BAC Information

Click to search

BAC

Clone NameB6Ng01-061M12
ChromosomeX (Build37)2 (Build37)
Map Location 86,169,481 - 86,169,69552,389,130 - 52,390,075
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEG667883, LOC667891, EG245506, LOC667911, LOC100041707, EG436213
Downstream geneLOC667919, LOC100041727, LOC667934, Pet2, EG629419, 4932429P05Rik, LOC633246, Nanog-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-061M12.bB6Ng01-061M12.g
ACCDH882366DH882367
length938948
definitionDH882366|Mus musculus domesticus DNA, BAC clone: B6Ng01-061M12, 5' end.DH882367|Mus musculus domesticus DNA, BAC clone: B6Ng01-061M12, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(86,169,481 - 86,169,695)(52,389,130 - 52,390,075)
sequence
gaattcttagtcctaagggatgtcttttttttaagtgaaatttatttatt
tatttatttatttttaaaatattttttattacctattttcctcaattaca
tttccaatgtcttgcacgcgctcaactggccaggaagaacgacactgcaa
caggatccttctgcacacgtttattgggagagcattgattgcgaaggcaa
aagaagaacaagaacaaggaaaatgatgctgcttatatacccctccatgt
gacgtgtcagctcctgattagctgctcactcatcaccccactactacgcc
ccgggatgggcagtgacttggcacgaatttactcttgcacctgcgcacat
tacttgtttaccagttaggcacagcggaggctcgtgatggcaattgctca
cggctctccacaccaatgctatcccaaaagtcccccataccctccccccc
acttccctacccacccattcccattttttggccctggcgttcccctgtac
tggggcatatacagtttgcgtgtccaatgggcctctctttccaatgatgg
ccaactaggccatcttttgatacatatgcagctagagtcaagagctccgg
gggatactggttagttcctattgttgttctacctatagggttgcagatcc
ctttagctccttgggtactttctctagctcctccattgggagccctgtga
tccatccaatagctgactgtgagcatccacttctgtgtttgctaggcccc
agcatagtctcacaagagacagctacatctgggtcctttcgataaaatct
tgctagtgtatgcaatggtgtcagcgttggaagctgattatagggatgtc
tttcatacacttccaaccaaggctcagatcattgtgaagtgtgggcagaa
agatagtaagagccagagtcagtgtgtgacttgaaaca
gaattctttacataaactatttgtgagtagcttataaaaaatgaactagg
atgggttgactaattcccttactggcaggaaagatttgaagaaggcgggg
aagaaggtttacaaagaaatggatgaaaaaaaaaatctcagtgccaagta
ccatgacaactaaaatatctttgtctgtctcaaattagtctacgttcctg
actgacttcccatcatttctgtttgttctcatgtggcttacagagaggaa
cacgagaaggctggtttgcatggagctcattcagagaactgacctcattt
agagagtcacagatttccggtatggccatcacagacataatagctctgat
aataacacagctgctaaattacaatccaaggaagtggcaaagattctatt
ttcaagaaaatgtccctgaaaatgtccttgcaaatgagaacaaataagaa
gaaacaagaatattactgcaccgacagcattactcccaaacaaaatatct
tccaatcttctctgtgaccagtcgctaatctcctcgagtacgcccttcgc
agtgtcagagctggacctggtctaggatgatttatgccatttactctcag
ggcggtgtaaagcagtctcatgtccctacgcacaaaaacaccaacatcac
aggggctgtacttttctttccctcattcaacatttttgttgcatatcatt
gtgctatgtgtctttggtttttaatcaactaatttatttatgtattattg
tgtgtgggcatgatatgtgtgtaggggatgtgcaccaccttacatggggt
ggaggtcagaaaacaactgtgtggagtgaaggctttctatcttttttgtg
aatttttcgggattgagcttgggtctctaggtttggatagcagcaccttt
accagtgaaccatttcacctatccaataatagtctcgacccattatat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_86169481_86169695
seq2: B6Ng01-061M12.b_71_610 (reverse)

seq1  GATGGCCTAGTCGGCCATCACTGGAAAGAGAGGCCCATTGGACACCCAAA  50
      ||||||||||| |||||||| |||||||||||||||||||||||| ||||
seq2  GATGGCCTAGTTGGCCATCATTGGAAAGAGAGGCCCATTGGACACGCAAA  50

seq1  CTTTATATG-CCCAGTACAGGGGAACGCCAGGGCCAAAAAAATGGGAATG  99
      || |||||| ||||||||||||||||||||||||| ||||||||||||||
seq2  CTGTATATGCCCCAGTACAGGGGAACGCCAGGGCC-AAAAAATGGGAATG  99

seq1  AGTGGGTAGGGAAGTGGGGGGGAGGGTATGGGGGACTTTTGGGATAGCAT  149
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGGTAGGGAAGTGGGGGGGAGGGTATGGGGGACTTTTGGGATAGCAT  149

seq1  -----TGGAAA------TGTAATTG-----AGGAAAAT---ATGTAATAA  180
           |||| |       | |||||     | ||   |    |||    |
seq2  TGGTGTGGAGAGCCGTGAGCAATTGCCATCACGAGCCTCCGCTGTGCCTA  199

seq1  AAAATAAAATAAATAAATAAATCA--TGGAAAAAAAA-------------  215
      |     ||| || |||      ||  || || |  ||             
seq2  ACTGGTAAACAAGTAATGTGCGCAGGTGCAAGAGTAAATTCGTGCCAAGT  249

seq1  --------------------------------------------------  215
                                                        
seq2  CACTGCCCATCCCGGGGCGTAGTAGTGGGGTGATGAGTGAGCAGCTAATC  299

seq1  --------------------------------------------------  215
                                                        
seq2  AGGAGCTGACACGTCACATGGAGGGGTATATAAGCAGCATCATTTTCCTT  349

seq1  --------------------------------------------------  215
                                                        
seq2  GTTCTTGTTCTTCTTTTGCCTTCGCAATCAATGCTCTCCCAATAAACGTG  399

seq1  --------------------------------------------------  215
                                                        
seq2  TGCAGAAGGATCCTGTTGCAGTGTCGTTCTTCCTGGCCAGTTGAGCGCGT  449

seq1  --------------------------------------------------  215
                                                        
seq2  GCAAGACATTGGAAATGTAATTGAGGAAAATAGGTAATAAAAAATATTTT  499

seq1  -----------------------------------------  215
                                               
seq2  AAAAATAAATAAATAAATAAATAAATTTCACTTAAAAAAAA  540

seq1: chr2_52389130_52390075
seq2: B6Ng01-061M12.g_71_1018

seq1  GAATTCTTTACATAAACTATTTGTGAGTAGCTTATAAAAAATGAACTAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTACATAAACTATTTGTGAGTAGCTTATAAAAAATGAACTAGG  50

seq1  ATGGGTTGACTAATTCCCTTACTGGCAGGAAAGATTTGAAGAAGGCGGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGTTGACTAATTCCCTTACTGGCAGGAAAGATTTGAAGAAGGCGGGG  100

seq1  AAGAAGGTTTACAAAGAAATGGATGAAAAAAAAAATCTCAGTGCCAAGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGGTTTACAAAGAAATGGATGAAAAAAAAAATCTCAGTGCCAAGTA  150

seq1  CCATGACAACTAAAATATCTTTGTCTGTCTCAAATTAGTCTACGTTCCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGACAACTAAAATATCTTTGTCTGTCTCAAATTAGTCTACGTTCCTG  200

seq1  ACTGACTTCCCATCATTTCTGTTTGTTCTCATGTGGCTTACAGAGAGGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGACTTCCCATCATTTCTGTTTGTTCTCATGTGGCTTACAGAGAGGAA  250

seq1  CACGAGAAGGCTGGTTTGCATGGAGCTCATTCAGAGAACTGACCTCATTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGAGAAGGCTGGTTTGCATGGAGCTCATTCAGAGAACTGACCTCATTT  300

seq1  AGAGAGTCACAGATTTCCGGTATGGCCATCACAGACATAATAGCTCTGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGTCACAGATTTCCGGTATGGCCATCACAGACATAATAGCTCTGAT  350

seq1  AATAACACAGCTGCTAAATTACAATCCAAGGAAGTGGCAAAGATTCTATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAACACAGCTGCTAAATTACAATCCAAGGAAGTGGCAAAGATTCTATT  400

seq1  TTCAAGAAAATGTCCCTGAAAATGTCCTTGCAAATGAGAACAAATAAGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGAAAATGTCCCTGAAAATGTCCTTGCAAATGAGAACAAATAAGAA  450

seq1  GAAACAAGAATATTACTGCACCGACAGCATTACTCCCAAACAAAATATCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACAAGAATATTACTGCACCGACAGCATTACTCCCAAACAAAATATCT  500

seq1  TCCAATCTTCTCTGTGACCAGTCGCTAATCTCCTCGAGTACGCCCTTCGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAATCTTCTCTGTGACCAGTCGCTAATCTCCTCGAGTACGCCCTTCGC  550

seq1  AGTGTCAGAGCTGGACCTGGTCTAGGATGATTTATGCCATTTACTCTCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTCAGAGCTGGACCTGGTCTAGGATGATTTATGCCATTTACTCTCAG  600

seq1  GGCGGTGTAAAGCAGTCTCATGTCCCTACGCACAAAAACACCAACATCAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGGTGTAAAGCAGTCTCATGTCCCTACGCACAAAAACACCAACATCAC  650

seq1  A-GGGCTGTACTTTTCTTTCCCTCATTCAACATTTTTGTTGCATATCATT  699
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGCTGTACTTTTCTTTCCCTCATTCAACATTTTTGTTGCATATCATT  700

seq1  GTGCTATGTGTCTTT-GTTTTTAATCAACTAATTTATTTATGTATTATTG  748
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  GTGCTATGTGTCTTTGGTTTTTAATCAACTAATTTATTTATGTATTATTG  750

seq1  TGTGTGGGCATGATATGTGTGTA-GGGATGTGCACCACCTTACAT-GGGT  796
      ||||||||||||||||||||||| ||||||||||||||||||||| ||||
seq2  TGTGTGGGCATGATATGTGTGTAGGGGATGTGCACCACCTTACATGGGGT  800

seq1  GGAGGTCAGAAGACAACTGTGTGGAGTGAAGGCTTTCTATC-TTTCTGTG  845
      ||||||||||| ||||||||||||||||||||||||||||| ||| ||||
seq2  GGAGGTCAGAAAACAACTGTGTGGAGTGAAGGCTTTCTATCTTTTTTGTG  850

seq1  -ACTTCTCAGGATTGAGCTTGGGTCTCTAGGCTTGTATAGCAAGCACCTT  894
       | || || |||||||||||||||||||||| ||| ||||| ||||||||
seq2  AATTTTTCGGGATTGAGCTTGGGTCTCTAGGTTTGGATAGC-AGCACCTT  899

seq1  TATCCACTGAACCATTTCACCTATCCAAAGTATAGTCTCCGACCCATTAT  944
      || ||| ||||||||||||||||||| ||  ||||||| |||||||||||
seq2  TA-CCAGTGAACCATTTCACCTATCC-AATAATAGTCT-CGACCCATTAT  946

seq1  AT  946
      ||
seq2  AT  948