BAC Information

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BAC

Clone NameB6Ng01-062G22
Chromosome2 (Build37)
Map Location 148,550,762 - 148,551,873
singlet/doubletsinglet
Overlap geneNapb
Upstream geneLOC100043820, Foxa2, LOC383752, Sstr4, Thbd, Cd93, Nxt1, Gzf1
Downstream geneCstl1, Cst11, 8030411F24Rik, Cst12, Cst8, Cst13, Cst9, 9230104L09Rik, Cst3, OTTMUSG00000015744, Gm1330, EG668921, LOC433483, LOC383754, LOC100043593, LOC241715, Cst10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-062G22.bB6Ng01-062G22.g
ACCDH882830DH882831
length1,2521,096
definitionDH882830|Mus musculus domesticus DNA, BAC clone: B6Ng01-062G22, 5' end.DH882831|Mus musculus domesticus DNA, BAC clone: B6Ng01-062G22, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaatttctttcccccaaaacacaggataattaaatggatgtgaaa
acaggatctatccttctgctgcatccaagaaatacacctcaatgtgaatg
atagacattacctcatggtaaagggttggaaaataattttccaagtaaaa
agacccaagaagcaagatggtatagccattctcatacctaacaaaataga
cttccaaccaaaacaaatcaaaagagatgaggaaggaacttcatactcat
cagaggaaaaatccaccaagatgatacccaattctcagcatctctccccc
aaatacaagggcatccatccattatgtaaaagaaacattactaaagttta
aatcaacatccaacccaacacattagtactgagagacttcagtaccccac
tttcacaaaatggtcaggccctccagacaaaaatcaaacagagaaataat
ggagctaagagaggttaggactaaaatggacctaacaggtatctacagaa
catttcacccaaacacaaatgaatataccttcttctcagcacctcaggaa
actttctccaaaattgaccacatcctcagttacaaagaaatctcaataga
tacaagaaaattgaaataacttcctgtatcctatcagatcaccactgatt
aaagttggattttaacaataacagaaattgcagacagcctagaaactcat
ggaaactgaacaatttagtactgaatgactactgggccaaggcagaaata
aagaaagaaatgaaagagttcctagaatttaatgaaaatgaaggtacaac
atacccaaacttatgggacacaatgaaagcagtgttaagaggaaagttca
taacactaagtgccttcataaagaagatagagagatctcatattagtaac
ttaccagcacacccgaaagctttagaacaaaaggaacaaatacacccaga
ggagtatatggcaggaataatcaaacccaggactgaaacaaatgaaataa
aaataaagagacaatacaaagcatcaatgaaacaaagagtcggttctttg
agaaatcacagacagaaaacccttattcattactaaaggcgaggaagaag
agaagagaaattctaataacaaaacaaaacaaacggggaacatacatgtg
tgaaatcaaagatctgaattatttcaaatctattccgattgaagatgcaa
ttgaagaccgttacaatatcagaatcgataacactaatgacttaaacctg
ag
gaattcttaaactgctttgactgtatactgtaggacctgatacatagtgc
tttgatcttaagtctgtttgctctttgatctaggagttgctgggggcatc
cttctagacagaagagacttaaaattttttttgttgttgttaaatttctg
ttttatttccttgtaattagaaaaccaacaatgatctttcttctttcttt
gctgcctaatatgttatcagtgctcatgaatggtcatatgaaggtggatg
tttgcttctcagtttgatacagatatataatatctaactactgattatat
aattaggactaggccatttgtgtctttatttatttgatatgctttggact
gagagaagcgtgttaatgtcttgtctttttgtgtttctgtggatctccta
tagtttctgctttaagaaagtgactattgctttattcagttaatacaatt
ccattatgatctttatctttagtattatagaatgagcttattttatctta
catgatgcttttgagtccaaaatctaccgtgtccattctagaatactagg
atgtttttaaacatgtcttacatgtttttaaattgtgtacatttcctaag
ttgtgactatgtgttatataagaaagagtcattccagtggccatgtgtcc
tgtgtcagccggcttctcctttcccacaagctgtgatggctttgtgactg
actctggggaagttaagtggaaaggacatatacttctcctggaactgcag
gcctatcctgtgcttctgccgagtctttattctcttgagacattaagaag
gggacaccctgggtgtagaatgagggcccttaggaaagaaccaacatcac
aaccgtcctgcgggtgaattgagctagagaagcctttcaggatggcaggg
ctacttgagctgtgtgtgacacagataacggagttgctgttgtgtgctgg
tttgtttatattttacatagagtctcactgtttacctctggctggctaga
ttcagtatgtagaccagacttggtctaaacttctggttatgtttttatcc
acttttaaaacctttttaatttaacatagatagtattagctacatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_148550762_148551873
seq2: B6Ng01-062G22.g_67_1162 (reverse)

seq1  CATGTAGGCTAAATACCTATCTATGTAAAATAAAAAAGATTTTTAAAAGG  50
      |||||| ||| |||| |||||||||| |||| |||||| ||||  ||| |
seq2  CATGTA-GCT-AATA-CTATCTATGTTAAATTAAAAAGGTTTT--AAAAG  45

seq1  TGGTATAAAAAACATACACCAGAAGTTTAAGACC-AGTCTGGTCTACATA  99
      ||| || ||||||||| ||||||||||| ||||| |||||||||||||| 
seq2  TGG-AT-AAAAACATA-ACCAGAAGTTT-AGACCAAGTCTGGTCTACAT-  90

seq1  ACTGAGTCTAGGCCAGCCAGAGGTAAACAGTGAGACTCTATGTAAAATAT  149
      ||||| |||| |||||||||||||||||||||||||||||||||||||||
seq2  ACTGAATCTA-GCCAGCCAGAGGTAAACAGTGAGACTCTATGTAAAATAT  139

seq1  AAAACAAAACCAGCACACAACAGCCAACTCCGTTATCTGTGTCACAACAC  199
      |||   ||||||||||||||||| ||||||||||||||||||||| ||||
seq2  AAA--CAAACCAGCACACAACAG-CAACTCCGTTATCTGTGTCAC-ACAC  185

seq1  AAGCTCAAGTAGCCCTGCCATCCTGTAAAGGCTTCTCTAGCTCAATTCAC  249
       |||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  -AGCTCAAGTAGCCCTGCCATCCTG-AAAGGCTTCTCTAGCTCAATTCAC  233

seq1  CCGCAGGACGGTTGTGATGTTGGTTCTTTCCTAAGGGCCCTCATTCTACA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCAGGACGGTTGTGATGTTGGTTCTTTCCTAAGGGCCCTCATTCTACA  283

seq1  CCCAGGGTGTCCCCTTCTTAATGTCTCAAGAGAATAAAGACTCGGCAGAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGGTGTCCCCTTCTTAATGTCTCAAGAGAATAAAGACTCGGCAGAA  333

seq1  GCACAGGATAGGCCTGCAGTTCCAGGAGAAGTATATGTCCTTTCCACTTA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAGGATAGGCCTGCAGTTCCAGGAGAAGTATATGTCCTTTCCACTTA  383

seq1  ACTTCCCCAGAGTCAGTCACAAAGCCATCACAGCTTGTGGGAAAGGAGAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCCCCAGAGTCAGTCACAAAGCCATCACAGCTTGTGGGAAAGGAGAA  433

seq1  GCCGGCTGACACAGGACACATGGCCACTGGAATGACTCTTTCTTATATAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGGCTGACACAGGACACATGGCCACTGGAATGACTCTTTCTTATATAA  483

seq1  CACATAGTCACAACTTAGGAAATGTACACAATTTAAAAACATGTAAGACA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATAGTCACAACTTAGGAAATGTACACAATTTAAAAACATGTAAGACA  533

seq1  TGTTTAAAAACATCCTAGTATTCTAGAATGGACACGGTAGATTTTGGACT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTAAAAACATCCTAGTATTCTAGAATGGACACGGTAGATTTTGGACT  583

seq1  CAAAAGCATCATGTAAGATAAAATAAGCTCATTCTATAATACTAAAGATA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGCATCATGTAAGATAAAATAAGCTCATTCTATAATACTAAAGATA  633

seq1  AAGATCATAATGGAATTGTATTAACTGAATAAAGCAATAGTCACTTTCTT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATCATAATGGAATTGTATTAACTGAATAAAGCAATAGTCACTTTCTT  683

seq1  AAAGCAGAAACTATAGGAGATCCACAGAAACACAAAAAGACAAGACATTA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCAGAAACTATAGGAGATCCACAGAAACACAAAAAGACAAGACATTA  733

seq1  ACACGCTTCTCTCAGTCCAAAGCATATCAAATAAATAAAGACACAAATGG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACGCTTCTCTCAGTCCAAAGCATATCAAATAAATAAAGACACAAATGG  783

seq1  CCTAGTCCTAATTATATAATCAGTAGTTAGATATTATATATCTGTATCAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGTCCTAATTATATAATCAGTAGTTAGATATTATATATCTGTATCAA  833

seq1  ACTGAGAAGCAAACATCCACCTTCATATGACCATTCATGAGCACTGATAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGAAGCAAACATCCACCTTCATATGACCATTCATGAGCACTGATAA  883

seq1  CATATTAGGCAGCAAAGAAAGAAGAAAGATCATTGTTGGTTTTCTAATTA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTAGGCAGCAAAGAAAGAAGAAAGATCATTGTTGGTTTTCTAATTA  933

seq1  CAAGGAAATAAAACAGAAATTTAACAACAACAAAAAAAATTTTAAGTCTC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGAAATAAAACAGAAATTTAACAACAACAAAAAAAATTTTAAGTCTC  983

seq1  TTCTGTCTAGAAGGATGCCCCCAGCAACTCCTAGATCAAAGAGCAAACAG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTCTAGAAGGATGCCCCCAGCAACTCCTAGATCAAAGAGCAAACAG  1033

seq1  ACTTAAGATCAAAGCACTATGTATCAGGTCCTACAGTATACAGTCAAAGC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAAGATCAAAGCACTATGTATCAGGTCCTACAGTATACAGTCAAAGC  1083

seq1  AGTTTAAGAATTC  1112
      |||||||||||||
seq2  AGTTTAAGAATTC  1096