BAC Information

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BAC

Clone NameB6Ng01-062F14
Chromosome2 (Build37)
Map Location 16,421,126 - 16,519,311
singlet/doubletdoublet
Overlap genePlxdc2
Upstream geneLOC625457
Downstream gene4930515L03Rik, LOC383665, Nebl
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-062F14.bB6Ng01-062F14.g
ACCDH882774DH882775
length1,1851,138
definitionDH882774|Mus musculus domesticus DNA, BAC clone: B6Ng01-062F14, 5' end.DH882775|Mus musculus domesticus DNA, BAC clone: B6Ng01-062F14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(16,421,126 - 16,422,335)(16,518,156 - 16,519,311)
sequence
gaattccatgttaaatttaagggctagtaacattaattttactcaataag
aatataggaaaaacaaaacaaaacagaacaaaccctcatttgtagcatcc
aaatacctatagcttattggacttcttaggctaagtacatagcaaattac
ccactgtcctcacaagtgcttgtatctagctttagtatctccccaaatta
ttttatgcatatttgtaaccactgtaacaacatacaaaaatcattgttat
ccttttggttttctacattttcctgattcagtagttcttcattgctgagg
tgtaagtcacattgacatagcatatttttacaccaactgtgagcagtctg
actttatgctgaagtgatgtgcatccatatctagatgtcaaataatgtaa
aatttaaatagcaataactgtcaccagattggttctctgagttctgtgtg
gctatttctttctatttatttttatgtttctgttaagagaaagtaggtcg
tgggacaataagtttattttctatcctattccttacccctccttctacct
tgtttaaaatttggactcttatatcagatatttgtgcatgctcttcacat
ggccagtcatcaatgaatttagtgcagttgtctcttgatttcagtcatat
gggtcattttcataactgtaatattggggttgtctgccatgggagctgag
tatttcttagaatttgggggctcagtagccgtatcaataaatggaaaata
gaagccacaaaatacctgttattcatacctttctggaaagatgaaaatag
tccaataatgtacataagaatttgagtcatctcaaggattacctaataat
gccctactatagttgcacaggcattaatacatgtttcttatttcatttgt
aagtataaatttactctaaaaatcaaatagtaacctgcttctgtctactt
ttgtaactactggttcagataaatatgtaggatatgtctaaagtatcagg
aataaaaattaacttcaaagatttagatgcacatattccttattccatca
catggtaacagacaatgtcgatcaatatcatctttccgatcttatactct
ggcaaggatttttaaattttaggaatagatcacaaacttaatgttatttt
agtcggtttgcgttcatttttcttttcttttttca
gaattcaaatgtgtctgtaaatgatgtagtgtgctaagtgttccctcagt
gcttccactaaccagctccatatggttatctattaaaaatgtgagcattc
tttatgaggacaagagaaaaaacatttgaagatgtgattagtctttaaac
tttcagaataaagaaatgaatcgattattcagatggggcttaaatatcca
tgtaatgaaaattactctttttctcctctcctctctaacacacacacaca
cacacacacacacacacacacacgaaaatggtaagaagacatagccaaaa
gatgttagataatgctgtctcaaaagatcagagagacgtggtcaataatc
caaggtatttcctgctagaggagaccagaagttgtcttaaacattctacc
caaggagggtttacccgttgaacaaggactttggactagtcataatactt
atagattttatagactattggattttactggattgagtactctttgaaaa
ctaatttctgttgtgctctgacaatgttttgtgaaaaatttacagcagta
aaataacataatactaacagaaaactgtttattttagccacatacacttt
tcccgttttatatatatatatatatatatatatatatatacacacacaca
tatatatgtatatatatatatatacacacacacacatatatatgtgtata
tatgcaaagatttaatttctctttacttgtaaggtattactggaatcaat
ttgttaagcaaaaaataactattttcattaaagcaaatactatattaaca
gggttataacacacaaacacttatatcacatatatagtcagttctatagc
aattacctgggtgttttaaagtcgatttttaaatagagtatgttgttagc
acttccgtaacttatgatatagtacatctctcttagccattcaaatatga
cataaaaatgagacacaaaagttgtagtaaaactgaaacagaatcatggt
gagtccaaactgtatagctgagtaaatattaaagaataaactaaagatga
gagaaggatctgatttctcattttcttgcaaagcaaaattgggctagtta
catgtcttcatcaccacgaaataagagaggaggctaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_16421126_16422335
seq2: B6Ng01-062F14.b_45_1229

seq1  GAATTCCATGTTAAATTTAAGGGCTAGTAACATTAATTTTACTCAATAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATGTTAAATTTAAGGGCTAGTAACATTAATTTTACTCAATAAG  50

seq1  AATATAGGAAAAACAAAACAAAACAGAACAAACCCTCATTTGTAGCATCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATAGGAAAAACAAAACAAAACAGAACAAACCCTCATTTGTAGCATCC  100

seq1  AAATACCTATAGCTTATTGGACTTCTTAGGCTAAGTACATAGCAAATTAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACCTATAGCTTATTGGACTTCTTAGGCTAAGTACATAGCAAATTAC  150

seq1  CCACTGTCCTCACAAGTGCTTGTATCTAGCTTTAGTATCTCCCCAAATTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTGTCCTCACAAGTGCTTGTATCTAGCTTTAGTATCTCCCCAAATTA  200

seq1  TTTTATGCATATTTGTAACCACTGTAACAACATACAAAAATCATTGTTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATGCATATTTGTAACCACTGTAACAACATACAAAAATCATTGTTAT  250

seq1  CCTTTTGGTTTTCTACATTTTCCTGATTCAGTAGTTCTTCATTGCTGAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTGGTTTTCTACATTTTCCTGATTCAGTAGTTCTTCATTGCTGAGG  300

seq1  TGTAAGTCACATTGACATAGCATATTTTTACACCAACTGTGAGCAGTCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAGTCACATTGACATAGCATATTTTTACACCAACTGTGAGCAGTCTG  350

seq1  ACTTTATGCTGAAGTGATGTGCATCCATATCTAGATGTCAAATAATGTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTATGCTGAAGTGATGTGCATCCATATCTAGATGTCAAATAATGTAA  400

seq1  AATTTAAATAGCAATAACTGTCACCAGATTGGTTCTCTGAGTTCTGTGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTAAATAGCAATAACTGTCACCAGATTGGTTCTCTGAGTTCTGTGTG  450

seq1  GCTATTTCTTTCTATTTATTTTTATGTTTCTGTTAAGAGAAAGTAGGTCG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATTTCTTTCTATTTATTTTTATGTTTCTGTTAAGAGAAAGTAGGTCG  500

seq1  TGGGACAATAAGTTTATTTTCTATCCTATTCCTTACCCCTCCTTCTACCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGACAATAAGTTTATTTTCTATCCTATTCCTTACCCCTCCTTCTACCT  550

seq1  TGTTTAAAATTTGGACTCTTATATCAGATATTTGTGCATGCTCTTCACAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTAAAATTTGGACTCTTATATCAGATATTTGTGCATGCTCTTCACAT  600

seq1  GGCCAGTCATCAATGAATTTAGTGCAGTTGTCTCTTGATTTCAGTCATAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAGTCATCAATGAATTTAGTGCAGTTGTCTCTTGATTTCAGTCATAT  650

seq1  GGGTCATTTTCATAACTGTAATATTGGGGTTGTCTGCCATGGGAGCTGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCATTTTCATAACTGTAATATTGGGGTTGTCTGCCATGGGAGCTGAG  700

seq1  TATTTCTTAGAATTTGGGGGCTCAGTAGCCGTATCAATAAATGGAAAATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCTTAGAATTTGGGGGCTCAGTAGCCGTATCAATAAATGGAAAATA  750

seq1  GAAGCCACAAAATACCTGTTATTCATACCTTTCTGGAAAGATGAAAATAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCCACAAAATACCTGTTATTCATACCTTTCTGGAAAGATGAAAATAG  800

seq1  TCCAATAATGTACATAAGAATTTGAGTCATCTCAAGGATTACCTAATAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAATAATGTACATAAGAATTTGAGTCATCTCAAGGATTACCTAATAAT  850

seq1  GCCCTACTATAGTTGCACAGGCATTAATACATGTTTCTTATTTCATTTGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTACTATAGTTGCACAGGCATTAATACATGTTTCTTATTTCATTTGT  900

seq1  AAGTAATAAAATTTACTCTAAAAATCAAATAGTAACCTGCTTCTGTCTAC  950
      |||||   ||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTA--TAAATTTACTCTAAAAATCAAATAGTAACCTGCTTCTGTCTAC  948

seq1  TTTTTGTAACTACTGGTTCAAGATAAATATGTAGGATTATGTCTAAAGTA  1000
       |||||||||||||||||| |||||||||||||||| |||||||||||||
seq2  -TTTTGTAACTACTGGTTC-AGATAAATATGTAGGA-TATGTCTAAAGTA  995

seq1  TCAGGAATAAAAATTAACTTCAAAAGATTTTAGAATGCACATATTCCCTA  1050
      ||||||||||||||||||||| ||||| ||||| ||||||||||||| ||
seq2  TCAGGAATAAAAATTAACTTC-AAAGA-TTTAG-ATGCACATATTCCTTA  1042

seq1  TTCCCATCAACATGGTAAACAGACAAATGTCAGATACAATATCATCTTTC  1100
      || ||||| ||||||| ||||||| |||||| ||| ||||||||||||||
seq2  TT-CCATC-ACATGGT-AACAGAC-AATGTC-GAT-CAATATCATCTTTC  1086

seq1  AGATCTTATACTCTGGCAAGGATTTTTATATTTTAGGAATAGATCACAAA  1150
       ||||||||||||||||||||||||||| ||||||||||||||||||  |
seq2  CGATCTTATACTCTGGCAAGGATTTTTAAATTTTAGGAATAGATCAC--A  1134

seq1  AACTTAAATGTTATTTTAGTCGAGGTTTTGCTGTTTTCATTTTTTCTTTT  1200
      ||||| |||||||||||||||  ||||    ||  |||||||||   |||
seq2  AACTT-AATGTTATTTTAGTC--GGTT----TGCGTTCATTTTT--CTTT  1175

seq1  TCTTTTTTCA  1210
      ||||||||||
seq2  TCTTTTTTCA  1185

seq1: chr2_16518156_16519311
seq2: B6Ng01-062F14.g_71_1208 (reverse)

seq1  TCTAGCCTTCCTCTTTTATTTTCTGTGGTAGATTGGAGACATTGTAACTA  50
      ||||||| |||||| ||||||   ||||| || || ||||| ||||||||
seq2  TCTAGCC-TCCTCTCTTATTT--CGTGGT-GA-TGAAGACA-TGTAACTA  44

seq1  GCCCAAATTTGCTTCTGCAGGAAAATGGAGAAATCAGGATCCTTTTCTCA  100
      |||||| ||||||| |||| |||||| ||||||||| ||||||| |||||
seq2  GCCCAATTTTGCTT-TGCAAGAAAAT-GAGAAATCA-GATCCTTCTCTCA  91

seq1  TTCTTTTAGTTTAATCTTTAAATATTTACTCAGCTATACAGTTTGGACTT  150
      |   ||||||||| ||||| ||||||||||||||||||||||||||||| 
seq2  T--CTTTAGTTTATTCTTT-AATATTTACTCAGCTATACAGTTTGGACTC  138

seq1  CACATGATTCTGTTTCAGTTTTACTTACAACTTTTGTGTCTCAATTTTTA  200
        |||||||||||||||||||||| ||||||||||||||||||  |||| 
seq2  ACCATGATTCTGTTTCAGTTTTAC-TACAACTTTTGTGTCTCA--TTTTT  185

seq1  ATGTCATATTTGAATGGCTAAAGAGAGATGTACTAAATCATAAGTTAACG  250
      ||||||||||||||||||| ||||||||||||||| |||||||||| |||
seq2  ATGTCATATTTGAATGGCT-AAGAGAGATGTACTATATCATAAGTT-ACG  233

seq1  GAAGTGCTAACAACATACTCTATTTAAAAATCGACTTTAAAAACACCCAG  300
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  GAAGTGCTAACAACATACTCTATTTAAAAATCGACTTT-AAAACACCCAG  282

seq1  GTAATTGCTATAGAACTGACTATATATGTGATATAAGTGTTTGTGTGTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATTGCTATAGAACTGACTATATATGTGATATAAGTGTTTGTGTGTTA  332

seq1  TAACCCTGTTAATATAGTATTTGCTTTAATGAAAATAGTTATTTTTTGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCCTGTTAATATAGTATTTGCTTTAATGAAAATAGTTATTTTTTGCT  382

seq1  TAACAAATTGATTCCAGTAATACCTTACAAGTAAAGAGAAATTAAATCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAAATTGATTCCAGTAATACCTTACAAGTAAAGAGAAATTAAATCTT  432

seq1  TGCATATATACACATATATATGTGTGTGTGTGTATATATATATATATACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATATATACACATATATATGTGTGTGTGTGTATATATATATATATACA  482

seq1  TATATATGTGTGTGTGTATATATATATATATATATATATATATATATAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATGTGTGTGTGTATATATATATATATATATATATATATATATAAA  532

seq1  ACGGGAAAAGTGTATGTGGCTAAAATAAACAGTTTTCTGTTAGTATTATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGGAAAAGTGTATGTGGCTAAAATAAACAGTTTTCTGTTAGTATTATG  582

seq1  TTATTTTACTGCTGTAAATTTTTCACAAAACATTGTCAGAGCACAACAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTACTGCTGTAAATTTTTCACAAAACATTGTCAGAGCACAACAGA  632

seq1  AATTAGTTTTCAAAGAGTACTCAATCCAGTAAAATCCAATAGTCTATAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAGTTTTCAAAGAGTACTCAATCCAGTAAAATCCAATAGTCTATAAA  682

seq1  ATCTATAAGTATTATGACTAGTCCAAAGTCCTTGTTCAACGGGTAAACCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTATAAGTATTATGACTAGTCCAAAGTCCTTGTTCAACGGGTAAACCC  732

seq1  TCCTTGGGTAGAATGTTTAAGACAACTTCTGGTCTCCTCTAGCAGGAAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTGGGTAGAATGTTTAAGACAACTTCTGGTCTCCTCTAGCAGGAAAT  782

seq1  ACCTTGGATTATTGACCACGTCTCTCTGATCTTTTGAGACAGCATTATCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTGGATTATTGACCACGTCTCTCTGATCTTTTGAGACAGCATTATCT  832

seq1  AACATCTTTTGGCTATGTCTTCTTACCATTTTCGTGTGTGTGTGTGTGTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATCTTTTGGCTATGTCTTCTTACCATTTTCGTGTGTGTGTGTGTGTG  882

seq1  TGTGTGTGTGTGTGTGTGTTAGAGAGGAGAGGAGAAAAAGAGTAATTTTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGTGTTAGAGAGGAGAGGAGAAAAAGAGTAATTTTC  932

seq1  ATTACATGGATATTTAAGCCCCATCTGAATAATCGATTCATTTCTTTATT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACATGGATATTTAAGCCCCATCTGAATAATCGATTCATTTCTTTATT  982

seq1  CTGAAAGTTTAAAGACTAATCACATCTTCAAATGTTTTTTCTCTTGTCCT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAAGTTTAAAGACTAATCACATCTTCAAATGTTTTTTCTCTTGTCCT  1032

seq1  CATAAAGAATGCTCACATTTTTAATAGATAACCATATGGAGCTGGTTAGT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAAGAATGCTCACATTTTTAATAGATAACCATATGGAGCTGGTTAGT  1082

seq1  GGAAGCACTGAGGGAACACTTAGCACACTACATCATTTACAGACACATTT  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGCACTGAGGGAACACTTAGCACACTACATCATTTACAGACACATTT  1132

seq1  GAATTC  1156
      ||||||
seq2  GAATTC  1138