 52 43 27 59 52 52 59 59 59 59 59 59 59 59 44 45 39 41 31 36 49 27 35 35 31 36 41 45 43 45 52 43 49 36 31 35 37 37 33 41 41 49 52 49 43 35 59 52 59 61 59 59 52 59 49 44 39 30 37 33 52 41 31 49 59 55 59 61 61 45 43 23 34 41 29 35 36 39 43 36 39 39 59 59 59 44 44 52 36 29 59 33 26 35 36 45 52 36 45 38 34 45 59 59 49 52 29 43 36 35 35 43 45 37 22 59 43 43 36 27 13 27 37 36 41 28 23 33 37 36 43 38 43 61 61 61 61 59 59 59 43 49 43 49 61 59 59 59 59 61 61 36 49 52 36 31 43 36 43 43 61 61 52 49 52 36 31 36 29 52 61 61 61 61 55 52 49 52 49 52 52 52 41 52 61 61 61 52 49 52 52 32 52 55 50 43 55 55 61 61 50 49 31 43 49 31 37 61 55 55 61 55 49 50 55 50 55 55 55 61 61 36 43 49 37 29 23 43 61 55 61 61 39 49 50 50 33 50 50 61 43 43 43 43 31 50 61 43 31 32 32 24 18 26 21 35 61 61 61 39 61 61 50 50 50 61 61 50 50 42 35 29 20 23 33 35 29 32 61 37 27 61 61 45 47 34 45 35 39 19 38 28 42 28 24 61 61 61 61 61 61 57 53 24 26 21 24 16 19 24 34 38 47 47 47 53 47 53 47 19 38 21 21 31 24 47 47 24 35 47 25 23 25 23 22 21 29 20 24 26 26 19 15 19 15 17 20 32 27 38 27 28 23 16 27 25 34 18 24 29 24 28 29 57 46 33 57 23 23 18 18 10 26 27 22 11 18 43 34 25 47 46 41 43 43 30 53 46 43 46 53 38 43 34 41 33 33 17 32 8	Open. Hide. 20 24 24 34 22 24 18 18 18 18 49 49 59 49 59 49 59 59 61 49 49 49 61 59 52 59 59 61 59 59 59 59 59 59 59 61 61 61 61 61 59 52 59 59 52 52 52 41 41 44 36 39 45 59 59 59 59 59 59 52 61 59 61 59 35 61 59 59 59 61 61 61 45 36 44 39 45 45 59 59 61 61 59 61 59 49 49 59 44 52 52 43 45 39 38 38 34 52 59 59 59 49 59 52 52 59 45 59 59 59 52 59 52 59 61 61 59 55 52 59 61 59 59 59 52 59 59 59 59 59 59 59 59 52 59 59 59 59 59 59 59 59 52 52 50 50 52 52 59 61 44 55 61 61 59 59 59 61 61 55 61 61 61 61 61 43

Alignment Information

BAC End 1

BAC End 2

seq1: chr2_4357322_4358014
seq2: B6Ng01-061J18.b_46_738

seq1  GAATTCCCTCAAAGCACATGTTGCCAAAAAAAAAAAAAAAAAGACAAGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTCAAAGCACATGTTGCCAAAAAAAAAAAAAAAAAGACAAGAC  50

seq1  AAGTTGATTTCATGTCTTCTCAGCTGAACAGGGTAGGCAGGTGGTATCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTGATTTCATGTCTTCTCAGCTGAACAGGGTAGGCAGGTGGTATCTT  100

seq1  CTGATTGGCTGGCTGACCCGTCTGCTGAAGTCTGGCCCGTATCTGCCATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATTGGCTGGCTGACCCGTCTGCTGAAGTCTGGCCCGTATCTGCCATC  150

seq1  TGCTTCCTTCTGTGCTCCATTCACCAGGAGTCCCTGCCTCAGCCAAGGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTCCTTCTGTGCTCCATTCACCAGGAGTCCCTGCCTCAGCCAAGGGC  200

seq1  TAAGGATGCACGCAGAGGCAAGGAGTAGACAAAGGGACTCAGCATCATAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGATGCACGCAGAGGCAAGGAGTAGACAAAGGGACTCAGCATCATAA  250

seq1  ACCGTCTGTCCTGGATCTCTCAGGCCACCTTGTCAAGACGAGCCAGAGCG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGTCTGTCCTGGATCTCTCAGGCCACCTTGTCAAGACGAGCCAGAGCG  300

seq1  GGCGGGACAGCGCCGCCGTGAGCTGACCTCTACCTTCAGAGTGATTGCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGGGACAGCGCCGCCGTGAGCTGACCTCTACCTTCAGAGTGATTGCCA  350

seq1  GCATCATTTATTAAGCTCTGTTCTGTGAAGCAGGCACACTACCAAATGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCATTTATTAAGCTCTGTTCTGTGAAGCAGGCACACTACCAAATGAG  400

seq1  CAAACCAGATGTCGCCCCAGCCCCTGGGGGTGGCCAATAATATTTAACAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACCAGATGTCGCCCCAGCCCCTGGGGGTGGCCAATAATATTTAACAT  450

seq1  CTTAAAGGCACATGGTAAAGCAAACAAATGTGACGATAGAGTATAGCCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAAGGCACATGGTAAAGCAAACAAATGTGACGATAGAGTATAGCCAG  500

seq1  ATGACGTGATGGTAATTCCATATGTCATCGAGAGTTCATTTAACAGCGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACGTGATGGTAATTCCATATGTCATCGAGAGTTCATTTAACAGCGTG  550

seq1  AAGGAATAGGAAACAGCTCATGAGGTATGCACGCACAGATGAATAGTTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAATAGGAAACAGCTCATGAGGTATGCACGCACAGATGAATAGTTTC  600

seq1  CCCTTTGGGGAGGAGCTAGAAGATGCCAAACCTTCCCCCCTCTCCAGCAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTGGGGAGGAGCTAGAAGATGCCAAACCTTCCCCCCTCTCCAGCAA  650

seq1  GGACTTTTAAAAACATTCGGGAGTGGGAGTGGGAGTGGGGGAG  693
      |||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTTTTAAAAACATTCGGGAGTGGGAGTGGGAGTGGGGGAG  693

seq1: chr2_4486567_4486732
seq2: B6Ng01-061J18.g_75_240 (reverse)

seq1  CACACACACACACACACCAGGGAGTTTAGAGCAGATTACTACTACCACTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACCAGGGAGTTTAGAGCAGATTACTACTACCACTT  50

seq1  CACTGGGAATGTATCTGTACTGGATAAGCAGACCTTTCAGGGAACATCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGGGAATGTATCTGTACTGGATAAGCAGACCTTTCAGGGAACATCTG  100

seq1  TCTACTTAGAGTGATGCAGGAAGTCTCCCCATGTAGGAAATGCTCTGGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACTTAGAGTGATGCAGGAAGTCTCCCCATGTAGGAAATGCTCTGGAC  150

seq1  TGTGGAGAGGAGGAAA  166
      ||||||||||||||||
seq2  TGTGGAGAGGAGGAAA  166

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information