BAC Information

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BAC

Clone NameB6Ng01-061O11
Chromosome1 (Build37)2 (Build37)
Map Location 92,944,434 - 92,945,401136,037,875 - 136,038,198
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneIqca, Cxcr7, Cops8, Col6a3, Mlph, Prlh, Rab17
Downstream geneLrrfip1, Gm817, LOC665766, Ramp1, Ube2f, LOC665783, Scly, Espnl, Klhl30, BC056923, Ilkap, 1700020N18Rik, Hes6, Per2, Traf3ip1, Asb1, Twist2, Hdac4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-061O11.bB6Ng01-061O11.g
ACCDH882458DH882459
length965397
definitionDH882458|Mus musculus domesticus DNA, BAC clone: B6Ng01-061O11, 5' end.DH882459|Mus musculus domesticus DNA, BAC clone: B6Ng01-061O11, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(92,944,434 - 92,945,401)(136,037,875 - 136,038,198)
sequence
gaattctattggctgatagacagaactcccgcctggagcctagaggacgg
atctgtgacaagcttagggatagatttattggcgaaggatgcaaagtata
tggggtgtctttcatagggatggattcctattgactgtaggatccggtcc
tagtgatgctcaggaagttggggggattcaggcagaggctgagagtcacc
aagttgatggaccactttcccaggtgactaggcgtcattcatttccttcc
gatgaagaatataggcccgcgtgattgacagtcctgggttctccagtgcc
ttttctaagctgtgctttctacaggtttactggttcaagttaagttcagg
gagatagtcaagggctcactgagtctgatgaatgactgctcccaagtgag
gtcctttgggtgtctggcatgagttacctctgtgttgggggcacctctgt
gccatacagcatgttgggcttgtgccatgataagatattcaggacttaca
gcaggatctggatttgaaacctggctccccatgtctgtggaccagtcaaa
ccccttgtatataatagtaacttttattcttctgtatttattgtcatctc
caaggcttactgcctcattctggtaacctaggcctagtcctggaagcttc
tagtctccgtataatctaatctaggcctagaatgttttctacctctggga
ttttactgctgaataaactcactctttcttgttgtttctgaacttggact
agctggcttaactcagctgttctggctcaaacccgtctccaaactgactg
actcaatctgggcttctcttttagctctgcttgcctcagactaactctag
caatctgttttatcttctggctccctctcatcctctggctcgttctatct
tcacctgtgtctagcttgttctctctgcaccctgtctctgtaaactctcc
agtaaactgccttct
gaattctgttttgttgtttgtttacctgtcttttgctccatttgtagaat
atttccattgtaaataaaagggtttctttaagtgtgtgtgtatatgtatg
tatgtgtgtgtgtgtgtgtgtgtccgacagcttgcatgtggcatcagaga
acaatttccttccactttgtttgaggtcaggtttcatgctgtgtacacta
atctggctggcattcaggctcttcctgtttctgctgggattaaagatggg
cgtcgttgcatccagctttacacggtgttggggagcattgtgactgtctt
cgtttagggtttctattgcacggaagagacaccacgaccagggaagctct
taaaaatgaaaacacttcactgggtctggtttacagtttcagaggtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_92944434_92945401
seq2: B6Ng01-061O11.b_43_1007

seq1  GAATTCTATTGGCTGATAGACAGAACTCAAGCCTGGAGCCTAGAGGACGG  50
      ||||||||||||||||||||||||||||  ||||||||||||||||||||
seq2  GAATTCTATTGGCTGATAGACAGAACTCCCGCCTGGAGCCTAGAGGACGG  50

seq1  ATCTGTGACAAGCTTAGGGATAGATTTATTGGCGAAGGATGCAAAGTATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTGACAAGCTTAGGGATAGATTTATTGGCGAAGGATGCAAAGTATA  100

seq1  TGGGGTGTCTTTCATAGGGATGGATTCCTATTGACTGTAGGATCCGGTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGTGTCTTTCATAGGGATGGATTCCTATTGACTGTAGGATCCGGTCC  150

seq1  TAGTGATGCTCAGGAAGTTGGGGGGATTCAGGCAGAGGCTGAGAGTCACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGATGCTCAGGAAGTTGGGGGGATTCAGGCAGAGGCTGAGAGTCACC  200

seq1  AAGTTGATGGACCACTTTCCCAGGTGACTAGGCGTCATTCATTTCCTTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTGATGGACCACTTTCCCAGGTGACTAGGCGTCATTCATTTCCTTCC  250

seq1  GATGAAGAATATAGGCCCGCGTGATTGACAGTCCTGGGTTCTCCAGTGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAAGAATATAGGCCCGCGTGATTGACAGTCCTGGGTTCTCCAGTGCC  300

seq1  TTTTCTAAGCTGTGCTTTCTACAGGTTTACTGGTTCAAGTTAAGTTCAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTAAGCTGTGCTTTCTACAGGTTTACTGGTTCAAGTTAAGTTCAGG  350

seq1  GAGATAGTCAAGGGCTCACTGAGTCTGATGAATGACTGCTCCCAAGTGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATAGTCAAGGGCTCACTGAGTCTGATGAATGACTGCTCCCAAGTGAG  400

seq1  GTCCTTTGGGTGTCTGGCATGAGTTACCTCTGTGTTGGGGGCACCTCTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTTTGGGTGTCTGGCATGAGTTACCTCTGTGTTGGGGGCACCTCTGT  450

seq1  GCCATACAGCATGTTGGGCTTGTGCCATGATAAGATATTCAGGACTTACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATACAGCATGTTGGGCTTGTGCCATGATAAGATATTCAGGACTTACA  500

seq1  GCAGGATCTGGATTTGAAACCTGGCTCCCCATGTCTGTGGACCAGTCAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGATCTGGATTTGAAACCTGGCTCCCCATGTCTGTGGACCAGTCAAA  550

seq1  CCCCTTGTATATAATAGTAACTTTTATTCTTCTGTATTTATTGTCATCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTTGTATATAATAGTAACTTTTATTCTTCTGTATTTATTGTCATCTC  600

seq1  CAAGGCTTACTGCCTCATTCTGGTAACCTAGGCCTAGTCCTGGAAGCTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGCTTACTGCCTCATTCTGGTAACCTAGGCCTAGTCCTGGAAGCTTC  650

seq1  TAGTCTCCGTATAATCTAATCTAGGCCTAGAATGTTTTCTACCTCTGGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCTCCGTATAATCTAATCTAGGCCTAGAATGTTTTCTACCTCTGGGA  700

seq1  TTTTACTGCTGAATAAACTCACTCTTTCTTGTTGTTTCTGAACTTGGACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACTGCTGAATAAACTCACTCTTTCTTGTTGTTTCTGAACTTGGACT  750

seq1  AGCTGGCTTAACTCAGCTGTTCTGGCTCAAACCCGTCTCCAAACTGACTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGGCTTAACTCAGCTGTTCTGGCTCAAACCCGTCTCCAAACTGACTG  800

seq1  ACTCAATCT-GGCTTCTCTTTTAGCTCTGCTTGCCTCAGACTAACTCTAG  849
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAATCTGGGCTTCTCTTTTAGCTCTGCTTGCCTCAGACTAACTCTAG  850

seq1  CAATCTGTTTTAATCTTCTGGCTCCCTCTCATCCTCTGGCTCGTTCTATC  899
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  CAATCTGTTTT-ATCTTCTGGCTCCCTCTCATCCTCTGGCTCGTTCTATC  899

seq1  TTCACCTGTGTCTAGCTTGTTCTCTCTGCACCCTGTCTCTGTAAAACTCT  949
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TTCACCTGTGTCTAGCTTGTTCTCTCTGCACCCTGTCTCTGT-AAACTCT  948

seq1  CCCAGTAAAACTGCCTCCT  968
       ||||| ||||||||| ||
seq2  -CCAGT-AAACTGCCTTCT  965

seq1: chr2_136037875_136038198
seq2: B6Ng01-061O11.g_157_467 (reverse)

seq1  AACCTCTGAAACTGTAATCAAAATAAGACTCACTTAGAAG----TTGATT  46
      |||||||||||||||     |||  |||| || |  ||||    || |||
seq2  AACCTCTGAAACTGT-----AAACCAGACCCAGT--GAAGTGTTTTCATT  43

seq1  GTTTTAGGTATTC-----------TGTTACAAAGGTAGAAAGGTAGCCCA  85
       ||| ||   |||           |||  |    ||  ||  | | ||| 
seq2  -TTTAAGAGCTTCCCTGGTCGTGGTGTCTCTTCCGTGCAATAGAAACCC-  91

seq1  CAGACCTTGAAACTAATACTAGTTCTCA--CTTGAGTATAGATAAAATCT  133
       | ||   || | | | | |  | | ||     | ||| || |  |   |
seq2  TAAACGAAGACAGTCACAATGCTCCCCAACACCGTGTAAAGCTGGA---T  138

seq1  TAAACTATTTCACATATAAGTTGATTTTTACCAATAAGTTTTAAACATAT  183
        ||| |   | ||| |   || ||     || |  ||    |||||   
seq2  GCAACGA-CGCCCATCT---TTAAT-----CCCAGCAG----AAACAGGA  175

seq1  GGCTTCTTAAATTTTA---TGAATTGTGGA-ACAGGTTCCCCCCTACCTT  229
       |   | | |||   |    || | ||| | ||||  |    |||  | |
seq2  AG-AGCCTGAATGCCAGCCAGATTAGTGTACACAGCATGAAACCTGACCT  224

seq1  TTCTCATCTTTTCCGTTAGTCCTTTTTGTTCCCTAGGCTGTTTTACTTCT  279
          ||   |    |  |       |||||| ||  | ||    || |  
seq2  CAAACAAAGTGGAAGGAA------ATTGTTCTCT--GATG--CCACATGC  264

seq1  AA--TTACACACACACACACATATATATACATACATACATATACACA  324
      ||  |  |  ||||||||||| | | | |||||||||||||||||||
seq2  AAGCTGTCGGACACACACACACACACACACATACATACATATACACA  311