BAC Information

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BAC

Clone NameB6Ng01-062F19
Chromosome2 (Build37)
Map Location 152,064,774 - 152,065,952
singlet/doubletsinglet
Overlap geneCsnk2a1
Upstream geneLOC100043839, LOC100043840, 4921509C19Rik, Nsfl1c, Fkbp1a, Sdcbp2, Snph, LOC668929, BC052486, 5430405G05Rik, Psmf1, Rspo4, Angpt4, 5430432M24Rik, 2310046K01Rik, Scrt2, Srxn1, Tcf15, LOC100043843
Downstream geneTbc1d20, Rbck1, Trib3, LOC628060, Nrsn2, Sox12, Zcchc3, 6820408C15Rik, EG629114, LOC668930, 9230107O10Rik, 9230002F21Rik, EG654457, OTTMUSG00000015852, Defb29, 4930525K10Rik, Defb19, OTTMUSG00000015859, Defb36, OTTMUSG00000015862, Rem1, H13, Mcts2, Id1, LOC629170, Cox4i2, Bcl2l1, Tpx2, Mylk2, Fkhl18, Dusp15, Ttll9, Pdrg1, Xkr7, BC020535, Hck, Tm9sf4, Tspyl3, Plagl2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-062F19.bB6Ng01-062F19.g
ACCDH882784DH882785
length1,150641
definitionDH882784|Mus musculus domesticus DNA, BAC clone: B6Ng01-062F19, 5' end.DH882785|Mus musculus domesticus DNA, BAC clone: B6Ng01-062F19, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaattgtcatttggctgtccccatagactctgtttacaagtgatt
ttgtttacttgtttttaagatgtgccctctatgtatagtctgttttgaaa
tttgctatctcgaccagatggaccttgaacttgtaaggattgtcctgcct
ctgtcttaagtgtaaggtttatagtcattacatatatctccacacctggc
acaagtcataaactctgcattggagttactctggttggttggttggtttt
ttgagacaaggtttttatatgtagaccagactgtcctcaaactcagagat
ccacttgcctctgccgcccaagtgctgggattaaaggtgtatgccaaaac
caactgattgatctcatttttgtttttttctccttttggggttaatgctt
ttgaggcagggtctagcctgtataactaagactggtcttgaatttgagtt
cttttgtcttggcctcctgcatgctgagattacaggggtaaaccataatt
cacagtgaaggtactttgatggctctgtgatattgggtgtatgtttgaac
ctaatacctcaaatgtgctcatagctgagctgtagccccagacttcaaac
tcacctctctctttttccttttgtttgtccctaaggtaccagagattgag
cctgtggttttgcacatgctagacagtcttcagagccttcatatttttaa
aatgtaaagacagtttgttaagacctagtaatcagaatagtaaatattca
aacatgttgattttttttcctttgtaatttagttggagacttttaatttt
tcaatggaattttaatgaaaattagcttctattcatctgtctttctggac
agttttcctcccaaaatatagcattccacatttttgatgtactggagact
tttcaggtatcagtcctaaggacttgcgtatccattggcagctacctagg
ttcttgtctagttaagtgtagttgtgttcctggctttgtttttccgtcat
attgacagtttctagaaacttgtaccagattacttcatacactttaaacc
agctttgtttaaagcttctctcacgtagaaccaccccacttccacctacc
tacatctatgtaagctcagcagtgtgtttatttgcttaggttcttgagac

gaattccatgagctggtaaactcttatatctgttgagcctccagctgatc
ttgtaccagttgttcaagtgcctgcaatttttcttttattattggccact
gctcttgccatacaggtctgtaagggcaaggatgttggtatgtcagcagt
gcccccttttaaaatgtggaaattcaatccctggatatcctgttttggac
catggacacatgtagtagtttgaatatgctttggccatgggagtctcttc
acaacaatggaaaccctaactaagacagaagttggcaccataaactgggg
tattgctgtgataggcctggttatggttttgtttggaggatgtggatctg
ggaagcaggagaatcctttatgtgggaattaatggaagacagtggtgctg
aggatgatctgaactgggcagacctggtccaagaggtttcggtggaaaag
agtgttagtatgtgactgagagtttcttgtgatattttggtgaaaaatag
gactactttttgccattgttcaaagagtctgcctgaggctaaggtaaaga
gatttagattaattgctttgacaaaggaagtctcaaaacagcctgctata
aattttattgtatgttggagatggggtcggaggaatgggat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_152064774_152065952
seq2: B6Ng01-062F19.b_43_1192

seq1  GAATTCAATTGTCATTTGGCTGTCCCCATAGACTCTGTTTACAAGTGATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATTGTCATTTGGCTGTCCCCATAGACTCTGTTTACAAGTGATT  50

seq1  TTGTTTACTTGTTTTTAAGATGTGCCCTCTATGTATAGTCTGTTTTGAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTACTTGTTTTTAAGATGTGCCCTCTATGTATAGTCTGTTTTGAAA  100

seq1  TTTGCTATCTCGACCAGATGGACCTTGAACTTGTAAGGATTGTCCTGCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTATCTCGACCAGATGGACCTTGAACTTGTAAGGATTGTCCTGCCT  150

seq1  CTGTCTTAAGTGTAAGGTTTATAGTCATTACATATATCTCCACACCTGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTTAAGTGTAAGGTTTATAGTCATTACATATATCTCCACACCTGGC  200

seq1  ACAAGTCATAAACTCTGCATTGGAGTTACTCTGGTTGGTTGGTTGGTTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGTCATAAACTCTGCATTGGAGTTACTCTGGTTGGTTGGTTGGTTTT  250

seq1  TTGAGACAAGGTTTTTATATGTAGACCAGACTGTCCTCAAACTCAGAGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGACAAGGTTTTTATATGTAGACCAGACTGTCCTCAAACTCAGAGAT  300

seq1  CCACTTGCCTCTGCCGCCCAAGTGCTGGGATTAAAGGTGTATGCCAAAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTTGCCTCTGCCGCCCAAGTGCTGGGATTAAAGGTGTATGCCAAAAC  350

seq1  CAACTGATTGATCTCATTTTTGTTTTTTTCTCCTTTTGGGGTTAATGCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTGATTGATCTCATTTTTGTTTTTTTCTCCTTTTGGGGTTAATGCTT  400

seq1  TTGAGGCAGGGTCTAGCCTGTATAACTAAGACTGGTCTTGAATTTGAGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGGCAGGGTCTAGCCTGTATAACTAAGACTGGTCTTGAATTTGAGTT  450

seq1  CTTTTGTCTTGGCCTCCTGCATGCTGAGATTACAGGGGTAAACCATAATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGTCTTGGCCTCCTGCATGCTGAGATTACAGGGGTAAACCATAATT  500

seq1  CACAGTGAAGGTACTTTGATGGCTCTGTGATATTGGGTGTATGTTTGAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTGAAGGTACTTTGATGGCTCTGTGATATTGGGTGTATGTTTGAAC  550

seq1  CTAATACCTCAAATGTGCTCATAGCTGAGCTGTAGCCCCAGACTTCAAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATACCTCAAATGTGCTCATAGCTGAGCTGTAGCCCCAGACTTCAAAC  600

seq1  TCACCTCTCTCTTTTTCCTTTTGTTTGTCCCTAAGGTACCAGAGATTGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCTCTCTCTTTTTCCTTTTGTTTGTCCCTAAGGTACCAGAGATTGAG  650

seq1  CCTGTGGTTTTGCACATGCTAGACAGTCTTCAGAGCCTTCATATTTTTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTGGTTTTGCACATGCTAGACAGTCTTCAGAGCCTTCATATTTTTAA  700

seq1  AATGTAAAGACAGTTTGTTAAGACCTAGTAATCAGAATAGTAAATATTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTAAAGACAGTTTGTTAAGACCTAGTAATCAGAATAGTAAATATTCA  750

seq1  AACATGTTGATTTTTTTTCCTTTGTAATTTAGTTGGAGACTTTTAATTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATGTTGATTTTTTTTCCTTTGTAATTTAGTTGGAGACTTTTAATTTT  800

seq1  TCAATGGAATTTTAATGAAAATTAGCTTCTATTCATCTGTCTTTCTGGAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATGGAATTTTAATGAAAATTAGCTTCTATTCATCTGTCTTTCTGGAC  850

seq1  AGTTTTCCTCCCAAAATATAGCATTCCACATTTTTGATGTACTGGAGACT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTCCTCCCAAAATATAGCATTCCACATTTTTGATGTACTGGAGACT  900

seq1  TTTCAGGTATCAGTCCTAAGGACTTGCGTATCCATTGGCAGCTACCTAGG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGGTATCAGTCCTAAGGACTTGCGTATCCATTGGCAGCTACCTAGG  950

seq1  TTCTTGTCTAGTTAAGTGTAGTTGTGTTCCTGGCTTTTGTTTCTCCCGTC  1000
      |||||||||||||||||||||||||||||||||| ||||||| | |||||
seq2  TTCTTGTCTAGTTAAGTGTAGTTGTGTTCCTGGC-TTTGTTT-TTCCGTC  998

seq1  ATATTTGACAGTTTCTAGAAAACTTGTACCAAGATAACCTTCATACACCT  1050
      ||| |||||||||||||| ||||||||||| |||| | ||||||||| ||
seq2  ATA-TTGACAGTTTCTAG-AAACTTGTACC-AGATTA-CTTCATACA-CT  1043

seq1  TTAAAACAAAGGCTTTGTTTTAAAAGCTTCTCTCACCGTAGAACCACCCC  1100
      ||||| ||   |||||||||  ||||||||||||| ||||||||||||||
seq2  TTAAACCA---GCTTTGTTT--AAAGCTTCTCTCA-CGTAGAACCACCCC  1087

seq1  ATCTCCACCTCACCTTACATCTAATGT-AGCTCAAGGCAGTAGTTTGTTT  1149
      |  ||||||| ||| ||||||| |||| ||||||  |||||       | 
seq2  ACTTCCACCT-ACC-TACATCT-ATGTAAGCTCA--GCAGT------GTG  1126

seq1  TTTATTTTGTTTTATGTTTTCTCTTGAGAC  1179
      |||||||    ||| ||    |||||||||
seq2  TTTATTT--GCTTAGGT----TCTTGAGAC  1150