BAC Information

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BAC

Clone NameB6Ng01-062F21
Chromosome2 (Build37)
Map Location 85,385,477 - 85,386,628
singlet/doubletsinglet
Overlap genenone
Upstream geneCtnnd1, 2700094K13Rik, Txndc14, Med19, Zdhhc5, Clp1, Ypel4, Serping1, Ube2l6, Smtnl1, Timm10, Slc43a1, Rtn4rl2, Slc43a3, Prg2, Prg3, P2rx3, Ssrp1, Tnks1bp1, Agtrl1, LOC625033, Lrrc55, Olfr987, GA_x5J8B7W531T-1241080-1240524, Olfr988, GA_x5J8B7W531T-1286425-1285652, Olfr990-ps1, Olfr991-ps1, Olfr992, Olfr993, Olfr994, Olfr995, 4833423E24Rik
Downstream geneOlfr996, Olfr997-ps1, Olfr998, Olfr999-ps1, Olfr1000, Olfr1001-ps1, Olfr1002, GA_x5J8B7W531T-1558688-1559570, Olfr1004-ps1, Olfr154, GA_x5J8B7W531T-1577060-1577325, Olfr1006, GA_x5J8B7W531T-1588603-1588734, Olfr1008, Olfr1009, Olfr1010, Olfr1012, Olfr1013, Olfr1014, Olfr1015, Olfr1016, GA_x5J8B7W3KVV-518538-519236, Olfr1018, Olfr1019, Olfr1020, Olfr1021-ps1, Olfr1022, Olfr1023, Olfr1024, Olfr1025-ps1, Olfr1026, Olfr1027-ps1, Olfr1028, Olfr1029, Olfr1030, Olfr1031, Olfr1032, LOC100042075, Olfr1033, Olfr1034, Olfr1533-ps1, Olfr1035-ps1, Olfr1036, Olfr1037, LOC100041372, Olfr1038, Olfr1039, Olfr1040, GA_x5J8B7W3KVV-170014-170572, Olfr1042, Olfr1043, Olfr1044, Olfr52, Olfr1045, Olfr1046, Olfr1047, Olfr1048, Olfr1049, Olfr1050-ps1, Olfr1051, GA_x5J8B7W3KVV-25848-25992, Olfr1052, Olfr1053-ps1, Olfr1054, Olfr1055, Olfr1056, Olfr1057, GA_x5J8B7TRQ4E-1174-939, Olfr1058, Olfr1059-ps1, Olfr1515, Olfr1062, Olfr1063-ps1, Olfr1064-ps1, Olfr1065, Olfr1066, Olfr1069-ps1, Olfr1070-ps1, Olfr228, Olfr1073-ps1, Olfr1075-ps1, GA_x5J8B7W4CQV-104617-103730, Olfr1076, LOC625853, Olfr1078-ps1, GA_x5J8B7W4CQV-78329-78805, Olfr1079
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-062F21.bB6Ng01-062F21.g
ACCDH882788DH882789
length1,2911,140
definitionDH882788|Mus musculus domesticus DNA, BAC clone: B6Ng01-062F21, 5' end.DH882789|Mus musculus domesticus DNA, BAC clone: B6Ng01-062F21, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcttttccatgatgtgcaaagtaaaatagataaatgaaaataaaca
aatacatcgaactctcaaaatgtaaagttttactttgttagaaacttggt
taagaaaatgaaagccttagtgcagagttgatgaaaaaaggttttgtatc
taaaccaaataaacaatcacacaaagaataaaagaaaaaccaagttagaa
aattggaaaaatatatgaaaaaactatttcaccagggaggggtgtatatg
catgaatacatgaaaaccactcaggctttattagccattaagaagatgca
aattatcaacatgatgggatattatcataccaagcatgatgagcgatttc
tgctcagccatcttcattgcaaacataaaaacagtggcaaaactaaagct
agcaaagacttggagctatgggtcttttatagattgttgggggcatgcaa
aatgtcataactattctccaaaataacttggaagtatttaaggaatccaa
acatacagtccagttcctgtactcatagccaattttgcttacacaaaact
tatgcttatgtcaaaatgtgcaaaagtttcaaaaaagcttcattggcaat
aatttaaaagtgtcaacagctaaaatgttctttagcaaaatgttggttaa
acaaatctcattatgttacactgtgaaacagcacttagagagaagtaaat
gtgggcaactggtgactctccattgcaatgtctaatttgaaaaggtcata
tagtgtatgattttacttataacgtcatcaagatggcaagattttaagat
aaaggtgaaagtagtgattgacttgaattagaattagtagtggttgaggt
agtgtgtttttaagtggaagatgtgacagatctatgttgatatttgatat
cttgtctaacatgaaggtaatgggatctatcgaaagaagtgagaaatgcc
atatgactattggatactgtaccaatatcaagctctgggttatatgcaac
cttattgttataggatggaatcattgagggaaatagctaagggatgtggg
attttctgagtcttcttaaattctcttgtatcttagaacgtaaatctgga
aaaattagagaaaaacgagggctacttaccgaattcatggatctgagcta
gtattcgactctagtcagacagacctgattgactcctcgaaatgcggtga
cctacctacctgatttatttattttcatatagtaattctacgtcttcact
tccaggaagtgactctactcgaaagtagagaataagcgtac
gaattcacacatctctgtgtcttcctatattccatatgcttcttcctgtt
gcacctactactgtatagaaaaacagccttgacaatgtaggggatcctca
gtattccaccttcttaaaatcaaatcattagctggggaatccaatagtgt
gaacaataacatagaccatgtggtcatcatggaaaccagtgaaaccagag
gattcatataaatccaagagactgttcccatcccattctcaaaaacaaaa
aacaaacaagcaaacaaaaaacccttccaactctccttttttctttcttt
ttttttgagtacctatatattttttattaaatattttctttatttatatt
tcaaatgttatcctctttccaggttcccccacacacaccttccaggtttc
cttccaggaaatcccctatcacatccccctccccctgcttctatgagggt
gtttcctccacctacctacccactcctgcctccctgccctcaattcccct
acactggggcatctattgagccttcataggaccaaggacctctcttccca
ttgatgcctgataaggccatcctctactacatatgcagctggagccatgt
gtactctttggttggtagcttagtccctgggagctacgaggggtctggtt
ggttgatattgttgttcttcctatgtggttgcaaaccccttcagctcctt
cagtcctttctctaactcttccattggggacccaacgctcagtccaatgg
ttgtctgtgagcatccacctctgtatttgtaaggctctagcagggcctct
caggagacagatatattaatgtgtctaggaaatcaccttgtttgagaata
gaaaaagaagtttctgaagcccaggcctgtaagagatcaccagctcaatt
gcattgaacagtctctagtggcccctgctattaagcagcatataggatca
taatgaataaaataaataaaactgtaaacatccaaaaattaaatataaat
acgtgtacatctgaataaaatatggtcagatctgtccctttgcttcatac
ggattcatcattaacattcataggcgatttaataggagattttatggctc
ttctgtctaggctactttcagaaaggctggctcactctga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_85385477_85386628
seq2: B6Ng01-062F21.g_67_1206 (reverse)

seq1  TCAGAGTGAGCAAAGCTATCCTGGAAAAGTAGACCTAGACAGAAGAGCCA  50
      |||||||||||  |||  | |||  ||||||| |||||||||||||||||
seq2  TCAGAGTGAGC-CAGCCTTTCTG--AAAGTAG-CCTAGACAGAAGAGCCA  46

seq1  TAAAAATCTACCTAATAAATACAGACTATGAATGTTAGATGATGAATACC  100
      | ||||||| |||| |||||   | |||||||||||| ||||||||| ||
seq2  T-AAAATCT-CCTATTAAAT--CGCCTATGAATGTTA-ATGATGAAT-CC  90

seq1  GTATGAAGCAAAGGGACAGATCTGACCATATTTTATTCAGATGTACACGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGAAGCAAAGGGACAGATCTGACCATATTTTATTCAGATGTACACGT  140

seq1  AATTTATATTTAATTTTTTGGATGTTTACAGTTTTATTTATTTTATTCAT  200
       |||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  -ATTTATATTTAA-TTTTTGGATGTTTACAGTTTTATTTATTTTATTCAT  188

seq1  TATGATCCTATATGCTGCTTAATAGCAGGGGCCACTAGAGACTGTTCAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGATCCTATATGCTGCTTAATAGCAGGGGCCACTAGAGACTGTTCAAT  238

seq1  GCAATTGAGCTGGTGATCTCTTACAGGCCTGGGCTTCAGAAACTTCTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATTGAGCTGGTGATCTCTTACAGGCCTGGGCTTCAGAAACTTCTTTT  288

seq1  TCTATTCTCAAACAAGGTGATTTCCTAGACACATTAATATATCTGTCTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTCTCAAACAAGGTGATTTCCTAGACACATTAATATATCTGTCTCC  338

seq1  TGAGAGGCCCTGCTAGAGCCTTACAAATACAGAGGTGGATGCTCACAGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAGGCCCTGCTAGAGCCTTACAAATACAGAGGTGGATGCTCACAGAC  388

seq1  AACCATTGGACTGAGCGTTGGGTCCCCAATGGAAGAGTTAGAGAAAGGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCATTGGACTGAGCGTTGGGTCCCCAATGGAAGAGTTAGAGAAAGGAC  438

seq1  TGAAGGAGCTGAAGGGGTTTGCAACCACATAGGAAGAACAACAATATCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGAGCTGAAGGGGTTTGCAACCACATAGGAAGAACAACAATATCAA  488

seq1  CCAACCAGACCCCTCGTAGCTCCCAGGGACTAAGCTACCAACCAAAGAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACCAGACCCCTCGTAGCTCCCAGGGACTAAGCTACCAACCAAAGAGT  538

seq1  ACACATGGCTCCAGCTGCATATGTAGTAGAGGATGGCCTTATCAGGCATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATGGCTCCAGCTGCATATGTAGTAGAGGATGGCCTTATCAGGCATC  588

seq1  AATGGGAAGAGAGGTCCTTGGTCCTATGAAGGCTCAATAGATGCCCCAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGGAAGAGAGGTCCTTGGTCCTATGAAGGCTCAATAGATGCCCCAGT  638

seq1  GTAGGGGAATTGAGGGCAGGGAGGCAGGAGTGGGTAGGTAGGTGGAGGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGGGAATTGAGGGCAGGGAGGCAGGAGTGGGTAGGTAGGTGGAGGAA  688

seq1  ACACCCTCATAGAAGCAGGGGGAGGGGGATGTGATAGGGGATTTCCTGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCCTCATAGAAGCAGGGGGAGGGGGATGTGATAGGGGATTTCCTGGA  738

seq1  AGGAAACCTGGAAGGTGTGTGTGGGGGAACCTGGAAAGAGGATAACATTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAACCTGGAAGGTGTGTGTGGGGGAACCTGGAAAGAGGATAACATTT  788

seq1  GAAATATAAATAAAGAAAATATTTAATAAAAAATATATAGGTACTCAAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATATAAATAAAGAAAATATTTAATAAAAAATATATAGGTACTCAAAA  838

seq1  AAAAAGAAAGAAAAAAGGAGAGTTGGAAGGGTTTTTTGTTTGCTTGTTTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGAAAGAAAAAAGGAGAGTTGGAAGGGTTTTTTGTTTGCTTGTTTG  888

seq1  TTTTTTGTTTTTGAGAATGGGATGGGAACAGTCTCTTGGATTTATATGAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTGTTTTTGAGAATGGGATGGGAACAGTCTCTTGGATTTATATGAA  938

seq1  TCCTCTGGTTTCACTGGTTTCCATGATGACCACATGGTCTATGTTATTGT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTGGTTTCACTGGTTTCCATGATGACCACATGGTCTATGTTATTGT  988

seq1  TCACACTATTGGATTCCCCAGCTAATGATTTGATTTTAAGAAGGTGGAAT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACACTATTGGATTCCCCAGCTAATGATTTGATTTTAAGAAGGTGGAAT  1038

seq1  ACTGAGGATCCCCTACATTGTCAAGGCTGTTTTTCTATACAGTAGTAGGT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGGATCCCCTACATTGTCAAGGCTGTTTTTCTATACAGTAGTAGGT  1088

seq1  GCAACAGGAAGAAGCATATGGAATATAGGAAGACACAGAGATGTGTGAAT  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACAGGAAGAAGCATATGGAATATAGGAAGACACAGAGATGTGTGAAT  1138

seq1  TC  1152
      ||
seq2  TC  1140