BAC Information

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BAC

Clone NameB6Ng01-062F18
Chromosome2 (Build37)Y (Build37)
Map Location 54,558,966 - 54,560,1201,544,823 - 1,544,908
singlet/doubletsingletsinglet
Overlap geneGalnt13
Upstream geneRprm, LOC666913, LOC626563, LOC100041792, LOC100042878
Downstream geneLOC666936, Kcnj3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-062F18.bB6Ng01-062F18.g
ACCDH882782DH882783
length1,146108
definitionDH882782|Mus musculus domesticus DNA, BAC clone: B6Ng01-062F18, 5' end.DH882783|Mus musculus domesticus DNA, BAC clone: B6Ng01-062F18, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(54,558,966 - 54,560,120)(1,544,823 - 1,544,908)
sequence
gaattctctttgattacaagaaaaaccctgtgagcgatataagggctgag
gtgtgtgaaaagtacttcttccgtcagataaaacacaacaatcaagttct
acttccctttattaataatgcttctatataatgagaaacgcacatgaaga
ttcttttctttgatatttaactctgaagttgttttcataggaaactagcc
aatataaagataaacctttctcagacaaagctgatgatgacacaaaagct
cccgatacaatgctgaaaccaagggacagaactgaaaaccacatatatat
atcagtctttctccaaaggaaataggtggcaagtgacatgaaaggaagga
agggcaatcttaatgtgtaaggtattgaggcagatgcttccccgatactg
ctatccttattggtagattgaaataaaatatttttaatttcttaagttca
ttttgagattatgtataattacttcatttccccattacttcctactcttc
aaacctacctggagactcttccttgaactcctttgaattcatagaatgtt
aatgtaattaattgcttttgtatgcacatatttccccaaacaacttgctc
attctgtataaagttactttcattttttcatttttgttttagatcagttt
gttattgataaataattgacatgctacactctgagaaagactatttcttt
tcctttcaccgtttcttacttgcctgtagttctttatgtaggcttttctg
agaaggtggcatttggagcaaagtatgactttcagagttttcaaatgata
agatgaagttatgcttgacatttctaaagaaagtccccctgagctttcct
ctgtccatgttagcatgccttctgatattctccttgctaagttcatgttt
gagcagtcatgttgattagactttattggtataatttctgtcattactac
agacacaagctcatattaacgtcccttttctgtggtcttacatcttttta
acatctttcataatgttttctgactttaaggtatagaataatattttcat
tacactggctcacaatcactattttgattattgttatgtttttttctgta
atgtttattcatctgttgacagaaaaattacttttatgagaattac
atttttaatggggcaggaaggggaaagagagagagagagagagagagaga
gagagagagagagagagagagagagagagagagagagagagagagagaga
gagagaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_54558966_54560120
seq2: B6Ng01-062F18.b_42_1187

seq1  GAATTCTCTTTGATTACAAGAAAAACCCTGTGAGCGATATAAGGGCTGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTTGATTACAAGAAAAACCCTGTGAGCGATATAAGGGCTGAG  50

seq1  GTGTGTGAAAAGTACTTCTTCCGTCAGATAAAACACAACAATCAAGTTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGAAAAGTACTTCTTCCGTCAGATAAAACACAACAATCAAGTTCT  100

seq1  ACTTCCCTTTATTAATAATGCTTCTATATAATGAGAAACGCACATGAAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCCCTTTATTAATAATGCTTCTATATAATGAGAAACGCACATGAAGA  150

seq1  TTCTTTTCTTTGATATTTAACTCTGAAGTTGTTTTCATAGGAAACTAGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTTCTTTGATATTTAACTCTGAAGTTGTTTTCATAGGAAACTAGCC  200

seq1  AATATAAAGATAAACCTTTCTCAGACAAAGCTGATGATGACACAAAAGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATAAAGATAAACCTTTCTCAGACAAAGCTGATGATGACACAAAAGCT  250

seq1  CCCGATACAATGCTGAAACCAAGGGACAGAACTGAAAACCACATATATAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGATACAATGCTGAAACCAAGGGACAGAACTGAAAACCACATATATAT  300

seq1  ATCAGTCTTTCTCCAAAGGAAATAGGTGGCAAGTGACATGAAAGGAAGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGTCTTTCTCCAAAGGAAATAGGTGGCAAGTGACATGAAAGGAAGGA  350

seq1  AGGGCAATCTTAATGTGTAAGGTATTGAGGCAGATGCTTCCCCGATACTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCAATCTTAATGTGTAAGGTATTGAGGCAGATGCTTCCCCGATACTG  400

seq1  CTATCCTTATTGGTAGATTGAAATAAAATATTTTTAATTTCTTAAGTTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCCTTATTGGTAGATTGAAATAAAATATTTTTAATTTCTTAAGTTCA  450

seq1  TTTTGAGATTATGTATAATTACTTCATTTCCCCATTACTTCCTACTCTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAGATTATGTATAATTACTTCATTTCCCCATTACTTCCTACTCTTC  500

seq1  AAACCTACCTGGAGACTCTTCCTTGAACTCCTTTGAATTCATAGAATGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCTACCTGGAGACTCTTCCTTGAACTCCTTTGAATTCATAGAATGTT  550

seq1  AATGTAATTAATTGCTTTTGTATGCACATATTTCCCCAAACAACTTGCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTAATTAATTGCTTTTGTATGCACATATTTCCCCAAACAACTTGCTC  600

seq1  ATTCTGTATAAAGTTACTTTCATTTTTTCATTTTTGTTTTAGATCAGTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGTATAAAGTTACTTTCATTTTTTCATTTTTGTTTTAGATCAGTTT  650

seq1  GTTATTGATAAATAATTGACATGCTACACTCTGAGAAAGACTATTTCTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATTGATAAATAATTGACATGCTACACTCTGAGAAAGACTATTTCTTT  700

seq1  TCCTTTCACCGTTTCTTACTTGCCTGTAGTTCTTTATGTAGGCTTTTCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTCACCGTTTCTTACTTGCCTGTAGTTCTTTATGTAGGCTTTTCTG  750

seq1  AGAAGGTGGCATTTGGAGCAAAGTATGACTTTCAGAGTTTTCAAATGATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGTGGCATTTGGAGCAAAGTATGACTTTCAGAGTTTTCAAATGATA  800

seq1  AGATGAAGTTATGCTTGACATTTCTAAAGAAAGTCCCCCTGAGCTTTCCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGAAGTTATGCTTGACATTTCTAAAGAAAGTCCCCCTGAGCTTTCCT  850

seq1  CTGTCCATGTTAGCATGCCTTCTGATATTCTCCTTGCTAAGTTCATGTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCCATGTTAGCATGCCTTCTGATATTCTCCTTGCTAAGTTCATGTTT  900

seq1  GAGCAGTCATGTTGATTAGACTTTATTGGTATAATTTCTGTCATTACTAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGTCATGTTGATTAGACTTTATTGGTATAATTTCTGTCATTACTAC  950

seq1  AAGACACAAGCTCATATTAAGGTCCCTTTTCTGTTGGTCTTACAATCTTT  1000
       ||||||||||||||||||| |||||||||||| ||||||||| ||||||
seq2  -AGACACAAGCTCATATTAACGTCCCTTTTCTG-TGGTCTTAC-ATCTTT  997

seq1  TTAACATCTTTCAT-ATGTTTCCTGAACTTTAGGTATAGAAT-ATATATC  1048
      |||||||||||||| |||||| ||||  || ||||||||||| |||| | 
seq2  TTAACATCTTTCATAATGTTTTCTGACTTTAAGGTATAGAATAATATTTT  1047

seq1  CATTACAACTGGGCTCCACAATTCACTATTTTGATTAATTGTTTATG-TT  1097
      |||||| ||| |||| ||||| |||||||||||||| |||| ||||| ||
seq2  CATTAC-ACT-GGCT-CACAA-TCACTATTTTGATT-ATTG-TTATGTTT  1091

seq1  TTTTCTGTAATGGTTTATTCCATCTGTTGAACAGAAAAATTACTTTAATG  1147
      ||||||||||| ||||||| ||||||||| |||||||||||||||| |||
seq2  TTTTCTGTAAT-GTTTATT-CATCTGTTG-ACAGAAAAATTACTTTTATG  1138

seq1  AGAATTAC  1155
      ||||||||
seq2  AGAATTAC  1146

seq1: chrY_1544823_1544908
seq2: B6Ng01-062F18.g_94_179

seq1  GAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA  50

seq1  GAGAGAGAGAGAAAGAGAGAGAGAGAAAGAGAGAGA  86
      |||||||||||| ||||||||||||| |||||||||
seq2  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA  86