BAC Information

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BAC

Clone NameB6Ng01-062H20
Chromosome2 (Build37)6 (Build37)
Map Location 142,776,676 - 142,777,69846,674,478 - 46,675,653
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC668913, LOC668914, Kif16b
Downstream geneSnrpb2, Otor, LOC668915, LOC668916, Pcsk2, Bfsp1, LOC100043799, LOC100043534, Dstn, Rrbp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-062H20.bB6Ng01-062H20.g
ACCDH882868DH882869
length9221,151
definitionDH882868|Mus musculus domesticus DNA, BAC clone: B6Ng01-062H20, 5' end.DH882869|Mus musculus domesticus DNA, BAC clone: B6Ng01-062H20, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(142,776,676 - 142,777,698)(46,674,478 - 46,675,653)
sequence
gaattgtttgttcagttctgagccccattttttaatggggttatttgatt
ttctgaagtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggtct
ttttgtcttattgacagtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcaattctcgatcttacagcacaagccattgctgtt
ctgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccac
tttctcctctataagtttcagtgtctctggttttatgtgaagttccttga
tccacttagatttgaccttagtacaaggagataagtatggatcgattcgc
attcttctacacgataacaaccagttgtgccagcaccaattgttgaaaat
gctgtctttcttccactggatggttttagctcccttgtcgaagatcaagt
aaccataggtgtgtgggttcatttctgggtcttcaattctattccattgg
tctacttgtctgtctctataccagtaccatgcagtttttatcacaattgc
tctgtagtaaagctttaggtctggcatggtgatcacgccagaagttcttt
tatccttgagaagactttttgctatcctaggttttttgttattccagaca
aatttgcaaattgctccttccaattcgttgaagaattgagttggaatttt
gatggggattgcattgaatctgtagattgcttttggcaagatagccattt
ttacaatgttgatcctgccaatccatgagcatgggagatctttccatctt
ctgagatcttccttaatttctttcttcagagatttgaagttttttttttt
tttttattaggtatttactcat
gaattcaatatatattttgtgaggagggtggaagttacaattcaacacac
acacttgggaactttaaaaaaaaatcagtatcatttagttttcttcttag
tggagctgttccacttgaaaacaaaacaaaacaaaacacccccccaaaaa
caaaaactaaaactaaacacccaaaaagcaagcaaacaaaaaaacactgg
gaccctctgtgtccacgttgaaaatatttttactttagttaatctctact
ctgtgtccttgaacataacacctaacacacttggttccaatataagtgtg
cagttgacttttaaaaacaatacattgtgtagctagtactagaaagtctt
agtatagggtctgtgaagaaaattgatatgccgtgcccttgccatgattt
attcttcttaaatatgagtggtatgcattataagtggattcaaattgtgg
gaaaactctgctaattaaggtcaaagtccaccatgactggatagcctctg
ggttcagagcctatgggagactcccttcattagtggggtttctccttctt
tgaccttgtctgggagcccacacatatgtctcaacatgaggaatgtcaca
tagcctcaattatattacaggacaaatttcctttctcctgatagaaatct
gttcagccatcacctgaaattcctccccatgctaatgagacatttcagat
accccaaacccccaagtaatgaatgaccttggcctatcctggatattctt
accctcagtccccccaaactttataagctttgaatcaccccaagtaaagt
tgatatgccccatgatagctggtctcagtatggtcattcaccctacatac
tcacagggcttcagaaggccctgttcatcgtccctgctcccactgccttt
gtggtctttactggccatgatccaaaaggtgggaaggcccacagcagaca
ctgttgctggagtgtatttgcattaggatgcagcacatatcaaagatgtg
ctgatttctgttcgtgctctgttaggttactctatagcatttattgtttt
ggttgagagcctttttttgactttggctccaatgcaatggctttgcttct
agagacaagcactctgtgctttagactggcctagcaacagcatacgctga
a
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_142776676_142777698
seq2: B6Ng01-062H20.b_42_604 (reverse)

seq1  ACAGACAAGTAGACCAATGGAATAGAATTGAAGACCCAGAAATGAACCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACAAGTAGACCAATGGAATAGAATTGAAGACCCAGAAATGAACCCA  50

seq1  CACACCTATGGTCACTTGATCTTCGACAAGGGAGCTAAAACCATCCAGAG  100
      |||||||||||| ||||||||||||||||||||||||||||||||||| |
seq2  CACACCTATGGTTACTTGATCTTCGACAAGGGAGCTAAAACCATCCAGTG  100

seq1  GAAGAAAGACAGCATTTTCAACAATTGGTGCTGGCACAACTGGTTGTTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAAGACAGCATTTTCAACAATTGGTGCTGGCACAACTGGTTGTTAT  150

seq1  CATGTAGAAGAATGGGAATCGATCCATACTTATCTCCTTGTACTAAGGTC  200
      | |||||||||||| |||||||||||||||||||||||||||||||||||
seq2  CGTGTAGAAGAATGCGAATCGATCCATACTTATCTCCTTGTACTAAGGTC  200

seq1  AAATCTAAGTGGATCAAGGAACTTCACATAAAACCAGAGACACTGAAACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTAAGTGGATCAAGGAACTTCACATAAAACCAGAGACACTGAAACT  250

seq1  TATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATATGGGCACAGGGGACA  300
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATATGGGCACAGGGGAAA  300

seq1  AATTCCTGAACAGAACAGCAATGGCTTGTGCTGTAAGATCGAGAATTGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCCTGAACAGAACAGCAATGGCTTGTGCTGTAAGATCGAGAATTGAC  350

seq1  AAATGGGACCTAATGAAACTCCAAAGTTTCTGCAAGGCAAAAGACACCGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  AAATGGGACCTAATGAAACTCCAAAGTTTCTGCAAGGCAAAAGACACTGT  400

seq1  CAATAAGACAAAAAGACCACCAACAGATTGGGAAAGGATCTTTACCTATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAAGACAAAAAGACCACCAACAGATTGGGAAAGGATCTTTACCTATC  450

seq1  CTAAATCAGATAGGGGACTAATATCCAACATATATAAAGAACTCAAGAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAATCAGATAGGGGACTAATATCCAACATATATAAAGAACTCAAGAAG  500

seq1  GTGGACTTCAGAAAATCAAATAACCCCATTAAAAAATGGGGCTCACA---  547
      ||||||||||||||||||||||||||||||||||||||||||||| |   
seq2  GTGGACTTCAGAAAATCAAATAACCCCATTAAAAAATGGGGCTCAGAACT  550

seq1  ----AAACCATCCAGTGGAAGAAAGACAGCATTTTCAACAATTGGTGCTG  593
          |||| || |                                     
seq2  GAACAAACAATTC-------------------------------------  563

seq1  GCACAACTGGTTGTTATCATGTAGAAGAATGCGAATCGATCCATACTTAT  643
                                                        
seq2  --------------------------------------------------  563

seq1  CTCCTTGTACTAAGGTCAAATCTAAGTGGATCAAGGAACTTCACATAAAA  693
                                                        
seq2  --------------------------------------------------  563

seq1  CCAGAGACACTGAAACTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGA  743
                                                        
seq2  --------------------------------------------------  563

seq1  TATGGGCACAGGGGAAAAATTCCTGAACAGAAGAGCAATGGCTTGTGCTG  793
                                                        
seq2  --------------------------------------------------  563

seq1  TAAGATCGAGAATTGACAAATGGGACCTAATGAAACTCCAAAGTTTCTGC  843
                                                        
seq2  --------------------------------------------------  563

seq1  AAGGCAAAAGACACTGTCTATAAGACAAAAAGACCACCAACAGACTGGGA  893
                                                        
seq2  --------------------------------------------------  563

seq1  AAGGATCTTTACCTATCCTAAATCAGATAGGGGACTAATATCCAACATAT  943
                                                        
seq2  --------------------------------------------------  563

seq1  ATAAAGAACTCAAGAAGGTGGACCTCAGAAAATCAAATAACCCCATTAAA  993
                                                        
seq2  --------------------------------------------------  563

seq1  AAATGGGGCTCAGAACTGAACAAAGAATTC  1023
                                    
seq2  ------------------------------  563

seq1: chr6_46674478_46675653
seq2: B6Ng01-062H20.g_66_1216 (reverse)

seq1  TTCAGCTGATGCTTGTTGCTAAGAGCCAGTTCCTAAAAGCACAGGAGTGC  50
      ||||||  |||| ||||||||   ||||||  || |||||||| ||||||
seq2  TTCAGCGTATGC-TGTTGCTA--GGCCAGT--CT-AAAGCACA-GAGTGC  43

seq1  TTGTCTCTAGGAAGCAAAGCCATTTGCCATTTAGAAGCCAAAGTTCAGAA  100
      ||||||||| ||||||||||||||   ||||  | |||||||| ||| ||
seq2  TTGTCTCTA-GAAGCAAAGCCATT--GCATT--GGAGCCAAAG-TCAAAA  87

seq1  AAAGAGCTCTCACACAAAACAATAAAATTGCTATAGAGTAAACCTAGACA  150
      |||| |||||||  ||||||||||||  ||||||||||| |||||| |||
seq2  AAAG-GCTCTCAACCAAAACAATAAA--TGCTATAGAGT-AACCTA-ACA  132

seq1  GAGCACGAAACAGAAATCAGCACATCTTTGATATGGTGCTGCATCCCTAA  200
      ||||||| |||||||||||||||||||||||||| ||||||||| |||||
seq2  GAGCACG-AACAGAAATCAGCACATCTTTGATAT-GTGCTGCAT-CCTAA  179

seq1  TGCAAATTACACTCCAGCAACAGTGTCTTGCTGTGGGCCTTCCCACCCTT  250
      |||||| |||||||||||||||||||| ||||||||||||||||| ||||
seq2  TGCAAA-TACACTCCAGCAACAGTGTC-TGCTGTGGGCCTTCCCA-CCTT  226

seq1  TTGGATCATTGGCCAGTAAAGACCACAAAGGCAGTGGGAGCAGGGACGAT  300
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TTGGATCA-TGGCCAGTAAAGACCACAAAGGCAGTGGGAGCAGGGACGAT  275

seq1  GAACAGGGCCTTCTGAAGCCCTGTGAGTATGTAGGGTGAATGACCATACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAGGGCCTTCTGAAGCCCTGTGAGTATGTAGGGTGAATGACCATACT  325

seq1  GAGACCAGCTATCATGGGGCATATCAACTTTACTTGGGGTGATTCAAAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACCAGCTATCATGGGGCATATCAACTTTACTTGGGGTGATTCAAAGC  375

seq1  TTATAAAGTTTGGGGGGACTGAGGGTAAGAATATCCAGGATAGGCCAAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAAAGTTTGGGGGGACTGAGGGTAAGAATATCCAGGATAGGCCAAGG  425

seq1  TCATTCATTACTTGGGGGTTTGGGGTATCTGAAATGTCTCATTAGCATGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTCATTACTTGGGGGTTTGGGGTATCTGAAATGTCTCATTAGCATGG  475

seq1  GGAGGAATTTCAGGTGATGGCTGAACAGATTTCTATCAGGAGAAAGGAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGAATTTCAGGTGATGGCTGAACAGATTTCTATCAGGAGAAAGGAAA  525

seq1  TTTGTCCTGTAATATAATTGAGGCTATGTGACATTCCTCATGTTGAGACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCCTGTAATATAATTGAGGCTATGTGACATTCCTCATGTTGAGACA  575

seq1  TATGTGTGGGCTCCCAGACAAGGTCAAAGAAGGAGAAACCCCACTAATGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGTGGGCTCCCAGACAAGGTCAAAGAAGGAGAAACCCCACTAATGA  625

seq1  AGGGAGTCTCCCATAGGCTCTGAACCCAGAGGCTATCCAGTCATGGTGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGTCTCCCATAGGCTCTGAACCCAGAGGCTATCCAGTCATGGTGGA  675

seq1  CTTTGACCTTAATTAGCAGAGTTTTCCCACAATTTGAATCCACTTATAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGACCTTAATTAGCAGAGTTTTCCCACAATTTGAATCCACTTATAAT  725

seq1  GCATACCACTCATATTTAAGAAGAATAAATCATGGCAAGGGCACGGCATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATACCACTCATATTTAAGAAGAATAAATCATGGCAAGGGCACGGCATA  775

seq1  TCAATTTTCTTCACAGACCCTATACTAAGACTTTCTAGTACTAGCTACAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATTTTCTTCACAGACCCTATACTAAGACTTTCTAGTACTAGCTACAC  825

seq1  AATGTATTGTTTTTAAAAGTCAACTGCACACTTATATTGGAACCAAGTGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTATTGTTTTTAAAAGTCAACTGCACACTTATATTGGAACCAAGTGT  875

seq1  GTTAGGTGTTATGTTCAAGGACACAGAGTAGAGATTAACTAAAGTAAAAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGGTGTTATGTTCAAGGACACAGAGTAGAGATTAACTAAAGTAAAAA  925

seq1  TATTTTCAACGTGGACACAGAGGGTCCCAGTGTTTTTTTGTTTGCTTGCT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTCAACGTGGACACAGAGGGTCCCAGTGTTTTTTTGTTTGCTTGCT  975

seq1  TTTTGGGTGTTTAGTTTTAGTTTTTGTTTTTGGGGGGGTGTTTTGTTTTG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGGTGTTTAGTTTTAGTTTTTGTTTTTGGGGGGGTGTTTTGTTTTG  1025

seq1  TTTTGTTTTCAAGTGGAACAGCTCCACTAAGAAGAAAACTAAATGATACT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTTTCAAGTGGAACAGCTCCACTAAGAAGAAAACTAAATGATACT  1075

seq1  GATTTTTTTTTAAAGTTCCCAAGTGTGTGTGTTGAATTGTAACTTCCACC  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTTTTTTAAAGTTCCCAAGTGTGTGTGTTGAATTGTAACTTCCACC  1125

seq1  CTCCTCACAAAATATATATTGAATTC  1176
      ||||||||||||||||||||||||||
seq2  CTCCTCACAAAATATATATTGAATTC  1151